Wall clock time and date at job start Tue Mar 31 2020 23:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08988 * 109.51249 * 2 1 4 4 C 1.53706 * 109.65589 * 239.84292 * 2 1 3 5 5 N 1.47158 * 108.16453 * 292.57293 * 4 2 1 6 6 S 1.65595 * 120.98399 * 129.43428 * 5 4 2 7 7 O 1.42106 * 104.27874 * 343.54464 * 6 5 4 8 8 O 1.42097 * 104.27723 * 215.68929 * 6 5 4 9 9 C 1.81393 * 104.45118 * 99.61499 * 6 5 4 10 10 C 1.52999 * 109.47473 * 174.82353 * 9 6 5 11 11 C 1.50693 * 109.47371 * 180.02562 * 10 9 6 12 12 H 1.07995 * 120.00296 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99918 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99789 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00047 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.46968 * 89.99842 * 15 13 11 17 17 H 1.48499 * 109.46956 * 209.99873 * 15 13 11 18 18 H 1.48497 * 109.46873 * 329.99716 * 15 13 11 19 19 C 1.47153 * 118.03374 * 309.16514 * 5 4 2 20 20 H 1.09003 * 109.67942 * 291.05989 * 19 5 4 21 21 C 1.50695 * 109.68144 * 170.50637 * 19 5 4 22 22 C 1.38237 * 120.00436 * 271.09247 * 21 19 5 23 23 C 1.38228 * 120.00418 * 179.76797 * 22 21 19 24 24 C 1.38238 * 119.99902 * 0.48473 * 23 22 21 25 25 C 1.38240 * 120.00014 * 359.78975 * 24 23 22 26 26 C 1.38234 * 119.99794 * 359.95603 * 25 24 23 27 27 C 1.53291 * 108.38768 * 50.77977 * 19 5 4 28 28 O 1.42963 * 109.50817 * 120.10044 * 2 1 3 29 29 H 1.09002 * 109.47320 * 299.90074 * 1 2 3 30 30 H 1.09007 * 109.47030 * 59.90189 * 1 2 3 31 31 H 1.09002 * 109.47203 * 179.89438 * 1 2 3 32 32 H 1.09000 * 109.83911 * 172.89886 * 4 2 1 33 33 H 1.08998 * 109.75221 * 52.20224 * 4 2 1 34 34 H 1.08998 * 109.47201 * 54.82302 * 9 6 5 35 35 H 1.08996 * 109.47392 * 294.82385 * 9 6 5 36 36 H 1.09007 * 109.47176 * 300.00138 * 10 9 6 37 37 H 1.08998 * 109.46949 * 59.99794 * 10 9 6 38 38 H 0.96997 * 120.00290 * 180.02562 * 14 13 11 39 39 H 1.08003 * 119.99511 * 359.97438 * 22 21 19 40 40 H 1.08002 * 120.00425 * 180.25660 * 23 22 21 41 41 H 1.08006 * 120.00039 * 179.77283 * 24 23 22 42 42 H 1.07997 * 119.99448 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.99738 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.50790 * 67.62552 * 27 19 5 45 45 H 1.09001 * 109.51345 * 187.72203 * 27 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0471 -0.7272 -1.2516 5 7 1.6959 -2.1513 -1.1326 6 16 0.9289 -2.9461 -2.3663 7 8 0.4210 -1.9062 -3.1910 8 8 0.0544 -3.8528 -1.7088 9 6 2.2540 -3.8448 -3.2189 10 6 1.6497 -4.7285 -4.3119 11 6 2.7505 -5.4756 -5.0197 12 1 3.7783 -5.3345 -4.7197 13 6 2.4453 -6.3400 -6.0497 14 7 3.4060 -6.9924 -6.6670 15 14 0.6674 -6.5846 -6.5681 16 1 0.3195 -5.5993 -7.6232 17 1 0.4912 -7.9605 -7.0981 18 1 -0.2216 -6.3883 -5.3950 19 6 2.0520 -2.8497 0.1127 20 1 3.1351 -2.9531 0.1788 21 6 1.4092 -4.2126 0.1319 22 6 0.1398 -4.3708 0.6558 23 6 -0.4517 -5.6201 0.6690 24 6 0.2301 -6.7130 0.1674 25 6 1.5018 -6.5558 -0.3513 26 6 2.0912 -5.3056 -0.3693 27 6 1.5395 -2.0205 1.2957 28 8 2.0075 -0.6758 1.1658 29 1 -0.3634 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8892 31 1 -0.3634 -1.0277 -0.0019 32 1 3.1297 -0.6207 -1.3206 33 1 1.5789 -0.3068 -2.1416 34 1 2.7896 -4.4679 -2.5026 35 1 2.9452 -3.1322 -3.6687 36 1 0.9584 -5.4413 -3.8620 37 1 1.1141 -4.1055 -5.0281 38 1 3.1915 -7.6002 -7.3918 39 1 -0.3911 -3.5177 1.0518 40 1 -1.4452 -5.7430 1.0746 41 1 -0.2306 -7.6898 0.1811 42 1 2.0345 -7.4098 -0.7428 43 1 3.0849 -5.1829 -0.7742 44 1 0.4495 -2.0278 1.3004 45 1 1.9104 -2.4474 2.2275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174093315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:00 Heat of formation + Delta-G solvation = -67.799700 kcal Electronic energy + Delta-G solvation = -29648.519313 eV Core-core repulsion = 25759.129631 eV Total energy + Delta-G solvation = -3889.389681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.32715 -38.73841 -36.61437 -35.52198 -35.03414 -33.96124 -33.16516 -31.53409 -30.68414 -30.49789 -28.11297 -26.18262 -25.70834 -24.41467 -22.40318 -21.45658 -21.22365 -20.10753 -18.54603 -17.82000 -17.05731 -16.98573 -16.53095 -15.92597 -15.72188 -15.38960 -15.05261 -14.92787 -14.78907 -14.30892 -14.19442 -13.95802 -13.63102 -13.15937 -13.07394 -12.80511 -12.77353 -12.56749 -12.27008 -11.89638 -11.84323 -11.76775 -11.66391 -11.52362 -11.29798 -11.24232 -11.16548 -11.01341 -10.79887 -10.49758 -10.36990 -10.24125 -10.12237 -9.68802 -9.40105 -8.74146 -8.67173 -8.56860 -8.29833 -6.17477 -4.18163 0.65297 1.48851 1.73856 2.88869 3.24571 3.32022 3.36791 3.60336 4.04336 4.19528 4.34736 4.38767 4.45782 4.64908 4.71101 4.83366 4.88336 5.00653 5.13715 5.16374 5.21213 5.27362 5.31097 5.39637 5.47071 5.51829 5.56527 5.59562 5.65301 5.69155 5.72667 5.92240 6.01207 6.03533 6.18511 6.28268 6.31268 6.50419 6.69939 6.70856 6.80333 6.82386 6.95636 6.96905 7.27783 7.54592 8.36321 8.83864 9.42635 10.94988 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004909 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.656860 B = 5702.932945 C = 6733.509664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.078 3.922 3 H 0.113 0.887 4 C 0.086 3.914 5 N -1.000 6.000 6 S 2.579 3.421 7 O -0.971 6.971 8 O -0.938 6.938 9 C -0.586 4.586 10 C -0.001 4.001 11 C -0.516 4.516 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.866 3.134 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.168 3.832 20 H 0.090 0.910 21 C -0.111 4.111 22 C -0.050 4.050 23 C -0.115 4.115 24 C -0.107 4.107 25 C -0.110 4.110 26 C -0.114 4.114 27 C 0.052 3.948 28 O -0.373 6.373 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.034 0.966 37 H 0.022 0.978 38 H 0.266 0.734 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.066 0.934 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 9.718 18.030 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.019 3.981 3 H 0.130 0.870 4 C -0.039 4.039 5 N -0.837 5.837 6 S 2.680 3.320 7 O -0.962 6.962 8 O -0.928 6.928 9 C -0.719 4.719 10 C -0.040 4.040 11 C -0.555 4.555 12 H 0.095 0.905 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.692 3.308 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.186 1.186 19 C 0.062 3.938 20 H 0.108 0.892 21 C -0.113 4.113 22 C -0.069 4.069 23 C -0.133 4.133 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.132 4.132 27 C -0.026 4.026 28 O -0.291 6.291 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.084 0.916 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.959 9.769 17.833 20.929 hybrid contribution -0.304 -0.540 -0.925 1.114 sum -5.264 9.229 16.908 19.969 Atomic orbital electron populations 1.22418 0.96003 1.03125 1.02955 1.22580 0.94022 0.96329 0.85174 0.86965 1.22260 1.01288 0.80378 1.00012 1.58137 1.78233 1.18418 1.28895 1.06054 0.77435 0.74857 0.73690 1.93503 1.78022 1.56112 1.68560 1.93724 1.62581 1.65242 1.71289 1.30446 1.17047 1.12493 1.11931 1.19339 0.97954 0.94527 0.92216 1.20833 0.93663 1.24353 1.16668 0.90477 1.24959 0.97174 0.95057 0.95744 1.69877 1.32100 1.27993 1.23416 0.86971 0.85879 0.78078 0.79848 1.19730 1.20724 1.18599 1.20376 0.99630 0.88855 0.84918 0.89205 1.19558 0.95909 0.93270 1.02524 1.20630 0.93202 0.96801 0.96278 1.20917 0.99099 0.92941 1.00340 1.21099 0.94918 0.98552 0.97941 1.21035 0.95634 0.97206 0.98983 1.21022 0.99874 0.92840 0.99499 1.23067 0.99636 0.82307 0.97577 1.87990 1.72486 1.25284 1.43322 0.91677 0.90933 0.91931 0.90537 0.87506 0.85589 0.86133 0.94826 0.96027 0.92406 0.86857 0.86715 0.86573 0.85895 0.85944 0.91630 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 8.82 37.16 0.33 -1.59 16 2 C 0.08 0.78 3.93 -26.36 -0.10 0.68 16 3 H 0.11 0.87 8.14 -51.94 -0.42 0.45 16 4 C 0.09 0.98 6.11 -3.32 -0.02 0.96 16 5 N -1.00 -13.34 2.77 -107.02 -0.30 -13.64 16 6 S 2.58 44.83 4.93 -107.50 -0.53 44.30 16 7 O -0.97 -19.14 16.39 -57.54 -0.94 -20.08 16 8 O -0.94 -17.41 12.50 -57.54 -0.72 -18.13 16 9 C -0.59 -11.13 5.94 37.16 0.22 -10.91 16 10 C 0.00 -0.03 4.05 -27.89 -0.11 -0.14 16 11 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 12 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 15 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 19 C 0.17 1.99 3.34 -68.58 -0.23 1.76 16 20 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 21 C -0.11 -1.49 2.83 -104.62 -0.30 -1.78 16 22 C -0.05 -0.67 6.94 -39.59 -0.27 -0.94 16 23 C -0.11 -1.52 9.93 -39.58 -0.39 -1.92 16 24 C -0.11 -1.47 10.05 -39.58 -0.40 -1.86 16 25 C -0.11 -1.61 10.05 -39.58 -0.40 -2.01 16 26 C -0.11 -1.62 7.51 -39.58 -0.30 -1.92 16 27 C 0.05 0.54 5.45 37.31 0.20 0.74 16 28 O -0.37 -4.10 10.58 -35.23 -0.37 -4.48 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.73 6.11 -51.93 -0.32 0.42 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.27 6.68 -51.93 -0.35 0.92 16 34 H 0.13 2.20 5.32 -51.93 -0.28 1.92 16 35 H 0.12 2.14 8.14 -51.93 -0.42 1.72 16 36 H 0.03 0.81 7.20 -51.92 -0.37 0.44 16 37 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.11 1.31 6.01 -52.48 -0.32 1.00 16 40 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.12 1.61 6.88 -52.49 -0.36 1.25 16 44 H 0.07 0.68 4.19 -51.93 -0.22 0.46 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 356.83 15.07 5.38 5.38 Total: -1.00 -33.78 356.83 -10.00 -43.78 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.41 Total: 3.85 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: -2.20 Total: -31.64 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.48 Total: -39.86 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -2.04 Total: -42.69 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 44.83 SS G_CDS: -0.53 Total: 44.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.78 -10.00 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174093315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.020 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds