Wall clock time and date at job start Tue Mar 31 2020 23:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.51264 * 2 1 4 4 C 1.53300 * 109.50767 * 120.09640 * 2 1 3 5 5 N 1.47148 * 108.38382 * 172.27829 * 4 2 1 6 6 S 1.65603 * 120.98453 * 129.43966 * 5 4 2 7 7 O 1.42109 * 104.27540 * 343.85211 * 6 5 4 8 8 O 1.42102 * 104.28050 * 215.99863 * 6 5 4 9 9 C 1.81398 * 104.44933 * 99.92006 * 6 5 4 10 10 C 1.53003 * 109.47029 * 180.02562 * 9 6 5 11 11 C 1.50705 * 109.46829 * 180.02562 * 10 9 6 12 12 H 1.07995 * 120.00182 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99937 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99779 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00155 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47037 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46826 * 120.00182 * 15 13 11 18 18 H 1.48497 * 109.47090 * 239.99925 * 15 13 11 19 19 C 1.47148 * 118.03591 * 309.71595 * 5 4 2 20 20 H 1.08998 * 109.68300 * 290.56037 * 19 5 4 21 21 C 1.50704 * 109.68460 * 170.00730 * 19 5 4 22 22 C 1.38235 * 119.99931 * 271.27485 * 21 19 5 23 23 C 1.38237 * 119.99942 * 179.80649 * 22 21 19 24 24 C 1.38230 * 119.99893 * 0.41651 * 23 22 21 25 25 C 1.38237 * 120.00065 * 359.81227 * 24 23 22 26 26 C 1.38228 * 120.00075 * 91.53871 * 21 19 5 27 27 C 1.52878 * 108.61058 * 50.22797 * 19 5 4 28 28 O 1.42953 * 109.55677 * 239.86652 * 2 1 3 29 29 H 1.09000 * 109.47570 * 299.90521 * 1 2 3 30 30 H 1.09006 * 109.46956 * 59.90658 * 1 2 3 31 31 H 1.09002 * 109.46905 * 179.89961 * 1 2 3 32 32 H 1.08999 * 109.68482 * 52.55371 * 4 2 1 33 33 H 1.08999 * 109.71097 * 292.01772 * 4 2 1 34 34 H 1.09007 * 109.46537 * 60.00533 * 9 6 5 35 35 H 1.08993 * 109.47503 * 300.00327 * 9 6 5 36 36 H 1.08994 * 109.47054 * 60.00378 * 10 9 6 37 37 H 1.09003 * 109.47025 * 300.00259 * 10 9 6 38 38 H 0.97008 * 119.99921 * 179.97438 * 14 13 11 39 39 H 1.07999 * 120.00168 * 359.97438 * 22 21 19 40 40 H 1.08007 * 119.99731 * 180.20062 * 23 22 21 41 41 H 1.08001 * 119.99708 * 179.78662 * 24 23 22 42 42 H 1.08004 * 119.99705 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.00181 * 359.97438 * 26 21 19 44 44 H 1.08999 * 109.58703 * 187.92317 * 27 19 5 45 45 H 1.09003 * 109.41019 * 67.83687 * 27 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 1.2502 5 7 3.5012 -0.8746 1.1348 6 16 4.5056 -0.4155 2.3688 7 8 3.6940 0.4106 3.1924 8 8 5.6524 0.1064 1.7116 9 6 4.9106 -1.9638 3.2227 10 6 5.8445 -1.6688 4.3982 11 6 6.1814 -2.9552 5.1072 12 1 5.7709 -3.8898 4.7544 13 6 7.0146 -2.9393 6.2056 14 7 7.5157 -1.8013 6.6343 15 14 7.4328 -4.5339 7.0840 16 1 6.7482 -5.6653 6.4085 17 1 8.9015 -4.7501 7.0447 18 1 6.9818 -4.4539 8.4965 19 6 4.0420 -1.4388 -0.1119 20 1 3.7813 -2.4949 -0.1804 21 6 5.5409 -1.2831 -0.1313 22 6 6.1099 -0.1348 -0.6494 23 6 7.4846 0.0098 -0.6636 24 6 8.2906 -0.9977 -0.1675 25 6 7.7218 -2.1482 0.3463 26 6 6.3469 -2.2910 0.3639 27 6 3.4324 -0.6845 -1.2937 28 8 2.0085 -0.6762 -1.1650 29 1 -0.3634 0.5123 0.8908 30 1 -0.3633 0.5153 -0.8892 31 1 -0.3633 -1.0277 -0.0018 32 1 1.5764 -1.7076 1.3213 33 1 1.8021 -0.1397 2.1382 34 1 5.4040 -2.6435 2.5278 35 1 3.9951 -2.4246 3.5933 36 1 5.3507 -0.9893 5.0928 37 1 6.7602 -1.2077 4.0279 38 1 8.1016 -1.7900 7.4073 39 1 5.4803 0.6507 -1.0407 40 1 7.9290 0.9084 -1.0654 41 1 9.3647 -0.8863 -0.1817 42 1 8.3516 -2.9355 0.7335 43 1 5.9025 -3.1899 0.7652 44 1 3.7110 -1.1776 -2.2249 45 1 3.8033 0.3405 -1.2993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174093327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:04 Heat of formation + Delta-G solvation = -75.197803 kcal Electronic energy + Delta-G solvation = -29207.737544 eV Core-core repulsion = 25318.027056 eV Total energy + Delta-G solvation = -3889.710487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.15174 -38.62982 -36.49033 -35.40076 -34.98952 -33.89602 -33.44673 -31.25557 -30.74738 -30.57282 -27.71946 -26.09837 -25.47813 -23.77551 -22.39301 -21.59855 -21.45975 -20.66309 -18.48328 -17.63291 -16.89167 -16.62641 -16.37478 -16.10596 -15.61424 -15.18078 -15.03257 -14.72243 -14.64588 -14.53325 -14.39935 -13.72619 -13.45171 -13.02888 -12.96916 -12.69526 -12.55278 -12.45739 -12.36370 -11.96437 -11.74465 -11.73012 -11.54045 -11.38177 -11.20546 -11.10092 -10.97153 -10.94220 -10.75785 -10.51800 -10.38306 -10.33488 -10.16317 -9.73051 -9.26801 -8.68860 -8.53480 -8.49568 -8.24263 -6.12718 -4.17943 0.77680 1.53846 1.78038 3.00017 3.24018 3.31483 3.34787 3.54585 4.09019 4.29280 4.37710 4.44347 4.52155 4.71822 4.81502 4.88594 4.91959 5.04599 5.20020 5.22688 5.25885 5.30742 5.35793 5.46495 5.50535 5.53212 5.61118 5.66981 5.70998 5.75137 5.79639 5.92933 5.98883 6.07976 6.23096 6.33112 6.51265 6.57154 6.73359 6.75244 6.84649 7.01358 7.30733 7.32142 7.37483 7.80471 8.18060 8.85533 9.46693 10.98332 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.004483 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.833339 B = 6244.722922 C = 7562.257098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.063 0.937 4 C 0.087 3.913 5 N -1.004 6.004 6 S 2.581 3.419 7 O -0.972 6.972 8 O -0.939 6.939 9 C -0.591 4.591 10 C 0.034 3.966 11 C -0.517 4.517 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.167 3.833 20 H 0.089 0.911 21 C -0.110 4.110 22 C -0.050 4.050 23 C -0.114 4.114 24 C -0.106 4.106 25 C -0.111 4.111 26 C -0.114 4.114 27 C 0.057 3.943 28 O -0.376 6.376 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.029 0.971 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.106 0.894 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 1.631 -17.701 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.081 0.919 4 C -0.039 4.039 5 N -0.840 5.840 6 S 2.682 3.318 7 O -0.962 6.962 8 O -0.929 6.929 9 C -0.725 4.725 10 C -0.005 4.005 11 C -0.556 4.556 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.061 3.939 20 H 0.107 0.893 21 C -0.112 4.112 22 C -0.069 4.069 23 C -0.132 4.132 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.133 4.133 27 C -0.021 4.021 28 O -0.295 6.295 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.124 0.876 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.012 2.545 -17.515 19.428 hybrid contribution 0.453 -1.400 1.050 1.808 sum -7.559 1.146 -16.465 18.153 Atomic orbital electron populations 1.21743 0.92331 1.03234 1.02832 1.22433 0.95284 0.95442 0.85216 0.91880 1.22179 0.79818 1.01943 0.99954 1.58256 1.16387 1.80416 1.28964 1.06040 0.73912 0.78354 0.73492 1.93497 1.68799 1.65414 1.68515 1.93715 1.50062 1.77787 1.71367 1.30582 1.10356 1.19021 1.12499 1.18900 0.92912 0.99184 0.89552 1.21024 1.29324 0.92666 1.12602 0.92099 1.25054 0.95742 0.96557 0.97053 1.69972 1.32413 1.25209 1.25272 0.86449 0.78253 0.83262 0.79553 1.19641 1.20790 1.20794 1.20281 0.89910 0.98641 0.85021 0.89349 1.19541 0.92789 0.96306 1.02515 1.20644 0.94898 0.95120 0.96210 1.20919 0.93614 0.98378 1.00308 1.21083 0.99443 0.93967 0.97907 1.20999 0.94638 0.98140 0.99115 1.20982 0.94309 0.98362 0.99647 1.22975 0.80927 1.00499 0.97685 1.87925 1.20707 1.77598 1.43255 0.90601 0.91576 0.91500 0.90705 0.87518 0.86109 0.86719 0.95274 0.94887 0.92634 0.86806 0.86676 0.86567 0.86043 0.86093 0.87604 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.57 37.16 0.36 -0.85 16 2 C 0.08 0.83 3.40 -26.57 -0.09 0.74 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.09 1.07 5.99 -3.53 -0.02 1.05 16 5 N -1.00 -14.39 3.27 -107.49 -0.35 -14.74 16 6 S 2.58 47.90 4.94 -107.50 -0.53 47.37 16 7 O -0.97 -20.69 16.39 -57.54 -0.94 -21.64 16 8 O -0.94 -18.57 12.47 -57.54 -0.72 -19.29 16 9 C -0.59 -11.76 5.99 37.16 0.22 -11.54 16 10 C 0.03 0.87 4.98 -27.88 -0.14 0.73 16 11 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 15 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.17 2.10 3.33 -68.79 -0.23 1.87 16 20 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 21 C -0.11 -1.54 2.82 -104.62 -0.30 -1.83 16 22 C -0.05 -0.70 6.92 -39.58 -0.27 -0.97 16 23 C -0.11 -1.58 9.93 -39.58 -0.39 -1.97 16 24 C -0.11 -1.50 10.05 -39.58 -0.40 -1.89 16 25 C -0.11 -1.64 10.05 -39.58 -0.40 -2.04 16 26 C -0.11 -1.67 7.47 -39.59 -0.30 -1.96 16 27 C 0.06 0.63 5.83 37.09 0.22 0.84 16 28 O -0.38 -4.41 10.39 -35.23 -0.37 -4.78 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 1.39 6.68 -51.93 -0.35 1.04 16 34 H 0.12 2.19 5.30 -51.92 -0.27 1.92 16 35 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.11 1.40 6.01 -52.49 -0.32 1.08 16 40 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.12 1.60 6.97 -52.48 -0.37 1.23 16 44 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.67 6.06 -51.93 -0.31 0.35 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -34.22 365.09 -10.49 -44.71 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.65 Total: 3.35 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: -2.15 Total: -30.88 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.38 Total: -40.53 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -2.03 Total: -45.70 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 47.90 SS G_CDS: -0.53 Total: 47.37 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.22 -10.49 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174093327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.487 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds