Wall clock time and date at job start Tue Mar 31 2020 23:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.51264 * 2 1 4 4 C 1.53300 * 109.50767 * 120.09640 * 2 1 3 5 5 N 1.47148 * 108.38382 * 172.27829 * 4 2 1 6 6 S 1.65603 * 120.98453 * 129.43966 * 5 4 2 7 7 O 1.42109 * 104.27540 * 343.85211 * 6 5 4 8 8 O 1.42102 * 104.28050 * 215.99863 * 6 5 4 9 9 C 1.81398 * 104.44933 * 99.92006 * 6 5 4 10 10 C 1.53003 * 109.47029 * 180.02562 * 9 6 5 11 11 C 1.50705 * 109.46829 * 180.02562 * 10 9 6 12 12 H 1.07995 * 120.00182 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99937 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99779 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00155 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47037 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46826 * 120.00182 * 15 13 11 18 18 H 1.48497 * 109.47090 * 239.99925 * 15 13 11 19 19 C 1.47148 * 118.03591 * 309.71595 * 5 4 2 20 20 H 1.08998 * 109.68300 * 290.56037 * 19 5 4 21 21 C 1.50704 * 109.68460 * 170.00730 * 19 5 4 22 22 C 1.38235 * 119.99931 * 271.27485 * 21 19 5 23 23 C 1.38237 * 119.99942 * 179.80649 * 22 21 19 24 24 C 1.38230 * 119.99893 * 0.41651 * 23 22 21 25 25 C 1.38237 * 120.00065 * 359.81227 * 24 23 22 26 26 C 1.38228 * 120.00075 * 91.53871 * 21 19 5 27 27 C 1.52878 * 108.61058 * 50.22797 * 19 5 4 28 28 O 1.42953 * 109.55677 * 239.86652 * 2 1 3 29 29 H 1.09000 * 109.47570 * 299.90521 * 1 2 3 30 30 H 1.09006 * 109.46956 * 59.90658 * 1 2 3 31 31 H 1.09002 * 109.46905 * 179.89961 * 1 2 3 32 32 H 1.08999 * 109.68482 * 52.55371 * 4 2 1 33 33 H 1.08999 * 109.71097 * 292.01772 * 4 2 1 34 34 H 1.09007 * 109.46537 * 60.00533 * 9 6 5 35 35 H 1.08993 * 109.47503 * 300.00327 * 9 6 5 36 36 H 1.08994 * 109.47054 * 60.00378 * 10 9 6 37 37 H 1.09003 * 109.47025 * 300.00259 * 10 9 6 38 38 H 0.97008 * 119.99921 * 179.97438 * 14 13 11 39 39 H 1.07999 * 120.00168 * 359.97438 * 22 21 19 40 40 H 1.08007 * 119.99731 * 180.20062 * 23 22 21 41 41 H 1.08001 * 119.99708 * 179.78662 * 24 23 22 42 42 H 1.08004 * 119.99705 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.00181 * 359.97438 * 26 21 19 44 44 H 1.08999 * 109.58703 * 187.92317 * 27 19 5 45 45 H 1.09003 * 109.41019 * 67.83687 * 27 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 1.2502 5 7 3.5012 -0.8746 1.1348 6 16 4.5056 -0.4155 2.3688 7 8 3.6940 0.4106 3.1924 8 8 5.6524 0.1064 1.7116 9 6 4.9106 -1.9638 3.2227 10 6 5.8445 -1.6688 4.3982 11 6 6.1814 -2.9552 5.1072 12 1 5.7709 -3.8898 4.7544 13 6 7.0146 -2.9393 6.2056 14 7 7.5157 -1.8013 6.6343 15 14 7.4328 -4.5339 7.0840 16 1 6.7482 -5.6653 6.4085 17 1 8.9015 -4.7501 7.0447 18 1 6.9818 -4.4539 8.4965 19 6 4.0420 -1.4388 -0.1119 20 1 3.7813 -2.4949 -0.1804 21 6 5.5409 -1.2831 -0.1313 22 6 6.1099 -0.1348 -0.6494 23 6 7.4846 0.0098 -0.6636 24 6 8.2906 -0.9977 -0.1675 25 6 7.7218 -2.1482 0.3463 26 6 6.3469 -2.2910 0.3639 27 6 3.4324 -0.6845 -1.2937 28 8 2.0085 -0.6762 -1.1650 29 1 -0.3634 0.5123 0.8908 30 1 -0.3633 0.5153 -0.8892 31 1 -0.3633 -1.0277 -0.0018 32 1 1.5764 -1.7076 1.3213 33 1 1.8021 -0.1397 2.1382 34 1 5.4040 -2.6435 2.5278 35 1 3.9951 -2.4246 3.5933 36 1 5.3507 -0.9893 5.0928 37 1 6.7602 -1.2077 4.0279 38 1 8.1016 -1.7900 7.4073 39 1 5.4803 0.6507 -1.0407 40 1 7.9290 0.9084 -1.0654 41 1 9.3647 -0.8863 -0.1817 42 1 8.3516 -2.9355 0.7335 43 1 5.9025 -3.1899 0.7652 44 1 3.7110 -1.1776 -2.2249 45 1 3.8033 0.3405 -1.2993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174093327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:03 Heat of formation + Delta-G solvation = -97.780092 kcal Electronic energy + Delta-G solvation = -29208.716785 eV Core-core repulsion = 25318.027056 eV Total energy + Delta-G solvation = -3890.689729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.15327 -39.64963 -38.01542 -36.92866 -36.06994 -35.91381 -34.35977 -33.18481 -31.71681 -31.70794 -28.66920 -27.64382 -26.90498 -24.74114 -23.64856 -23.28163 -22.46760 -21.73830 -19.84683 -19.10340 -18.39781 -17.89615 -17.57092 -17.16032 -17.10212 -16.57943 -16.29735 -16.16516 -15.86313 -15.66232 -15.47772 -15.09119 -14.80792 -14.46040 -14.13343 -14.01812 -13.82099 -13.71292 -13.32331 -13.15406 -13.13744 -13.04168 -12.95039 -12.79272 -12.73747 -12.55588 -12.31791 -12.26928 -12.11722 -11.97857 -11.78017 -11.70855 -11.44426 -11.24670 -11.02397 -10.67107 -9.81047 -9.62116 -9.36134 -8.27411 -6.41381 -0.71473 0.44477 0.68075 1.38937 1.39316 1.52667 1.70433 2.36233 2.70933 2.83436 2.98548 3.06013 3.20807 3.43171 3.66214 3.82786 3.92193 4.02868 4.04242 4.07869 4.20197 4.24915 4.30666 4.35252 4.38334 4.60681 4.63440 4.67617 4.72255 4.76037 4.86881 4.93381 4.96729 5.10762 5.18296 5.23432 5.24878 5.27049 5.33572 5.49591 5.65013 5.66385 5.68333 5.75802 6.04954 6.15251 6.26504 6.71687 7.28818 8.85038 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.004483 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.833339 B = 6244.722922 C = 7562.257098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 H 0.057 0.943 4 C 0.078 3.922 5 N -0.995 5.995 6 S 2.601 3.399 7 O -1.003 7.003 8 O -0.954 6.954 9 C -0.594 4.594 10 C 0.033 3.967 11 C -0.535 4.535 12 H 0.073 0.927 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.971 3.029 16 H -0.256 1.256 17 H -0.277 1.277 18 H -0.278 1.278 19 C 0.165 3.835 20 H 0.108 0.892 21 C -0.115 4.115 22 C -0.060 4.060 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.133 4.133 26 C -0.129 4.129 27 C 0.058 3.942 28 O -0.379 6.379 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.130 0.870 36 H -0.002 1.002 37 H 0.005 0.995 38 H 0.267 0.733 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 0.235 -19.145 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.015 3.985 3 H 0.075 0.925 4 C -0.047 4.047 5 N -0.834 5.834 6 S 2.702 3.298 7 O -0.993 6.993 8 O -0.944 6.944 9 C -0.726 4.726 10 C -0.006 4.006 11 C -0.574 4.574 12 H 0.091 0.909 13 C -0.199 4.199 14 N -0.573 5.573 15 Si 0.795 3.205 16 H -0.180 1.180 17 H -0.202 1.202 18 H -0.204 1.204 19 C 0.060 3.940 20 H 0.126 0.874 21 C -0.117 4.117 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.151 4.151 26 C -0.147 4.147 27 C -0.020 4.020 28 O -0.297 6.297 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.016 0.984 37 H 0.024 0.976 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.287 1.134 -18.953 21.137 hybrid contribution 0.832 -0.913 1.418 1.881 sum -8.455 0.222 -17.535 19.468 Atomic orbital electron populations 1.21757 0.90204 1.04009 1.03781 1.22525 0.96908 0.94768 0.84281 0.92521 1.22474 0.78336 1.03345 1.00543 1.57906 1.16950 1.80386 1.28121 1.05196 0.73728 0.77402 0.73522 1.93453 1.69570 1.66189 1.70093 1.93700 1.51306 1.77929 1.71435 1.30528 1.09815 1.21187 1.11021 1.18683 0.92796 0.97999 0.91105 1.21489 1.29278 0.93658 1.12939 0.90899 1.26075 0.95538 1.00312 0.98002 1.70115 1.33322 1.27878 1.26032 0.85308 0.78180 0.78896 0.78163 1.17958 1.20219 1.20360 1.20551 0.89066 0.99964 0.84454 0.87417 1.19711 0.93624 0.96136 1.02235 1.20950 0.95301 0.95560 0.96085 1.21267 0.93910 0.99050 1.00152 1.21379 1.00556 0.93953 0.97810 1.21253 0.95223 0.98812 0.99788 1.21207 0.94464 0.99101 0.99977 1.23076 0.80563 1.00550 0.97801 1.87938 1.20939 1.77571 1.43295 0.89566 0.90775 0.90803 0.88561 0.88399 0.84368 0.85176 0.98400 0.97629 0.92417 0.85331 0.84711 0.85024 0.85627 0.85145 0.85135 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.57 71.98 0.69 -1.29 16 2 C 0.07 1.48 3.40 30.70 0.10 1.58 16 3 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 4 C 0.08 1.78 5.99 86.36 0.52 2.30 16 5 N -0.99 -26.98 3.27 -493.98 -1.62 -28.60 16 6 S 2.60 96.63 4.94 -56.49 -0.28 96.35 16 7 O -1.00 -43.34 16.39 -127.65 -2.09 -45.44 16 8 O -0.95 -37.93 12.47 -127.65 -1.59 -39.52 16 9 C -0.59 -23.70 5.99 71.98 0.43 -23.27 16 10 C 0.03 1.76 4.98 29.85 0.15 1.91 16 11 C -0.53 -29.90 9.11 25.60 0.23 -29.67 16 12 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 13 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 14 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 15 Si 0.97 43.40 29.54 68.60 2.03 45.42 16 16 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 C 0.16 3.76 3.33 44.08 0.15 3.91 16 20 H 0.11 2.08 8.09 -2.39 -0.02 2.06 16 21 C -0.12 -3.07 2.82 -19.87 -0.06 -3.13 16 22 C -0.06 -1.61 6.92 22.27 0.15 -1.45 16 23 C -0.13 -3.38 9.93 22.27 0.22 -3.16 16 24 C -0.12 -3.33 10.05 22.27 0.22 -3.10 16 25 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 26 C -0.13 -3.67 7.47 22.27 0.17 -3.50 16 27 C 0.06 1.11 5.83 71.94 0.42 1.53 16 28 O -0.38 -7.76 10.39 -148.98 -1.55 -9.31 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 2.44 6.68 -2.39 -0.02 2.43 16 34 H 0.14 4.94 5.30 -2.39 -0.01 4.93 16 35 H 0.13 4.69 8.14 -2.39 -0.02 4.67 16 36 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 39 H 0.13 2.95 6.01 -2.91 -0.02 2.93 16 40 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 41 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 42 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 43 H 0.13 3.31 6.97 -2.91 -0.02 3.29 16 44 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.06 1.17 6.06 -2.39 -0.01 1.16 16 Total: -1.00 -74.64 365.09 0.25 -74.38 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.98 Total: 24.14 kcal Atomic # 6 Polarization: -64.71 SS G_CDS: 4.08 Total: -60.62 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -1.33 Total: -85.41 kcal Atomic # 8 Polarization: -89.04 SS G_CDS: -5.23 Total: -94.27 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 96.63 SS G_CDS: -0.28 Total: 96.35 kcal Total: -74.64 0.25 -74.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174093327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.396 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds