Wall clock time and date at job start Tue Mar 31 2020 23:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46892 * 2 1 4 4 S 1.81399 * 109.47022 * 119.99501 * 2 1 3 5 5 O 1.42095 * 110.54646 * 286.53448 * 4 2 1 6 6 O 1.42107 * 110.54111 * 63.28984 * 4 2 1 7 7 C 1.76206 * 104.44738 * 174.91113 * 4 2 1 8 8 C 1.37973 * 120.07119 * 113.72946 * 7 4 2 9 9 C 1.38339 * 120.14452 * 179.97438 * 8 7 4 10 10 C 1.38380 * 120.29483 * 0.02562 * 9 8 7 11 11 C 1.37942 * 120.14057 * 0.02562 * 10 9 8 12 12 C 1.39557 * 120.07215 * 293.45491 * 7 4 2 13 13 C 1.47841 * 120.14681 * 0.02562 * 12 7 4 14 14 O 1.21551 * 119.99924 * 5.61527 * 13 12 7 15 15 N 1.34777 * 120.00174 * 185.62005 * 13 12 7 16 16 C 1.46497 * 120.00252 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47046 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46859 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47053 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99952 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00080 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99862 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00110 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47120 * 89.99507 * 23 21 19 25 25 H 1.48490 * 109.47167 * 209.99853 * 23 21 19 26 26 H 1.48501 * 109.46690 * 329.99768 * 23 21 19 27 27 H 1.09002 * 109.46896 * 300.00227 * 1 2 3 28 28 H 1.09003 * 109.47195 * 60.00165 * 1 2 3 29 29 H 1.09004 * 109.47086 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46958 * 239.99918 * 2 1 3 31 31 H 1.08999 * 109.46905 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46708 * 299.99516 * 3 2 1 33 33 H 1.08993 * 109.47236 * 59.99646 * 3 2 1 34 34 H 1.08005 * 119.93274 * 0.02816 * 8 7 4 35 35 H 1.08000 * 119.85420 * 179.97438 * 9 8 7 36 36 H 1.07992 * 119.93051 * 179.97438 * 10 9 8 37 37 H 1.07995 * 120.07230 * 179.97438 * 11 10 9 38 38 H 0.97007 * 119.99270 * 359.97438 * 15 13 12 39 39 H 1.08993 * 109.47027 * 299.99900 * 16 15 13 40 40 H 1.09000 * 109.46974 * 59.99855 * 16 15 13 41 41 H 1.09003 * 109.47318 * 299.99842 * 17 16 15 42 42 H 1.08993 * 109.47275 * 59.99889 * 17 16 15 43 43 H 1.08993 * 109.47411 * 299.99752 * 18 17 16 44 44 H 1.09000 * 109.47162 * 60.00200 * 18 17 16 45 45 H 0.97007 * 119.99846 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 2.1347 -0.8550 1.4812 5 8 1.9439 -0.0485 2.6354 6 8 1.7369 -2.2192 1.4667 7 6 3.8836 -0.9101 1.2739 8 6 4.7037 -0.2026 2.1286 9 6 6.0771 -0.2452 1.9675 10 6 6.6375 -0.9961 0.9492 11 6 5.8288 -1.7072 0.0872 12 6 4.4425 -1.6740 0.2483 13 6 3.5700 -2.4390 -0.6678 14 8 2.3622 -2.3239 -0.5943 15 7 4.1138 -3.2640 -1.5843 16 6 3.2492 -4.0224 -2.4917 17 6 4.1119 -4.8744 -3.4249 18 6 3.2089 -5.6660 -4.3730 19 6 4.0586 -6.5047 -5.2926 20 1 5.1351 -6.4763 -5.2088 21 6 3.4618 -7.3092 -6.2401 22 7 4.2034 -8.0415 -7.0422 23 14 1.6001 -7.3589 -6.3845 24 1 1.1501 -6.3188 -7.3441 25 1 1.1769 -8.6968 -6.8701 26 1 0.9935 -7.1005 -5.0539 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 4.2727 0.3851 2.9257 35 1 6.7146 0.3108 2.6389 36 1 7.7103 -1.0248 0.8286 37 1 6.2673 -2.2925 -0.7074 38 1 5.0778 -3.3555 -1.6431 39 1 2.5926 -4.6702 -1.9111 40 1 2.6481 -3.3316 -3.0830 41 1 4.7684 -4.2263 -4.0055 42 1 4.7133 -5.5651 -2.8340 43 1 2.5522 -6.3141 -3.7928 44 1 2.6079 -4.9749 -4.9639 45 1 3.7835 -8.6072 -7.7091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171502200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:41 Heat of formation + Delta-G solvation = -81.095357 kcal Electronic energy + Delta-G solvation = -27676.421756 eV Core-core repulsion = 23786.455531 eV Total energy + Delta-G solvation = -3889.966224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -40.64451 -38.75258 -37.00444 -35.91904 -35.75894 -35.01721 -33.55387 -32.14353 -31.77219 -31.06727 -27.60863 -27.37746 -24.56266 -23.67674 -22.71121 -22.50553 -20.96330 -20.28309 -19.02884 -18.45853 -17.25650 -16.86015 -16.55085 -16.30843 -15.87034 -15.76221 -15.41886 -15.04084 -14.81428 -14.68514 -14.18232 -14.09688 -13.59742 -13.48671 -13.36198 -13.09840 -12.77246 -12.75144 -12.56653 -12.20909 -12.15138 -12.00085 -11.96918 -11.74632 -11.65155 -11.39625 -11.15119 -11.03121 -10.91138 -10.31851 -10.29502 -10.06067 -9.86089 -9.79536 -9.71456 -9.52915 -9.27652 -9.00158 -8.59183 -6.10002 -4.09125 -0.02968 0.25815 0.62574 2.47446 2.81520 2.96959 3.24997 3.28648 3.36839 3.40932 3.77995 4.07477 4.28049 4.29143 4.41120 4.41277 4.44208 4.65255 4.80315 4.92519 5.03250 5.09523 5.22226 5.24115 5.28654 5.30507 5.41613 5.45326 5.55331 5.56739 5.64024 5.67223 5.79618 5.82109 5.84919 5.92362 6.19335 6.26057 6.36113 6.55305 6.70246 7.16753 7.30610 7.31709 7.71657 7.95863 8.45782 8.93326 9.52109 11.03160 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.002832 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.587829 B = 9883.753250 C =11107.995491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.561 4.561 3 C -0.144 4.144 4 S 2.508 3.492 5 O -0.957 6.957 6 O -0.909 6.909 7 C -0.611 4.611 8 C -0.032 4.032 9 C -0.118 4.118 10 C -0.075 4.075 11 C -0.105 4.105 12 C -0.042 4.042 13 C 0.532 3.468 14 O -0.516 6.516 15 N -0.707 5.707 16 C 0.111 3.889 17 C -0.115 4.115 18 C -0.011 4.011 19 C -0.523 4.523 20 H 0.072 0.928 21 C 0.067 3.933 22 N -0.903 5.903 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.264 1.264 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.151 0.849 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.401 0.599 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.020 0.980 44 H 0.015 0.985 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 21.625 17.995 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.672 4.672 3 C -0.202 4.202 4 S 2.686 3.314 5 O -0.954 6.954 6 O -0.906 6.906 7 C -0.696 4.696 8 C -0.050 4.050 9 C -0.137 4.137 10 C -0.093 4.093 11 C -0.125 4.125 12 C -0.045 4.045 13 C 0.318 3.682 14 O -0.395 6.395 15 N -0.357 5.357 16 C -0.011 4.011 17 C -0.153 4.153 18 C -0.049 4.049 19 C -0.561 4.561 20 H 0.090 0.910 21 C -0.134 4.134 22 N -0.541 5.541 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.188 1.188 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.176 0.824 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.169 0.831 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.237 0.763 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.038 0.962 44 H 0.033 0.967 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.881 21.195 18.557 28.185 hybrid contribution 0.404 -0.049 -0.959 1.041 sum 1.285 21.146 17.598 27.541 Atomic orbital electron populations 1.21576 0.90031 1.04143 1.03875 1.30181 1.06701 1.08301 1.22026 1.21702 1.01295 0.92792 1.04411 1.05433 0.73951 0.75865 0.76160 1.93500 1.84659 1.71830 1.45404 1.93623 1.79938 1.30885 1.86203 1.30916 1.27399 1.07347 1.03950 1.21053 0.93622 0.94241 0.96113 1.21531 0.95092 0.98906 0.98168 1.21446 1.00581 0.93913 0.93318 1.21498 0.92239 0.99055 0.99693 1.19680 0.94480 0.95934 0.94450 1.18372 0.87943 0.80783 0.81086 1.90786 1.13952 1.65057 1.69747 1.45988 1.11096 1.43790 1.34808 1.21819 0.93550 0.94556 0.91204 1.21731 0.98754 0.97862 0.96915 1.19500 0.95657 0.95220 0.94500 1.21079 0.94824 1.24247 1.15979 0.91024 1.25027 0.98221 0.94943 0.95254 1.69911 1.35539 1.27799 1.20887 0.86777 0.86150 0.77413 0.78991 1.20250 1.21335 1.18817 0.91691 0.90043 0.90373 0.82420 0.91748 0.90419 0.90788 0.83141 0.84469 0.84389 0.84388 0.76349 0.90854 0.91171 0.92054 0.91947 0.96157 0.96691 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.20 37.16 0.34 -1.01 16 2 C -0.56 -6.01 2.69 -26.73 -0.07 -6.08 16 3 C -0.14 -1.17 8.99 37.16 0.33 -0.83 16 4 S 2.51 33.16 4.00 -107.50 -0.43 32.73 16 5 O -0.96 -13.35 16.45 -57.54 -0.95 -14.30 16 6 O -0.91 -15.73 14.88 -67.45 -1.00 -16.73 16 7 C -0.61 -7.07 5.08 -39.19 -0.20 -7.27 16 8 C -0.03 -0.29 9.49 -39.64 -0.38 -0.67 16 9 C -0.12 -0.81 10.04 -39.49 -0.40 -1.21 16 10 C -0.07 -0.50 10.03 -39.64 -0.40 -0.90 16 11 C -0.11 -0.89 9.53 -39.18 -0.37 -1.26 16 12 C -0.04 -0.48 5.86 -104.97 -0.62 -1.09 16 13 C 0.53 7.33 7.38 -12.33 -0.09 7.24 16 14 O -0.52 -8.25 9.08 -19.67 -0.18 -8.43 16 15 N -0.71 -9.06 5.51 -61.26 -0.34 -9.40 16 16 C 0.11 1.71 5.67 -4.05 -0.02 1.69 16 17 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 18 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 19 C -0.52 -14.44 9.66 -34.44 -0.33 -14.77 16 20 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 22 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 23 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.26 -6.19 6.54 56.52 0.37 -5.83 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.16 1.81 5.51 -51.93 -0.29 1.52 16 31 H 0.06 0.46 7.71 -51.93 -0.40 0.06 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.55 8.01 -51.93 -0.42 0.13 16 34 H 0.15 1.20 7.21 -52.48 -0.38 0.82 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.14 0.84 6.45 -52.49 -0.34 0.51 16 38 H 0.40 3.97 6.54 -40.82 -0.27 3.71 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 44 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -36.02 374.26 -10.37 -46.40 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.67 Total: 0.83 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -2.55 Total: -26.87 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.44 Total: -36.04 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -2.13 Total: -39.46 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 33.16 SS G_CDS: -0.43 Total: 32.73 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.02 -10.37 -46.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171502200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.700 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds