Wall clock time and date at job start Tue Mar 31 2020 22:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47343 * 2 1 4 4 H 1.08998 * 109.47091 * 55.00149 * 3 2 1 5 5 O 1.42900 * 109.47098 * 295.00071 * 3 2 1 6 6 C 1.35949 * 117.00064 * 97.75358 * 5 3 2 7 7 C 1.38664 * 120.06475 * 354.18220 * 6 5 3 8 8 C 1.38180 * 119.96930 * 179.72385 * 7 6 5 9 9 C 1.38258 * 120.09612 * 0.55159 * 8 7 6 10 10 C 1.38257 * 120.12638 * 359.72764 * 9 8 7 11 11 C 1.38334 * 120.03062 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04946 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47086 * 174.99931 * 3 2 1 14 14 O 1.21292 * 120.00073 * 115.00349 * 13 3 2 15 15 N 1.34780 * 119.99997 * 294.99785 * 13 3 2 16 16 C 1.37097 * 119.99748 * 0.02562 * 15 13 3 17 17 H 1.07994 * 120.00228 * 323.35754 * 16 15 13 18 18 C 1.38956 * 119.99589 * 143.36536 * 16 15 13 19 19 N 1.31407 * 120.00302 * 339.08811 * 18 16 15 20 20 Si 1.86807 * 119.99739 * 159.08765 * 18 16 15 21 21 H 1.48496 * 109.47070 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47034 * 119.99798 * 20 18 16 23 23 H 1.48495 * 109.46911 * 239.99667 * 20 18 16 24 24 C 1.46501 * 120.00056 * 180.02562 * 15 13 3 25 25 C 1.50694 * 109.47076 * 84.78852 * 24 15 13 26 26 O 1.20827 * 120.00040 * 0.02562 * 25 24 15 27 27 O 1.34232 * 119.99987 * 180.02562 * 25 24 15 28 28 C 1.45196 * 117.00247 * 180.02562 * 27 25 24 29 29 H 1.09000 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47114 * 300.00126 * 1 2 3 31 31 H 1.08999 * 109.47120 * 59.99879 * 1 2 3 32 32 H 1.08997 * 109.47114 * 239.99874 * 2 1 3 33 33 H 1.08999 * 109.47120 * 120.00121 * 2 1 3 34 34 H 1.08000 * 120.01205 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.94783 * 180.27793 * 8 7 6 36 36 H 1.08001 * 119.93521 * 179.74375 * 9 8 7 37 37 H 1.07998 * 119.98573 * 179.97438 * 10 9 8 38 38 H 0.96997 * 120.00340 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.46737 * 204.79166 * 24 15 13 40 40 H 1.08999 * 109.46685 * 324.78582 * 24 15 13 41 41 H 1.09003 * 109.47379 * 59.99673 * 28 27 25 42 42 H 1.08994 * 109.47228 * 179.97438 * 28 27 25 43 43 H 1.09004 * 109.46944 * 300.00064 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6620 2.0813 -1.2210 6 6 0.5462 2.8575 -1.1918 7 6 -0.2366 2.9058 -0.0483 8 6 -1.3671 3.6998 -0.0188 9 6 -1.7254 4.4376 -1.1318 10 6 -0.9510 4.3879 -2.2760 11 6 0.1853 3.5996 -2.3093 12 9 0.9426 3.5512 -3.4269 13 6 3.5419 1.4442 0.1239 14 8 4.2252 1.8610 -0.7876 15 7 4.1260 0.9827 1.2474 16 6 3.3538 0.5111 2.2774 17 1 2.4111 0.9856 2.5066 18 6 3.7841 -0.5772 3.0265 19 7 4.6801 -1.4019 2.5326 20 14 3.0890 -0.8680 4.7359 21 1 2.1038 0.1957 5.0571 22 1 2.4195 -2.1928 4.7792 23 1 4.1914 -0.8376 5.7303 24 6 5.5861 0.9849 1.3681 25 6 6.0482 2.3358 1.8500 26 8 5.2408 3.2072 2.0705 27 8 7.3569 2.5711 2.0342 28 6 7.7295 3.8947 2.5004 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.0394 2.3263 0.8202 35 1 -1.9741 3.7407 0.8735 36 1 -2.6118 5.0541 -1.1073 37 1 -1.2332 4.9648 -3.1443 38 1 4.9802 -2.1618 3.0554 39 1 5.8928 0.2200 2.0816 40 1 6.0312 0.7740 0.3957 41 1 7.2589 4.0861 3.4648 42 1 8.8127 3.9505 2.6077 43 1 7.3964 4.6410 1.7791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175722452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:06 Heat of formation + Delta-G solvation = -160.645128 kcal Electronic energy + Delta-G solvation = -30781.100620 eV Core-core repulsion = 26321.471683 eV Total energy + Delta-G solvation = -4459.628937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.51067 -40.32798 -39.75186 -38.50773 -37.06937 -35.75175 -34.93081 -33.17742 -31.79027 -30.59215 -29.80987 -28.99614 -27.17864 -26.08994 -24.72714 -23.19331 -22.30143 -21.36178 -20.47544 -19.36839 -18.44457 -17.72875 -17.02068 -16.70607 -16.36885 -16.09456 -15.79858 -15.70490 -15.40401 -15.01927 -14.80240 -14.54210 -14.44533 -14.35411 -13.59085 -13.42228 -13.27435 -12.88139 -12.79962 -12.65592 -12.53097 -12.09561 -11.85725 -11.79461 -11.59542 -11.49083 -11.44150 -11.33371 -11.16022 -11.02027 -10.84309 -10.54818 -10.46359 -10.28066 -10.10146 -9.79915 -9.34626 -8.83991 -8.66406 -7.93721 -7.85421 -6.66075 -4.35054 1.21181 1.38303 2.95228 3.01007 3.05280 3.11177 3.15105 3.30718 3.67992 3.73155 3.96389 4.37606 4.61552 4.72587 4.82133 4.94814 5.15311 5.27167 5.37594 5.42310 5.46367 5.48570 5.50456 5.59678 5.69706 5.75295 5.87584 5.98666 6.08144 6.10795 6.15833 6.25697 6.27549 6.41168 6.43050 6.53949 6.64335 6.78570 6.93914 6.97104 7.17976 7.51514 7.62851 8.04433 8.50935 8.79509 9.14158 9.58539 10.37107 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010795 B = 0.004408 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.177850 B = 6350.162524 C = 7721.176293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.140 4.140 3 C 0.088 3.912 4 H 0.094 0.906 5 O -0.279 6.279 6 C 0.114 3.886 7 C -0.189 4.189 8 C -0.089 4.089 9 C -0.141 4.141 10 C -0.120 4.120 11 C 0.061 3.939 12 F -0.133 7.133 13 C 0.488 3.512 14 O -0.574 6.574 15 N -0.422 5.422 16 C -0.342 4.342 17 H 0.093 0.907 18 C 0.046 3.954 19 N -0.854 5.854 20 Si 0.914 3.086 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.127 3.873 25 C 0.445 3.555 26 O -0.506 6.506 27 O -0.368 6.368 28 C 0.036 3.964 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.276 0.724 39 H 0.147 0.853 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 4.927 -0.219 8.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C 0.029 3.971 4 H 0.112 0.888 5 O -0.191 6.191 6 C 0.067 3.933 7 C -0.207 4.207 8 C -0.108 4.108 9 C -0.160 4.160 10 C -0.139 4.139 11 C 0.041 3.959 12 F -0.112 7.112 13 C 0.276 3.724 14 O -0.457 6.457 15 N -0.142 5.142 16 C -0.469 4.469 17 H 0.110 0.890 18 C -0.161 4.161 19 N -0.490 5.490 20 Si 0.739 3.261 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.202 1.202 24 C 0.002 3.998 25 C 0.287 3.713 26 O -0.392 6.392 27 O -0.285 6.285 28 C -0.058 4.058 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.086 0.914 39 H 0.164 0.836 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.824 5.190 -0.751 8.606 hybrid contribution -0.142 0.063 1.086 1.097 sum -6.966 5.253 0.335 8.731 Atomic orbital electron populations 1.21956 0.96061 1.01762 1.01199 1.22045 0.95397 0.94374 1.05965 1.22224 0.94664 0.94906 0.85281 0.88806 1.86251 1.39011 1.58850 1.35001 1.19183 0.88393 0.92019 0.93731 1.21472 0.97120 1.03812 0.98307 1.20980 0.96003 0.95310 0.98469 1.20828 1.00655 1.01687 0.92798 1.20944 0.93633 0.99209 1.00067 1.17034 0.93713 1.02168 0.83007 1.91498 1.75003 1.95376 1.49281 1.19980 0.88630 0.81417 0.82360 1.90597 1.64712 1.50669 1.39703 1.42861 1.03133 1.54947 1.13307 1.19423 1.05499 1.12175 1.09774 0.88952 1.25385 0.97022 0.93827 0.99882 1.69868 1.30466 1.12202 1.36461 0.86073 0.79333 0.78624 0.82052 1.18930 1.20274 1.20226 1.20983 0.83814 0.90548 1.04464 1.25313 0.79748 0.92320 0.73945 1.90575 1.54547 1.46746 1.47321 1.86544 1.28369 1.35024 1.78533 1.23097 1.00550 0.82630 0.99518 0.92415 0.92631 0.93135 0.91307 0.86072 0.83636 0.85286 0.85275 0.84504 0.91392 0.83599 0.88116 0.92481 0.88853 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.43 37.16 0.31 -1.95 16 2 C -0.14 -2.59 5.47 -26.73 -0.15 -2.74 16 3 C 0.09 1.83 1.79 -27.88 -0.05 1.78 16 4 H 0.09 1.83 4.79 -51.93 -0.25 1.58 16 5 O -0.28 -5.96 9.01 -39.44 -0.36 -6.32 16 6 C 0.11 2.05 5.64 -39.17 -0.22 1.83 16 7 C -0.19 -2.81 7.20 -39.45 -0.28 -3.09 16 8 C -0.09 -1.07 10.04 -39.60 -0.40 -1.46 16 9 C -0.14 -1.57 10.04 -39.57 -0.40 -1.97 16 10 C -0.12 -1.53 10.02 -39.54 -0.40 -1.93 16 11 C 0.06 1.02 7.31 -39.30 -0.29 0.73 16 12 F -0.13 -2.47 17.11 2.25 0.04 -2.43 16 13 C 0.49 12.08 6.90 -10.98 -0.08 12.01 16 14 O -0.57 -15.92 16.17 -14.31 -0.23 -16.16 16 15 N -0.42 -10.20 2.07 -116.09 -0.24 -10.44 16 16 C -0.34 -7.93 6.47 -14.93 -0.10 -8.02 16 17 H 0.09 2.06 6.90 -52.49 -0.36 1.70 16 18 C 0.05 1.04 4.93 -17.47 -0.09 0.95 16 19 N -0.85 -20.03 11.44 55.50 0.64 -19.39 16 20 Si 0.91 17.82 29.60 -169.99 -5.03 12.79 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 C 0.13 2.95 5.49 -5.20 -0.03 2.92 16 25 C 0.44 10.06 7.99 36.00 0.29 10.35 16 26 O -0.51 -12.59 16.06 -18.75 -0.30 -12.89 16 27 O -0.37 -7.10 10.57 -39.26 -0.41 -7.52 16 28 C 0.04 0.54 10.56 101.05 1.07 1.61 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.74 6.59 -51.93 -0.34 0.40 16 31 H 0.05 0.76 6.39 -51.93 -0.33 0.43 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.12 2.40 5.81 -51.93 -0.30 2.10 16 34 H 0.15 2.10 4.14 -52.49 -0.22 1.89 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.28 6.08 8.31 -40.82 -0.34 5.74 16 39 H 0.15 3.38 5.50 -51.93 -0.29 3.10 16 40 H 0.10 2.31 7.58 -51.93 -0.39 1.91 16 41 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -30.55 362.50 -6.24 -36.78 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.00 Total: 9.11 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -0.80 Total: 11.00 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.39 Total: -29.83 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.30 Total: -42.89 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.55 -6.24 -36.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175722452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.861 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds