Wall clock time and date at job start Tue Mar 31 2020 23:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46892 * 2 1 4 4 S 1.81399 * 109.47022 * 119.99501 * 2 1 3 5 5 O 1.42095 * 110.54646 * 286.53448 * 4 2 1 6 6 O 1.42107 * 110.54111 * 63.28984 * 4 2 1 7 7 C 1.76206 * 104.44738 * 174.91113 * 4 2 1 8 8 C 1.37973 * 120.07119 * 113.72946 * 7 4 2 9 9 C 1.38339 * 120.14452 * 179.97438 * 8 7 4 10 10 C 1.38380 * 120.29483 * 0.02562 * 9 8 7 11 11 C 1.37942 * 120.14057 * 0.02562 * 10 9 8 12 12 C 1.39557 * 120.07215 * 293.45491 * 7 4 2 13 13 C 1.47841 * 120.14681 * 0.02562 * 12 7 4 14 14 O 1.21551 * 119.99924 * 5.61527 * 13 12 7 15 15 N 1.34777 * 120.00174 * 185.62005 * 13 12 7 16 16 C 1.46497 * 120.00252 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47046 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46859 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47053 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99952 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00080 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99862 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00110 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47120 * 89.99507 * 23 21 19 25 25 H 1.48490 * 109.47167 * 209.99853 * 23 21 19 26 26 H 1.48501 * 109.46690 * 329.99768 * 23 21 19 27 27 H 1.09002 * 109.46896 * 300.00227 * 1 2 3 28 28 H 1.09003 * 109.47195 * 60.00165 * 1 2 3 29 29 H 1.09004 * 109.47086 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46958 * 239.99918 * 2 1 3 31 31 H 1.08999 * 109.46905 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46708 * 299.99516 * 3 2 1 33 33 H 1.08993 * 109.47236 * 59.99646 * 3 2 1 34 34 H 1.08005 * 119.93274 * 0.02816 * 8 7 4 35 35 H 1.08000 * 119.85420 * 179.97438 * 9 8 7 36 36 H 1.07992 * 119.93051 * 179.97438 * 10 9 8 37 37 H 1.07995 * 120.07230 * 179.97438 * 11 10 9 38 38 H 0.97007 * 119.99270 * 359.97438 * 15 13 12 39 39 H 1.08993 * 109.47027 * 299.99900 * 16 15 13 40 40 H 1.09000 * 109.46974 * 59.99855 * 16 15 13 41 41 H 1.09003 * 109.47318 * 299.99842 * 17 16 15 42 42 H 1.08993 * 109.47275 * 59.99889 * 17 16 15 43 43 H 1.08993 * 109.47411 * 299.99752 * 18 17 16 44 44 H 1.09000 * 109.47162 * 60.00200 * 18 17 16 45 45 H 0.97007 * 119.99846 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 2.1347 -0.8550 1.4812 5 8 1.9439 -0.0485 2.6354 6 8 1.7369 -2.2192 1.4667 7 6 3.8836 -0.9101 1.2739 8 6 4.7037 -0.2026 2.1286 9 6 6.0771 -0.2452 1.9675 10 6 6.6375 -0.9961 0.9492 11 6 5.8288 -1.7072 0.0872 12 6 4.4425 -1.6740 0.2483 13 6 3.5700 -2.4390 -0.6678 14 8 2.3622 -2.3239 -0.5943 15 7 4.1138 -3.2640 -1.5843 16 6 3.2492 -4.0224 -2.4917 17 6 4.1119 -4.8744 -3.4249 18 6 3.2089 -5.6660 -4.3730 19 6 4.0586 -6.5047 -5.2926 20 1 5.1351 -6.4763 -5.2088 21 6 3.4618 -7.3092 -6.2401 22 7 4.2034 -8.0415 -7.0422 23 14 1.6001 -7.3589 -6.3845 24 1 1.1501 -6.3188 -7.3441 25 1 1.1769 -8.6968 -6.8701 26 1 0.9935 -7.1005 -5.0539 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 4.2727 0.3851 2.9257 35 1 6.7146 0.3108 2.6389 36 1 7.7103 -1.0248 0.8286 37 1 6.2673 -2.2925 -0.7074 38 1 5.0778 -3.3555 -1.6431 39 1 2.5926 -4.6702 -1.9111 40 1 2.6481 -3.3316 -3.0830 41 1 4.7684 -4.2263 -4.0055 42 1 4.7133 -5.5651 -2.8340 43 1 2.5522 -6.3141 -3.7928 44 1 2.6079 -4.9749 -4.9639 45 1 3.7835 -8.6072 -7.7091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171502200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:40 Heat of formation + Delta-G solvation = -106.019046 kcal Electronic energy + Delta-G solvation = -27677.502528 eV Core-core repulsion = 23786.455531 eV Total energy + Delta-G solvation = -3891.046997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.54975 -39.54992 -38.06168 -37.12425 -36.87552 -35.88960 -35.22417 -33.60722 -32.47816 -32.17512 -29.01026 -28.28496 -25.68157 -24.41452 -24.03746 -23.30686 -22.26730 -21.56153 -19.94273 -19.42589 -18.88817 -18.10332 -17.46324 -17.31251 -16.89499 -16.83346 -16.36096 -16.05886 -15.88526 -15.71960 -15.56132 -15.12623 -14.78066 -14.53731 -14.23314 -14.14107 -13.96551 -13.81128 -13.62208 -13.44144 -13.21753 -13.05556 -12.93270 -12.79636 -12.68687 -12.62919 -12.39462 -12.22793 -11.95447 -11.84905 -11.74294 -11.58407 -11.33082 -11.17633 -11.01671 -10.76038 -10.45353 -10.28671 -10.03241 -8.29519 -6.33122 -0.87241 -0.55462 -0.01733 1.36402 1.39154 1.50355 1.62703 1.90123 1.99207 2.36267 2.48222 2.88237 3.06616 3.24488 3.45942 3.62038 3.64710 3.83747 3.99178 4.07516 4.20020 4.22186 4.24490 4.29758 4.44840 4.49401 4.57121 4.64065 4.68350 4.72212 4.85456 4.88287 4.89202 4.96793 5.03837 5.06891 5.10600 5.15817 5.24259 5.31550 5.47727 5.55816 5.65090 5.69709 6.27196 6.33453 6.75133 6.98395 7.31854 8.86829 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.002832 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.587829 B = 9883.753250 C =11107.995491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.547 4.547 3 C -0.146 4.146 4 S 2.496 3.504 5 O -0.977 6.977 6 O -0.965 6.965 7 C -0.623 4.623 8 C -0.043 4.043 9 C -0.106 4.106 10 C -0.066 4.066 11 C -0.103 4.103 12 C -0.066 4.066 13 C 0.526 3.474 14 O -0.544 6.544 15 N -0.700 5.700 16 C 0.124 3.876 17 C -0.101 4.101 18 C -0.013 4.013 19 C -0.529 4.529 20 H 0.039 0.961 21 C 0.005 3.995 22 N -0.950 5.950 23 Si 0.945 3.055 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.249 1.249 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.151 0.849 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.178 0.822 37 H 0.160 0.840 38 H 0.415 0.585 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.018 0.982 44 H 0.022 0.978 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 23.992 18.694 30.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.660 4.660 3 C -0.204 4.204 4 S 2.680 3.320 5 O -0.974 6.974 6 O -0.962 6.962 7 C -0.712 4.712 8 C -0.062 4.062 9 C -0.125 4.125 10 C -0.083 4.083 11 C -0.123 4.123 12 C -0.070 4.070 13 C 0.313 3.687 14 O -0.425 6.425 15 N -0.351 5.351 16 C 0.000 4.000 17 C -0.139 4.139 18 C -0.051 4.051 19 C -0.567 4.567 20 H 0.057 0.943 21 C -0.192 4.192 22 N -0.591 5.591 23 Si 0.769 3.231 24 H -0.191 1.191 25 H -0.212 1.212 26 H -0.173 1.173 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.169 0.831 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.174 0.826 35 H 0.192 0.808 36 H 0.195 0.805 37 H 0.178 0.822 38 H 0.254 0.746 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.041 0.959 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.989 23.568 19.301 30.527 hybrid contribution 0.231 -0.726 -1.151 1.380 sum 2.219 22.842 18.150 29.259 Atomic orbital electron populations 1.21715 0.89658 1.03613 1.05563 1.30014 1.07080 1.09472 1.19421 1.21809 1.02120 0.90887 1.05605 1.05346 0.74870 0.74958 0.76826 1.93458 1.85412 1.71547 1.47024 1.93554 1.81526 1.33870 1.87268 1.30522 1.25988 1.09204 1.05454 1.21306 0.94828 0.94204 0.95870 1.22002 0.94234 0.98008 0.98209 1.21944 1.02338 0.92123 0.91937 1.21845 0.90939 0.99002 1.00465 1.19531 0.95524 0.97149 0.94763 1.18830 0.88022 0.80685 0.81154 1.90779 1.15362 1.65940 1.70396 1.45754 1.11591 1.43440 1.34360 1.21446 0.93208 0.94297 0.91012 1.21498 0.98157 0.97802 0.96475 1.19468 0.95801 0.95196 0.94619 1.21465 0.94072 1.24590 1.16606 0.94263 1.25963 1.03440 0.94716 0.95053 1.70056 1.37795 1.29192 1.22086 0.85726 0.79957 0.77633 0.79782 1.19054 1.21211 1.17268 0.90450 0.87908 0.92090 0.83137 0.90663 0.88616 0.90118 0.82563 0.80785 0.80487 0.82236 0.74640 0.92337 0.91040 0.91105 0.91820 0.96327 0.95919 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.20 71.98 0.66 -2.23 16 2 C -0.55 -11.66 2.69 30.60 0.08 -11.57 16 3 C -0.15 -2.14 8.99 71.98 0.65 -1.50 16 4 S 2.50 68.27 4.00 -56.49 -0.23 68.04 16 5 O -0.98 -28.04 16.45 -127.65 -2.10 -30.14 16 6 O -0.96 -35.60 14.88 -118.17 -1.76 -37.36 16 7 C -0.62 -14.05 5.08 22.53 0.11 -13.94 16 8 C -0.04 -0.71 9.49 22.23 0.21 -0.50 16 9 C -0.11 -1.03 10.04 22.33 0.22 -0.80 16 10 C -0.07 -0.58 10.03 22.23 0.22 -0.35 16 11 C -0.10 -1.43 9.53 22.53 0.21 -1.21 16 12 C -0.07 -1.44 5.86 -20.09 -0.12 -1.55 16 13 C 0.53 14.36 7.38 86.79 0.64 15.00 16 14 O -0.54 -17.89 9.08 20.02 0.18 -17.71 16 15 N -0.70 -17.25 5.51 -466.00 -2.57 -19.81 16 16 C 0.12 3.74 5.67 86.38 0.49 4.23 16 17 C -0.10 -3.48 5.27 30.59 0.16 -3.32 16 18 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 19 C -0.53 -29.51 9.66 25.60 0.25 -29.26 16 20 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 21 C 0.01 0.30 5.47 84.66 0.46 0.76 16 22 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 23 Si 0.95 44.03 27.47 68.60 1.88 45.91 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.15 3.49 5.51 -2.39 -0.01 3.48 16 31 H 0.07 0.94 7.71 -2.39 -0.02 0.92 16 32 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.08 1.08 8.01 -2.39 -0.02 1.06 16 34 H 0.16 2.28 7.21 -2.91 -0.02 2.26 16 35 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 36 H 0.18 0.22 8.06 -2.91 -0.02 0.19 16 37 H 0.16 1.39 6.45 -2.91 -0.02 1.37 16 38 H 0.42 7.47 6.54 -92.70 -0.61 6.86 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 44 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 45 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -81.68 374.26 0.44 -81.24 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.34 Total: 15.12 kcal Atomic # 6 Polarization: -51.09 SS G_CDS: 4.38 Total: -46.71 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -2.27 Total: -78.41 kcal Atomic # 8 Polarization: -81.53 SS G_CDS: -3.68 Total: -85.21 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 16 Polarization: 68.27 SS G_CDS: -0.23 Total: 68.04 kcal Total: -81.68 0.44 -81.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171502200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.775 kcal (2) G-P(sol) polarization free energy of solvation -81.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds