Wall clock time and date at job start Tue Mar 31 2020 23:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08988 * 109.51249 * 2 1 4 4 C 1.53706 * 109.65589 * 239.84292 * 2 1 3 5 5 N 1.47158 * 108.16453 * 292.57293 * 4 2 1 6 6 S 1.65595 * 120.98399 * 129.43428 * 5 4 2 7 7 O 1.42106 * 104.27874 * 343.54464 * 6 5 4 8 8 O 1.42097 * 104.27723 * 215.68929 * 6 5 4 9 9 C 1.81393 * 104.45118 * 99.61499 * 6 5 4 10 10 C 1.52999 * 109.47473 * 174.82353 * 9 6 5 11 11 C 1.50693 * 109.47371 * 180.02562 * 10 9 6 12 12 H 1.07995 * 120.00296 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99918 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99789 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00047 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.46968 * 89.99842 * 15 13 11 17 17 H 1.48499 * 109.46956 * 209.99873 * 15 13 11 18 18 H 1.48497 * 109.46873 * 329.99716 * 15 13 11 19 19 C 1.47153 * 118.03374 * 309.16514 * 5 4 2 20 20 H 1.09003 * 109.67942 * 291.05989 * 19 5 4 21 21 C 1.50695 * 109.68144 * 170.50637 * 19 5 4 22 22 C 1.38237 * 120.00436 * 271.09247 * 21 19 5 23 23 C 1.38228 * 120.00418 * 179.76797 * 22 21 19 24 24 C 1.38238 * 119.99902 * 0.48473 * 23 22 21 25 25 C 1.38240 * 120.00014 * 359.78975 * 24 23 22 26 26 C 1.38234 * 119.99794 * 359.95603 * 25 24 23 27 27 C 1.53291 * 108.38768 * 50.77977 * 19 5 4 28 28 O 1.42963 * 109.50817 * 120.10044 * 2 1 3 29 29 H 1.09002 * 109.47320 * 299.90074 * 1 2 3 30 30 H 1.09007 * 109.47030 * 59.90189 * 1 2 3 31 31 H 1.09002 * 109.47203 * 179.89438 * 1 2 3 32 32 H 1.09000 * 109.83911 * 172.89886 * 4 2 1 33 33 H 1.08998 * 109.75221 * 52.20224 * 4 2 1 34 34 H 1.08998 * 109.47201 * 54.82302 * 9 6 5 35 35 H 1.08996 * 109.47392 * 294.82385 * 9 6 5 36 36 H 1.09007 * 109.47176 * 300.00138 * 10 9 6 37 37 H 1.08998 * 109.46949 * 59.99794 * 10 9 6 38 38 H 0.96997 * 120.00290 * 180.02562 * 14 13 11 39 39 H 1.08003 * 119.99511 * 359.97438 * 22 21 19 40 40 H 1.08002 * 120.00425 * 180.25660 * 23 22 21 41 41 H 1.08006 * 120.00039 * 179.77283 * 24 23 22 42 42 H 1.07997 * 119.99448 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.99738 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.50790 * 67.62552 * 27 19 5 45 45 H 1.09001 * 109.51345 * 187.72203 * 27 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0471 -0.7272 -1.2516 5 7 1.6959 -2.1513 -1.1326 6 16 0.9289 -2.9461 -2.3663 7 8 0.4210 -1.9062 -3.1910 8 8 0.0544 -3.8528 -1.7088 9 6 2.2540 -3.8448 -3.2189 10 6 1.6497 -4.7285 -4.3119 11 6 2.7505 -5.4756 -5.0197 12 1 3.7783 -5.3345 -4.7197 13 6 2.4453 -6.3400 -6.0497 14 7 3.4060 -6.9924 -6.6670 15 14 0.6674 -6.5846 -6.5681 16 1 0.3195 -5.5993 -7.6232 17 1 0.4912 -7.9605 -7.0981 18 1 -0.2216 -6.3883 -5.3950 19 6 2.0520 -2.8497 0.1127 20 1 3.1351 -2.9531 0.1788 21 6 1.4092 -4.2126 0.1319 22 6 0.1398 -4.3708 0.6558 23 6 -0.4517 -5.6201 0.6690 24 6 0.2301 -6.7130 0.1674 25 6 1.5018 -6.5558 -0.3513 26 6 2.0912 -5.3056 -0.3693 27 6 1.5395 -2.0205 1.2957 28 8 2.0075 -0.6758 1.1658 29 1 -0.3634 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8892 31 1 -0.3634 -1.0277 -0.0019 32 1 3.1297 -0.6207 -1.3206 33 1 1.5789 -0.3068 -2.1416 34 1 2.7896 -4.4679 -2.5026 35 1 2.9452 -3.1322 -3.6687 36 1 0.9584 -5.4413 -3.8620 37 1 1.1141 -4.1055 -5.0281 38 1 3.1915 -7.6002 -7.3918 39 1 -0.3911 -3.5177 1.0518 40 1 -1.4452 -5.7430 1.0746 41 1 -0.2306 -7.6898 0.1811 42 1 2.0345 -7.4098 -0.7428 43 1 3.0849 -5.1829 -0.7742 44 1 0.4495 -2.0278 1.3004 45 1 1.9104 -2.4474 2.2275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174093315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:59 Heat of formation + Delta-G solvation = -90.277270 kcal Electronic energy + Delta-G solvation = -29649.494013 eV Core-core repulsion = 25759.129631 eV Total energy + Delta-G solvation = -3890.364382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.25659 -39.71446 -38.02162 -36.94477 -36.03537 -35.91796 -34.06558 -33.51629 -31.73668 -31.43727 -29.01692 -27.91162 -26.82992 -25.33004 -23.46343 -23.10819 -22.39825 -21.13998 -19.79675 -19.32243 -18.66970 -17.96761 -17.62486 -17.19892 -16.71084 -16.52201 -16.46923 -16.11288 -15.95600 -15.88282 -15.31520 -15.02750 -14.93240 -14.84090 -14.13248 -14.01972 -13.92896 -13.81660 -13.56828 -13.18878 -13.12063 -13.07065 -13.00173 -12.93482 -12.59654 -12.52434 -12.36280 -12.27225 -12.00305 -11.98228 -11.75158 -11.73625 -11.37183 -11.27171 -11.02978 -10.86767 -9.76314 -9.62573 -9.36403 -8.38704 -6.43820 -0.73287 0.44178 0.67877 1.27601 1.29722 1.39866 1.67540 2.26448 2.78753 2.82217 2.95087 2.99378 3.19991 3.43081 3.68964 3.80264 3.89281 3.98169 4.01598 4.06944 4.19436 4.24000 4.31497 4.37057 4.40694 4.52382 4.58313 4.64483 4.67972 4.73060 4.81335 4.89464 4.97536 5.03350 5.06320 5.14214 5.19559 5.24979 5.26879 5.44911 5.51578 5.65960 5.68649 5.75962 6.15270 6.17272 6.26316 6.61325 7.20326 8.77003 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004909 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.656860 B = 5702.932945 C = 6733.509664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.080 3.920 3 H 0.140 0.860 4 C 0.076 3.924 5 N -0.991 5.991 6 S 2.604 3.396 7 O -0.994 6.994 8 O -0.949 6.949 9 C -0.598 4.598 10 C -0.004 4.004 11 C -0.523 4.523 12 H 0.048 0.952 13 C 0.018 3.982 14 N -0.938 5.938 15 Si 0.920 3.080 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.252 1.252 19 C 0.166 3.834 20 H 0.104 0.896 21 C -0.114 4.114 22 C -0.058 4.058 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.134 4.134 26 C -0.130 4.130 27 C 0.054 3.946 28 O -0.376 6.376 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.031 0.969 37 H 0.020 0.980 38 H 0.270 0.730 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.067 0.933 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 11.245 19.721 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.021 3.979 3 H 0.158 0.842 4 C -0.049 4.049 5 N -0.830 5.830 6 S 2.703 3.297 7 O -0.985 6.985 8 O -0.939 6.939 9 C -0.728 4.728 10 C -0.043 4.043 11 C -0.562 4.562 12 H 0.066 0.934 13 C -0.180 4.180 14 N -0.578 5.578 15 Si 0.743 3.257 16 H -0.186 1.186 17 H -0.196 1.196 18 H -0.176 1.176 19 C 0.060 3.940 20 H 0.122 0.878 21 C -0.116 4.116 22 C -0.076 4.076 23 C -0.142 4.142 24 C -0.136 4.136 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.024 4.024 28 O -0.294 6.294 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.049 0.951 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.085 0.915 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.197 11.290 19.508 23.376 hybrid contribution 0.163 -0.972 -1.361 1.680 sum -6.034 10.318 18.147 21.730 Atomic orbital electron populations 1.22444 0.96269 1.02247 1.03710 1.22717 0.93848 0.97306 0.84037 0.84212 1.22573 1.02624 0.78899 1.00770 1.57824 1.78075 1.19150 1.27943 1.05151 0.76713 0.74207 0.73667 1.93471 1.78394 1.56662 1.69932 1.93710 1.62992 1.65950 1.71285 1.30512 1.18515 1.12563 1.11243 1.19224 0.96793 0.94921 0.93400 1.21119 0.93643 1.24579 1.16852 0.93384 1.25795 1.01367 0.94919 0.95945 1.69998 1.34327 1.29109 1.24370 0.86101 0.80934 0.78702 0.80000 1.18648 1.19633 1.17561 1.20607 1.00460 0.88296 0.84604 0.87799 1.19711 0.96057 0.93692 1.02162 1.20938 0.93258 0.97476 0.95955 1.21269 1.00083 0.92824 1.00004 1.21375 0.94724 0.99723 0.97770 1.21235 0.96470 0.97563 0.99927 1.21187 1.00302 0.93257 1.00064 1.23138 0.99814 0.81942 0.97478 1.88000 1.72579 1.25354 1.43493 0.90181 0.91006 0.93579 0.88623 0.88103 0.84608 0.85426 0.95092 0.96168 0.92097 0.85164 0.84545 0.84983 0.86044 0.85708 0.91476 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.38 8.82 71.98 0.63 -2.74 16 2 C 0.08 1.35 3.93 30.83 0.12 1.47 16 3 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.08 1.54 6.11 86.49 0.53 2.07 16 5 N -0.99 -24.50 2.77 -492.50 -1.36 -25.87 16 6 S 2.60 87.66 4.93 -56.49 -0.28 87.38 16 7 O -0.99 -38.14 16.39 -127.65 -2.09 -40.24 16 8 O -0.95 -34.09 12.50 -127.65 -1.60 -35.69 16 9 C -0.60 -22.64 5.94 71.98 0.43 -22.21 16 10 C 0.00 -0.21 4.05 29.85 0.12 -0.09 16 11 C -0.52 -29.83 9.66 25.60 0.25 -29.58 16 12 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 13 C 0.02 1.08 5.47 84.66 0.46 1.54 16 14 N -0.94 -57.77 13.96 21.45 0.30 -57.47 16 15 Si 0.92 44.25 27.47 68.60 1.88 46.14 16 16 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 17 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.25 -11.62 6.54 99.48 0.65 -10.97 16 19 C 0.17 3.55 3.34 44.22 0.15 3.70 16 20 H 0.10 1.96 8.09 -2.39 -0.02 1.94 16 21 C -0.11 -2.90 2.83 -19.87 -0.06 -2.95 16 22 C -0.06 -1.42 6.94 22.27 0.15 -1.27 16 23 C -0.12 -3.08 9.93 22.27 0.22 -2.86 16 24 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 25 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 26 C -0.13 -3.64 7.51 22.27 0.17 -3.48 16 27 C 0.05 0.96 5.45 72.08 0.39 1.35 16 28 O -0.38 -6.97 10.58 -148.98 -1.58 -8.55 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.05 0.97 6.11 -2.39 -0.01 0.96 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 2.20 6.68 -2.39 -0.02 2.19 16 34 H 0.14 4.77 5.32 -2.39 -0.01 4.76 16 35 H 0.13 4.54 8.14 -2.39 -0.02 4.52 16 36 H 0.03 1.49 7.20 -2.38 -0.02 1.47 16 37 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.13 2.69 6.01 -2.91 -0.02 2.68 16 40 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 42 H 0.12 3.41 8.06 -2.91 -0.02 3.38 16 43 H 0.13 3.30 6.88 -2.91 -0.02 3.28 16 44 H 0.07 1.18 4.19 -2.39 -0.01 1.17 16 45 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.60 356.83 0.23 -72.37 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.94 Total: 23.57 kcal Atomic # 6 Polarization: -65.66 SS G_CDS: 4.02 Total: -61.64 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.07 Total: -83.34 kcal Atomic # 8 Polarization: -79.21 SS G_CDS: -5.27 Total: -84.47 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Atomic # 16 Polarization: 87.66 SS G_CDS: -0.28 Total: 87.38 kcal Total: -72.60 0.23 -72.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174093315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.908 kcal (2) G-P(sol) polarization free energy of solvation -72.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds