Wall clock time and date at job start Tue Mar 31 2020 22:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47343 * 2 1 4 4 H 1.08998 * 109.47091 * 55.00149 * 3 2 1 5 5 O 1.42900 * 109.47098 * 295.00071 * 3 2 1 6 6 C 1.35949 * 117.00064 * 97.75358 * 5 3 2 7 7 C 1.38664 * 120.06475 * 354.18220 * 6 5 3 8 8 C 1.38180 * 119.96930 * 179.72385 * 7 6 5 9 9 C 1.38258 * 120.09612 * 0.55159 * 8 7 6 10 10 C 1.38257 * 120.12638 * 359.72764 * 9 8 7 11 11 C 1.38334 * 120.03062 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04946 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47086 * 174.99931 * 3 2 1 14 14 O 1.21292 * 120.00073 * 115.00349 * 13 3 2 15 15 N 1.34780 * 119.99997 * 294.99785 * 13 3 2 16 16 C 1.37097 * 119.99748 * 0.02562 * 15 13 3 17 17 H 1.07994 * 120.00228 * 323.35754 * 16 15 13 18 18 C 1.38956 * 119.99589 * 143.36536 * 16 15 13 19 19 N 1.31407 * 120.00302 * 339.08811 * 18 16 15 20 20 Si 1.86807 * 119.99739 * 159.08765 * 18 16 15 21 21 H 1.48496 * 109.47070 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47034 * 119.99798 * 20 18 16 23 23 H 1.48495 * 109.46911 * 239.99667 * 20 18 16 24 24 C 1.46501 * 120.00056 * 180.02562 * 15 13 3 25 25 C 1.50694 * 109.47076 * 84.78852 * 24 15 13 26 26 O 1.20827 * 120.00040 * 0.02562 * 25 24 15 27 27 O 1.34232 * 119.99987 * 180.02562 * 25 24 15 28 28 C 1.45196 * 117.00247 * 180.02562 * 27 25 24 29 29 H 1.09000 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47114 * 300.00126 * 1 2 3 31 31 H 1.08999 * 109.47120 * 59.99879 * 1 2 3 32 32 H 1.08997 * 109.47114 * 239.99874 * 2 1 3 33 33 H 1.08999 * 109.47120 * 120.00121 * 2 1 3 34 34 H 1.08000 * 120.01205 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.94783 * 180.27793 * 8 7 6 36 36 H 1.08001 * 119.93521 * 179.74375 * 9 8 7 37 37 H 1.07998 * 119.98573 * 179.97438 * 10 9 8 38 38 H 0.96997 * 120.00340 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.46737 * 204.79166 * 24 15 13 40 40 H 1.08999 * 109.46685 * 324.78582 * 24 15 13 41 41 H 1.09003 * 109.47379 * 59.99673 * 28 27 25 42 42 H 1.08994 * 109.47228 * 179.97438 * 28 27 25 43 43 H 1.09004 * 109.46944 * 300.00064 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6620 2.0813 -1.2210 6 6 0.5462 2.8575 -1.1918 7 6 -0.2366 2.9058 -0.0483 8 6 -1.3671 3.6998 -0.0188 9 6 -1.7254 4.4376 -1.1318 10 6 -0.9510 4.3879 -2.2760 11 6 0.1853 3.5996 -2.3093 12 9 0.9426 3.5512 -3.4269 13 6 3.5419 1.4442 0.1239 14 8 4.2252 1.8610 -0.7876 15 7 4.1260 0.9827 1.2474 16 6 3.3538 0.5111 2.2774 17 1 2.4111 0.9856 2.5066 18 6 3.7841 -0.5772 3.0265 19 7 4.6801 -1.4019 2.5326 20 14 3.0890 -0.8680 4.7359 21 1 2.1038 0.1957 5.0571 22 1 2.4195 -2.1928 4.7792 23 1 4.1914 -0.8376 5.7303 24 6 5.5861 0.9849 1.3681 25 6 6.0482 2.3358 1.8500 26 8 5.2408 3.2072 2.0705 27 8 7.3569 2.5711 2.0342 28 6 7.7295 3.8947 2.5004 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.0394 2.3263 0.8202 35 1 -1.9741 3.7407 0.8735 36 1 -2.6118 5.0541 -1.1073 37 1 -1.2332 4.9648 -3.1443 38 1 4.9802 -2.1618 3.0554 39 1 5.8928 0.2200 2.0816 40 1 6.0312 0.7740 0.3957 41 1 7.2589 4.0861 3.4648 42 1 8.8127 3.9505 2.6077 43 1 7.3964 4.6410 1.7791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175722452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:05 Heat of formation + Delta-G solvation = -177.171381 kcal Electronic energy + Delta-G solvation = -30781.817252 eV Core-core repulsion = 26321.471683 eV Total energy + Delta-G solvation = -4460.345569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.81900 -41.89396 -41.35069 -40.10510 -38.38996 -37.48762 -36.79950 -34.62429 -33.61214 -31.67560 -31.01428 -30.59861 -28.56751 -27.68691 -26.43869 -24.36864 -23.43182 -22.92870 -22.04398 -21.13932 -19.78905 -19.37100 -18.76824 -18.12748 -17.85090 -17.49871 -17.38087 -17.12866 -17.01919 -16.56378 -16.24845 -16.14744 -15.81384 -15.51596 -15.22831 -14.94816 -14.65039 -14.46004 -14.30365 -14.07300 -13.74009 -13.56967 -13.25153 -13.21688 -13.03101 -12.97354 -12.82315 -12.68626 -12.66450 -12.58362 -12.30716 -12.02291 -11.92644 -11.82626 -11.62283 -11.48916 -11.08770 -10.52044 -9.88803 -9.72749 -9.16408 -8.42342 -6.18013 0.15024 0.29008 1.19149 1.38804 1.42475 1.52762 1.62538 1.76329 2.06352 2.32835 2.63753 2.90943 2.98662 3.28077 3.69244 3.77972 3.90874 3.94733 4.01855 4.05052 4.25098 4.28044 4.28656 4.34027 4.36397 4.40603 4.57538 4.59407 4.61361 4.76760 4.86722 4.99178 5.12468 5.12691 5.20598 5.28368 5.28688 5.38852 5.44647 5.44851 5.68860 5.75564 6.22667 6.33075 6.75437 6.98324 7.28893 7.74762 8.62643 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010795 B = 0.004408 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.177850 B = 6350.162524 C = 7721.176293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.099 3.901 4 H 0.104 0.896 5 O -0.315 6.315 6 C 0.074 3.926 7 C -0.194 4.194 8 C -0.079 4.079 9 C -0.122 4.122 10 C -0.112 4.112 11 C 0.024 3.976 12 F -0.156 7.156 13 C 0.465 3.535 14 O -0.621 6.621 15 N -0.423 5.423 16 C -0.357 4.357 17 H 0.100 0.900 18 C 0.016 3.984 19 N -0.879 5.879 20 Si 0.977 3.023 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.280 1.280 24 C 0.123 3.877 25 C 0.450 3.550 26 O -0.533 6.533 27 O -0.367 6.367 28 C 0.028 3.972 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.146 0.854 35 H 0.168 0.832 36 H 0.175 0.825 37 H 0.165 0.835 38 H 0.281 0.719 39 H 0.146 0.854 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.140 0.860 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 5.952 1.840 11.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.041 3.959 4 H 0.121 0.879 5 O -0.228 6.228 6 C 0.028 3.972 7 C -0.212 4.212 8 C -0.097 4.097 9 C -0.140 4.140 10 C -0.131 4.131 11 C 0.005 3.995 12 F -0.135 7.135 13 C 0.255 3.745 14 O -0.508 6.508 15 N -0.142 5.142 16 C -0.484 4.484 17 H 0.118 0.882 18 C -0.189 4.189 19 N -0.515 5.515 20 Si 0.800 3.200 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.205 1.205 24 C -0.002 4.002 25 C 0.293 3.707 26 O -0.422 6.422 27 O -0.283 6.283 28 C -0.065 4.065 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.163 0.837 35 H 0.185 0.815 36 H 0.193 0.807 37 H 0.182 0.818 38 H 0.091 0.909 39 H 0.163 0.837 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.158 0.842 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.507 6.210 1.323 11.432 hybrid contribution 0.728 -0.167 0.451 0.872 sum -8.779 6.043 1.773 10.804 Atomic orbital electron populations 1.21881 0.92801 1.03167 1.01969 1.21928 0.98137 0.92635 1.04144 1.22066 0.91779 0.96219 0.85859 0.87885 1.86179 1.41271 1.60251 1.35094 1.19593 0.88536 0.93384 0.95694 1.21596 0.97893 1.04640 0.97113 1.21476 0.94682 0.93423 1.00132 1.21398 1.00955 1.00432 0.91224 1.21358 0.91935 0.97864 1.01900 1.17632 0.95377 1.04071 0.82463 1.91428 1.75951 1.95725 1.50354 1.20855 0.90620 0.81180 0.81882 1.90535 1.66123 1.52949 1.41145 1.43081 1.03557 1.54222 1.13375 1.19703 1.06058 1.12872 1.09733 0.88207 1.26114 0.97086 0.93123 1.02567 1.69932 1.31239 1.12592 1.37702 0.85118 0.78645 0.78807 0.77460 1.18206 1.19510 1.20520 1.20958 0.83940 0.91346 1.04004 1.25022 0.80679 0.91626 0.73402 1.90548 1.55539 1.47411 1.48717 1.86506 1.26105 1.37549 1.78121 1.23535 1.03403 0.80205 0.99363 0.90618 0.90696 0.93441 0.93369 0.87416 0.83650 0.81457 0.80714 0.81783 0.90891 0.83671 0.88986 0.92031 0.84250 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.43 71.98 0.61 -3.47 16 2 C -0.13 -5.01 5.47 30.59 0.17 -4.84 16 3 C 0.10 4.33 1.79 29.85 0.05 4.38 16 4 H 0.10 4.15 4.79 -2.39 -0.01 4.14 16 5 O -0.31 -14.26 9.01 -73.99 -0.67 -14.93 16 6 C 0.07 2.71 5.64 22.53 0.13 2.84 16 7 C -0.19 -5.51 7.20 22.36 0.16 -5.35 16 8 C -0.08 -1.57 10.04 22.26 0.22 -1.35 16 9 C -0.12 -2.16 10.04 22.28 0.22 -1.93 16 10 C -0.11 -2.60 10.02 22.30 0.22 -2.38 16 11 C 0.02 0.82 7.31 22.45 0.16 0.99 16 12 F -0.16 -6.10 17.11 44.97 0.77 -5.34 16 13 C 0.46 24.40 6.90 87.66 0.60 25.00 16 14 O -0.62 -36.97 16.17 15.92 0.26 -36.71 16 15 N -0.42 -21.35 2.07 -639.60 -1.32 -22.67 16 16 C -0.36 -16.83 6.47 84.04 0.54 -16.29 16 17 H 0.10 4.46 6.90 -2.91 -0.02 4.44 16 18 C 0.02 0.73 4.93 84.93 0.42 1.15 16 19 N -0.88 -41.64 11.44 21.66 0.25 -41.40 16 20 Si 0.98 35.66 29.60 68.60 2.03 37.69 16 21 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 22 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 23 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 24 C 0.12 5.96 5.49 85.63 0.47 6.43 16 25 C 0.45 20.92 7.99 71.23 0.57 21.49 16 26 O -0.53 -27.26 16.06 21.96 0.35 -26.91 16 27 O -0.37 -14.18 10.57 -51.44 -0.54 -14.72 16 28 C 0.03 0.80 10.56 113.37 1.20 2.00 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.85 6.59 -2.39 -0.02 1.84 16 31 H 0.05 1.41 6.39 -2.39 -0.02 1.39 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.11 4.39 5.81 -2.39 -0.01 4.38 16 34 H 0.15 4.02 4.14 -2.91 -0.01 4.01 16 35 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 38 H 0.28 12.39 8.31 -92.71 -0.77 11.62 16 39 H 0.15 6.99 5.50 -2.38 -0.01 6.98 16 40 H 0.09 4.53 7.58 -2.39 -0.02 4.51 16 41 H 0.06 1.72 8.13 -2.39 -0.02 1.70 16 42 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.05 1.58 8.13 -2.38 -0.02 1.56 16 Total: -1.00 -71.59 362.50 7.94 -63.65 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 1.06 Total: 32.66 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 5.75 Total: 28.68 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -1.08 Total: -64.07 kcal Atomic # 8 Polarization: -92.68 SS G_CDS: -0.60 Total: -93.27 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.77 Total: -5.34 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -71.59 7.94 -63.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175722452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.520 kcal (2) G-P(sol) polarization free energy of solvation -71.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds