Wall clock time and date at job start Tue Mar 31 2020 23:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46990 * 2 1 4 4 S 1.81397 * 109.47235 * 179.97438 * 3 2 1 5 5 O 1.42105 * 110.54275 * 68.37271 * 4 3 2 6 6 O 1.42101 * 110.54298 * 291.62373 * 4 3 2 7 7 C 1.76193 * 104.44909 * 179.97438 * 4 3 2 8 8 C 1.37984 * 120.07458 * 115.00357 * 7 4 3 9 9 C 1.38335 * 120.14206 * 180.02562 * 8 7 4 10 10 C 1.38376 * 120.29907 * 359.97438 * 9 8 7 11 11 C 1.37933 * 120.14233 * 0.02562 * 10 9 8 12 12 C 1.39557 * 120.07567 * 294.72689 * 7 4 3 13 13 C 1.47850 * 120.14291 * 359.97438 * 12 7 4 14 14 O 1.21548 * 119.99627 * 0.02562 * 13 12 7 15 15 N 1.34777 * 119.99970 * 180.02562 * 13 12 7 16 16 C 1.46502 * 119.99804 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47009 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47099 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47120 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99762 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00246 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99685 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47321 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47129 * 119.99949 * 23 21 19 26 26 H 1.48502 * 109.46555 * 240.00108 * 23 21 19 27 27 H 1.09005 * 109.46880 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47375 * 300.00190 * 1 2 3 29 29 H 1.09000 * 109.47020 * 60.00531 * 1 2 3 30 30 H 1.08995 * 109.47375 * 239.99810 * 2 1 3 31 31 H 1.09000 * 109.47020 * 119.99468 * 2 1 3 32 32 H 1.09004 * 109.47149 * 59.99749 * 3 2 1 33 33 H 1.09000 * 109.46805 * 299.99601 * 3 2 1 34 34 H 1.08002 * 119.92458 * 0.02562 * 8 7 4 35 35 H 1.08013 * 119.84875 * 179.97438 * 9 8 7 36 36 H 1.08003 * 119.93261 * 180.02562 * 10 9 8 37 37 H 1.08003 * 120.07671 * 179.97438 * 11 10 9 38 38 H 0.96996 * 119.99752 * 0.02562 * 15 13 12 39 39 H 1.09001 * 109.47129 * 299.99914 * 16 15 13 40 40 H 1.08995 * 109.47225 * 59.99949 * 16 15 13 41 41 H 1.09001 * 109.47109 * 299.99932 * 17 16 15 42 42 H 1.09004 * 109.47223 * 59.99665 * 17 16 15 43 43 H 1.09001 * 109.47269 * 300.00060 * 18 17 16 44 44 H 1.09004 * 109.47172 * 59.99860 * 18 17 16 45 45 H 0.97004 * 120.00014 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4427 0.0008 5 8 4.3531 0.9521 -1.2360 6 8 4.3521 0.9525 1.2380 7 6 4.2935 3.1489 -0.0001 8 6 4.9543 3.6932 1.0821 9 6 5.2996 5.0328 1.0831 10 6 4.9859 5.8355 0.0005 11 6 4.3255 5.3039 -1.0876 12 6 3.9792 3.9515 -1.0976 13 6 3.2772 3.3735 -2.2634 14 8 2.9721 2.1969 -2.2670 15 7 2.9756 4.1511 -3.3220 16 6 2.2795 3.5785 -4.4769 17 6 2.0596 4.6659 -5.5305 18 6 1.3332 4.0677 -6.7368 19 6 1.1160 5.1389 -7.7743 20 1 1.4619 6.1455 -7.5917 21 6 0.4757 4.8337 -8.9567 22 7 0.0540 3.6080 -9.1789 23 14 0.2071 6.1614 -10.2431 24 1 0.7699 7.4456 -9.7540 25 1 0.8853 5.7720 -11.5054 26 1 -1.2481 6.3221 -10.4920 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9565 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 5.2024 3.0721 1.9300 35 1 5.8164 5.4541 1.9329 36 1 5.2587 6.8804 0.0074 37 1 4.0808 5.9314 -1.9318 38 1 3.2194 5.0900 -3.3192 39 1 2.8817 2.7759 -4.9028 40 1 1.3158 3.1804 -4.1595 41 1 1.4572 5.4681 -5.1044 42 1 3.0232 5.0644 -5.8480 43 1 1.9359 3.2656 -7.1629 44 1 0.3696 3.6688 -6.4197 45 1 -0.3968 3.3934 -10.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171501943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:34 Heat of formation + Delta-G solvation = -110.495057 kcal Electronic energy + Delta-G solvation = -27307.662420 eV Core-core repulsion = 23416.421329 eV Total energy + Delta-G solvation = -3891.241091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.54090 -39.54192 -38.01953 -37.06162 -36.83742 -35.76418 -35.28135 -33.44859 -32.44377 -32.05005 -28.74518 -28.51146 -25.78850 -24.40597 -24.18574 -22.77013 -22.33574 -21.62922 -20.03245 -19.34748 -18.51019 -18.03288 -17.29320 -17.21932 -17.19136 -16.82959 -16.48618 -16.06210 -15.97071 -15.76079 -15.60490 -15.39870 -14.64687 -14.41553 -14.22481 -14.00037 -13.76386 -13.64288 -13.56922 -13.41153 -13.20242 -13.01018 -12.88398 -12.73908 -12.66283 -12.52913 -12.35364 -12.33188 -11.94313 -11.81787 -11.64719 -11.57283 -11.33524 -11.21610 -10.95873 -10.55799 -10.46528 -10.28353 -10.03291 -8.19278 -6.30534 -0.86729 -0.55530 -0.01588 1.41914 1.42362 1.55126 1.63815 1.91644 1.99870 2.42339 2.49071 2.87874 3.14909 3.27619 3.49393 3.63248 3.66589 3.86458 3.99639 4.14083 4.19298 4.21839 4.24737 4.25338 4.44846 4.48865 4.54838 4.69147 4.71564 4.73020 4.88496 4.94029 4.95969 5.06301 5.08987 5.10963 5.17163 5.24107 5.28916 5.36097 5.52546 5.69911 5.71281 5.84880 6.21994 6.35558 6.87468 7.00618 7.39211 8.92963 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.002676 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.821947 B =10459.031353 C =11935.879533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C -0.585 4.585 4 S 2.501 3.499 5 O -0.959 6.959 6 O -0.979 6.979 7 C -0.627 4.627 8 C -0.044 4.044 9 C -0.107 4.107 10 C -0.065 4.065 11 C -0.103 4.103 12 C -0.065 4.065 13 C 0.521 3.479 14 O -0.541 6.541 15 N -0.698 5.698 16 C 0.127 3.873 17 C -0.103 4.103 18 C 0.023 3.977 19 C -0.539 4.539 20 H 0.068 0.932 21 C -0.004 4.004 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.257 1.257 25 H -0.282 1.282 26 H -0.280 1.280 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.416 0.584 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.067 0.933 43 H -0.010 1.010 44 H -0.005 1.005 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.481 5.564 26.490 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C -0.717 4.717 4 S 2.686 3.314 5 O -0.956 6.956 6 O -0.977 6.977 7 C -0.715 4.715 8 C -0.063 4.063 9 C -0.126 4.126 10 C -0.083 4.083 11 C -0.123 4.123 12 C -0.069 4.069 13 C 0.308 3.692 14 O -0.422 6.422 15 N -0.350 5.350 16 C 0.004 3.996 17 C -0.141 4.141 18 C -0.015 4.015 19 C -0.577 4.577 20 H 0.086 0.914 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.791 3.209 24 H -0.181 1.181 25 H -0.208 1.208 26 H -0.206 1.206 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.192 0.808 36 H 0.196 0.804 37 H 0.179 0.821 38 H 0.254 0.746 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.009 0.991 44 H 0.013 0.987 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.788 3.969 26.326 27.739 hybrid contribution -0.561 1.091 -1.314 1.798 sum 7.227 5.059 25.012 26.522 Atomic orbital electron populations 1.21718 0.92602 1.03097 1.02726 1.21367 0.99733 0.91773 1.03380 1.30326 1.21102 1.07067 1.13239 1.04975 0.79200 0.74331 0.72911 1.93579 1.78741 1.78623 1.44706 1.93474 1.79409 1.78889 1.45886 1.30581 1.14151 1.25002 1.01721 1.21323 0.92226 0.97159 0.95612 1.22013 0.97911 0.92549 1.00090 1.21951 0.92775 1.02276 0.91297 1.21856 0.97163 0.92585 1.00653 1.19539 0.99399 0.95795 0.92145 1.18922 0.80010 0.86264 0.83967 1.90847 1.54065 1.15993 1.81287 1.45750 1.58439 1.14027 1.16754 1.21370 0.96278 0.96808 0.85178 1.21615 1.01031 0.97077 0.94348 1.18945 0.94351 0.95448 0.92738 1.21711 1.37103 0.96817 1.02054 0.91428 1.26020 0.95422 0.97740 1.00969 1.70119 1.40451 1.20795 1.26185 0.85381 0.77798 0.79365 0.78379 1.18066 1.20795 1.20610 0.90903 0.90763 0.93023 0.91645 0.89401 0.82833 0.83791 0.82534 0.80757 0.80358 0.82119 0.74552 0.93061 0.91944 0.90828 0.91433 0.99148 0.98701 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.91 71.98 0.71 -1.84 16 2 C -0.12 -2.66 5.94 30.60 0.18 -2.48 16 3 C -0.59 -12.86 5.33 71.99 0.38 -12.48 16 4 S 2.50 69.06 4.50 -56.49 -0.25 68.80 16 5 O -0.96 -36.00 14.81 -118.12 -1.75 -37.74 16 6 O -0.98 -28.53 16.74 -127.65 -2.14 -30.67 16 7 C -0.63 -14.44 5.61 22.53 0.13 -14.31 16 8 C -0.04 -0.76 9.49 22.23 0.21 -0.54 16 9 C -0.11 -1.08 10.04 22.33 0.22 -0.86 16 10 C -0.07 -0.59 10.03 22.23 0.22 -0.37 16 11 C -0.10 -1.46 9.54 22.53 0.21 -1.25 16 12 C -0.06 -1.46 5.86 -20.09 -0.12 -1.58 16 13 C 0.52 14.94 7.36 86.79 0.64 15.58 16 14 O -0.54 -18.98 9.08 20.18 0.18 -18.80 16 15 N -0.70 -18.20 5.51 -465.97 -2.57 -20.76 16 16 C 0.13 4.28 5.67 86.38 0.49 4.77 16 17 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 18 C 0.02 1.16 4.97 29.85 0.15 1.31 16 19 C -0.54 -29.44 9.11 25.60 0.23 -29.20 16 20 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 21 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 22 N -0.94 -56.65 13.29 21.45 0.28 -56.36 16 23 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 27 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.14 3.57 5.45 -2.39 -0.01 3.56 16 34 H 0.16 2.37 7.21 -2.91 -0.02 2.35 16 35 H 0.18 0.46 8.06 -2.90 -0.02 0.44 16 36 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 37 H 0.16 1.40 6.41 -2.91 -0.02 1.38 16 38 H 0.42 7.68 6.51 -92.71 -0.60 7.08 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 43 H -0.01 -0.56 8.14 -2.39 -0.02 -0.57 16 44 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 45 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -81.73 379.83 0.47 -81.26 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.39 Total: 15.69 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 4.29 Total: -46.62 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -2.28 Total: -77.13 kcal Atomic # 8 Polarization: -83.51 SS G_CDS: -3.70 Total: -87.21 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 69.06 SS G_CDS: -0.25 Total: 68.80 kcal Total: -81.73 0.47 -81.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171501943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.239 kcal (2) G-P(sol) polarization free energy of solvation -81.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds