Wall clock time and date at job start Tue Mar 31 2020 22:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47172 * 2 1 4 4 H 1.08992 * 109.47845 * 305.00026 * 3 2 1 5 5 O 1.42905 * 109.46835 * 65.00271 * 3 2 1 6 6 C 1.35954 * 116.99640 * 261.56765 * 5 3 2 7 7 C 1.38656 * 120.06541 * 4.51519 * 6 5 3 8 8 C 1.38184 * 119.97278 * 179.72027 * 7 6 5 9 9 C 1.38268 * 120.08955 * 0.54997 * 8 7 6 10 10 C 1.38249 * 120.12775 * 359.72257 * 9 8 7 11 11 C 1.38333 * 120.03101 * 0.02562 * 10 9 8 12 12 F 1.35102 * 120.05087 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46897 * 184.99575 * 3 2 1 14 14 O 1.21286 * 120.00391 * 244.99887 * 13 3 2 15 15 N 1.34775 * 119.99615 * 65.00930 * 13 3 2 16 16 C 1.37099 * 120.00272 * 359.97438 * 15 13 3 17 17 H 1.07992 * 119.99890 * 15.55409 * 16 15 13 18 18 C 1.38953 * 120.00059 * 195.55139 * 16 15 13 19 19 N 1.31416 * 119.99900 * 26.38853 * 18 16 15 20 20 Si 1.86798 * 119.99929 * 206.38865 * 18 16 15 21 21 H 1.48496 * 109.47176 * 94.99107 * 20 18 16 22 22 H 1.48496 * 109.47299 * 214.99551 * 20 18 16 23 23 H 1.48503 * 109.46994 * 334.99382 * 20 18 16 24 24 C 1.46507 * 119.99676 * 179.97438 * 15 13 3 25 25 C 1.50697 * 109.47159 * 84.62399 * 24 15 13 26 26 O 1.20830 * 120.00102 * 359.97438 * 25 24 15 27 27 O 1.34224 * 120.00103 * 180.02562 * 25 24 15 28 28 C 1.45196 * 117.00496 * 179.97438 * 27 25 24 29 29 H 1.09002 * 109.47006 * 59.99580 * 1 2 3 30 30 H 1.08993 * 109.47461 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46983 * 300.00328 * 1 2 3 32 32 H 1.09003 * 109.47259 * 240.00140 * 2 1 3 33 33 H 1.09002 * 109.47006 * 120.00420 * 2 1 3 34 34 H 1.08006 * 120.01437 * 359.96724 * 7 6 5 35 35 H 1.07999 * 119.95693 * 180.27054 * 8 7 6 36 36 H 1.08000 * 119.93215 * 179.74474 * 9 8 7 37 37 H 1.07995 * 119.98776 * 179.97438 * 10 9 8 38 38 H 0.97001 * 119.99501 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.46729 * 204.61757 * 24 15 13 40 40 H 1.08995 * 109.47005 * 324.62012 * 24 15 13 41 41 H 1.08997 * 109.47404 * 179.97438 * 28 27 25 42 42 H 1.08999 * 109.47190 * 300.00355 * 28 27 25 43 43 H 1.09005 * 109.46671 * 60.00001 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8417 5 8 1.6620 2.0813 1.2211 6 6 0.5542 2.8688 1.1885 7 6 -0.2068 2.9495 0.0322 8 6 -1.3357 3.7460 0.0030 9 6 -1.7012 4.4717 1.1217 10 6 -0.9421 4.3986 2.2748 11 6 0.1860 3.5988 2.3115 12 9 0.9278 3.5267 3.4383 13 6 3.5419 1.4442 -0.1237 14 8 4.2251 1.8610 0.7876 15 7 4.1260 0.9828 -1.2473 16 6 3.3538 0.5113 -2.2774 17 1 2.2973 0.7333 -2.3057 18 6 3.9306 -0.2519 -3.2851 19 7 5.0153 -0.9521 -3.0399 20 14 3.1642 -0.2827 -4.9884 21 1 3.8357 0.7218 -5.8516 22 1 3.3292 -1.6342 -5.5811 23 1 1.7182 0.0399 -4.8864 24 6 5.5861 0.9850 -1.3678 25 6 6.1447 -0.2603 -0.7290 26 8 5.3998 -1.0667 -0.2243 27 8 7.4700 -0.4732 -0.7197 28 6 7.9372 -1.6934 -0.0865 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.0803 2.3869 -0.8439 35 1 -1.9307 3.8052 -0.8964 36 1 -2.5816 5.0966 1.0947 37 1 -1.2294 4.9667 3.1471 38 1 5.4181 -1.4847 -3.7436 39 1 5.8636 1.0084 -2.4217 40 1 5.9907 1.8638 -0.8658 41 1 9.0244 -1.7418 -0.1488 42 1 7.6323 -1.6996 0.9599 43 1 7.5057 -2.5552 -0.5958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175722475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:10 Heat of formation + Delta-G solvation = -154.307840 kcal Electronic energy + Delta-G solvation = -30908.275611 eV Core-core repulsion = 26448.921480 eV Total energy + Delta-G solvation = -4459.354132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.52810 -40.32606 -39.42301 -38.40152 -37.06837 -35.42235 -34.74228 -33.22919 -31.72202 -30.61809 -29.82177 -28.87788 -27.05896 -26.01347 -24.68373 -23.20272 -22.32873 -21.25678 -20.32715 -19.30497 -18.48669 -17.71778 -16.75736 -16.61222 -16.27235 -16.08991 -15.78923 -15.49672 -15.26757 -14.97464 -14.65223 -14.55291 -14.40985 -14.29363 -13.64849 -13.32322 -13.27040 -12.78897 -12.59192 -12.55592 -12.44238 -12.11836 -11.88043 -11.80428 -11.49211 -11.43801 -11.34708 -11.29820 -11.16801 -10.89877 -10.75104 -10.53433 -10.35473 -10.12050 -9.85304 -9.62653 -9.09756 -8.87015 -8.63809 -8.11107 -7.94506 -6.67328 -4.12892 1.18208 1.35620 2.96341 3.08151 3.12340 3.16524 3.42704 3.61412 3.65811 3.88407 3.97382 4.35342 4.58877 4.76880 4.79304 4.91758 5.11324 5.24616 5.36855 5.43129 5.49118 5.65643 5.67564 5.71660 5.76132 5.90939 5.95406 6.05540 6.07799 6.12751 6.16875 6.23780 6.31368 6.39260 6.40543 6.46365 6.51892 6.77027 6.90314 7.16160 7.33889 7.46556 7.60660 8.05414 8.81463 9.03381 9.18754 9.59848 10.39458 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.004157 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.132145 B = 6733.746544 C = 8208.374608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 C 0.087 3.913 4 H 0.094 0.906 5 O -0.277 6.277 6 C 0.114 3.886 7 C -0.190 4.190 8 C -0.089 4.089 9 C -0.142 4.142 10 C -0.119 4.119 11 C 0.061 3.939 12 F -0.133 7.133 13 C 0.469 3.531 14 O -0.579 6.579 15 N -0.422 5.422 16 C -0.351 4.351 17 H 0.107 0.893 18 C 0.045 3.955 19 N -0.852 5.852 20 Si 0.919 3.081 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.267 1.267 24 C 0.157 3.843 25 C 0.481 3.519 26 O -0.494 6.494 27 O -0.376 6.376 28 C 0.044 3.956 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.275 0.725 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 5.093 0.683 9.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C 0.029 3.971 4 H 0.111 0.889 5 O -0.189 6.189 6 C 0.067 3.933 7 C -0.208 4.208 8 C -0.107 4.107 9 C -0.160 4.160 10 C -0.138 4.138 11 C 0.041 3.959 12 F -0.111 7.111 13 C 0.257 3.743 14 O -0.463 6.463 15 N -0.142 5.142 16 C -0.477 4.477 17 H 0.124 0.876 18 C -0.163 4.163 19 N -0.488 5.488 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.192 1.192 24 C 0.032 3.968 25 C 0.322 3.678 26 O -0.378 6.378 27 O -0.294 6.294 28 C -0.051 4.051 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.342 4.817 1.407 8.893 hybrid contribution -0.198 -0.625 -0.891 1.106 sum -7.540 4.191 0.517 8.642 Atomic orbital electron populations 1.21932 0.95981 1.01801 1.01201 1.22055 0.95330 0.94524 1.06041 1.22253 0.94825 0.94743 0.85317 0.88863 1.86280 1.39578 1.58180 1.34861 1.19198 0.88612 0.91910 0.93625 1.21424 0.97420 1.03936 0.98044 1.20982 0.95858 0.95342 0.98518 1.20831 1.00766 1.01723 0.92682 1.20949 0.93749 0.99064 1.00019 1.17037 0.94122 1.02167 0.82605 1.91504 1.75814 1.95274 1.48543 1.19710 0.88563 0.83691 0.82323 1.90595 1.64560 1.52262 1.38858 1.43299 1.03495 1.53899 1.13552 1.19579 0.94480 1.33637 1.00030 0.87588 1.25193 0.96850 0.93868 1.00351 1.69948 1.21885 1.23694 1.33242 0.86037 0.79670 0.77827 0.81958 1.20033 1.20909 1.19170 1.20456 0.81855 0.92106 1.02422 1.23892 0.79300 0.88819 0.75774 1.90525 1.58977 1.45596 1.42674 1.86445 1.27148 1.42185 1.73573 1.22942 0.98788 0.86113 0.97215 0.92682 0.92411 0.93090 0.86492 0.91118 0.83718 0.85277 0.85270 0.84493 0.91484 0.86119 0.89597 0.89572 0.93086 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.47 37.16 0.31 -1.98 16 2 C -0.14 -2.71 5.28 -26.73 -0.14 -2.85 16 3 C 0.09 1.78 1.72 -27.88 -0.05 1.74 16 4 H 0.09 1.70 4.72 -51.93 -0.25 1.46 16 5 O -0.28 -5.83 9.00 -39.46 -0.36 -6.18 16 6 C 0.11 1.98 5.61 -39.18 -0.22 1.76 16 7 C -0.19 -2.68 7.31 -39.45 -0.29 -2.97 16 8 C -0.09 -1.00 10.04 -39.59 -0.40 -1.40 16 9 C -0.14 -1.50 10.04 -39.57 -0.40 -1.90 16 10 C -0.12 -1.47 10.02 -39.54 -0.40 -1.86 16 11 C 0.06 0.99 7.31 -39.30 -0.29 0.70 16 12 F -0.13 -2.42 17.11 2.25 0.04 -2.38 16 13 C 0.47 11.48 6.89 -10.99 -0.08 11.41 16 14 O -0.58 -15.98 16.18 -14.31 -0.23 -16.21 16 15 N -0.42 -10.13 2.17 -116.09 -0.25 -10.38 16 16 C -0.35 -8.05 7.41 -14.93 -0.11 -8.16 16 17 H 0.11 2.24 5.72 -52.49 -0.30 1.94 16 18 C 0.04 1.02 4.75 -17.46 -0.08 0.94 16 19 N -0.85 -20.73 9.48 55.50 0.53 -20.20 16 20 Si 0.92 17.73 29.63 -169.99 -5.04 12.70 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 C 0.16 3.65 5.15 -5.19 -0.03 3.62 16 25 C 0.48 11.70 6.15 36.00 0.22 11.92 16 26 O -0.49 -13.42 15.72 -18.75 -0.29 -13.72 16 27 O -0.38 -7.99 10.56 -39.24 -0.41 -8.41 16 28 C 0.04 0.76 10.56 101.05 1.07 1.83 16 29 H 0.05 0.73 6.72 -51.93 -0.35 0.38 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.77 6.48 -51.93 -0.34 0.44 16 32 H 0.12 2.42 5.57 -51.93 -0.29 2.13 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.15 1.97 4.29 -52.48 -0.23 1.74 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 39 H 0.12 2.72 6.49 -51.93 -0.34 2.38 16 40 H 0.09 1.89 7.59 -51.93 -0.39 1.49 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 43 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -31.51 358.62 -6.48 -37.99 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.99 Total: 8.60 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -0.87 Total: 12.79 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.27 Total: -30.58 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -1.30 Total: -44.52 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.04 Total: 12.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.51 -6.48 -37.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175722475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.321 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds