Wall clock time and date at job start Tue Mar 31 2020 22:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47116 * 2 1 4 4 N 1.46507 * 109.46882 * 119.99849 * 2 1 3 5 5 C 1.46496 * 119.99803 * 86.68439 * 4 2 1 6 6 C 1.52999 * 109.47193 * 89.99955 * 5 4 2 7 7 S 1.81405 * 109.46926 * 179.97438 * 6 5 4 8 8 C 1.81400 * 101.91908 * 179.97438 * 7 6 5 9 9 O 1.42097 * 108.57744 * 294.48716 * 7 6 5 10 10 O 1.42099 * 108.57716 * 65.51253 * 7 6 5 11 11 C 1.34774 * 119.99737 * 266.67706 * 4 2 1 12 12 O 1.21543 * 120.00072 * 222.33220 * 11 4 2 13 13 C 1.47893 * 119.99977 * 42.33974 * 11 4 2 14 14 C 1.39916 * 120.02488 * 336.57372 * 13 11 4 15 15 C 1.38327 * 120.36062 * 179.74165 * 14 13 11 16 16 C 1.37753 * 120.40786 * 0.55857 * 15 14 13 17 17 C 1.40746 * 120.04110 * 359.69796 * 16 15 14 18 18 C 1.41440 * 120.18102 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00253 * 145.84201 * 18 17 16 20 20 C 1.39938 * 119.99719 * 325.84227 * 18 17 16 21 21 N 1.30825 * 120.00246 * 174.61955 * 20 18 17 22 22 Si 1.86804 * 119.99868 * 354.61867 * 20 18 17 23 23 H 1.48500 * 109.47096 * 90.43815 * 22 20 18 24 24 H 1.48500 * 109.47159 * 210.43738 * 22 20 18 25 25 H 1.48504 * 109.47005 * 330.43368 * 22 20 18 26 26 C 1.38987 * 120.02378 * 156.84625 * 13 11 4 27 27 H 1.08997 * 109.47266 * 301.19009 * 1 2 3 28 28 H 1.08997 * 109.47205 * 61.18932 * 1 2 3 29 29 H 1.08999 * 109.46961 * 181.18995 * 1 2 3 30 30 H 1.08998 * 109.47317 * 239.99771 * 2 1 3 31 31 H 1.09002 * 109.47112 * 220.83787 * 3 2 1 32 32 H 1.08996 * 109.47078 * 340.83498 * 3 2 1 33 33 H 1.08998 * 109.46946 * 100.83566 * 3 2 1 34 34 H 1.08997 * 109.47308 * 329.99572 * 5 4 2 35 35 H 1.09000 * 109.46592 * 209.99982 * 5 4 2 36 36 H 1.09000 * 109.47373 * 299.99548 * 6 5 4 37 37 H 1.08997 * 109.47307 * 59.99616 * 6 5 4 38 38 H 1.09002 * 109.47431 * 60.00460 * 8 7 6 39 39 H 1.09001 * 109.46872 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.47319 * 300.00016 * 8 7 6 41 41 H 1.08004 * 119.81839 * 359.97438 * 14 13 11 42 42 H 1.07995 * 119.79972 * 180.27699 * 15 14 13 43 43 H 1.07999 * 119.98218 * 179.71995 * 16 15 14 44 44 H 0.96995 * 120.00024 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.20677 * 359.95795 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1932 -2.1450 1.1822 6 6 3.6119 -2.4836 0.7199 7 16 3.8287 -4.2846 0.7033 8 6 5.5437 -4.4503 0.1361 9 8 3.7446 -4.7631 2.0387 10 8 2.9699 -4.8348 -0.2862 11 6 2.3067 0.0122 2.3095 12 8 3.3072 -0.2464 2.9493 13 6 1.4055 1.0979 2.7528 14 6 0.5636 1.7292 1.8307 15 6 -0.2859 2.7418 2.2387 16 6 -0.3046 3.1482 3.5548 17 6 0.5390 2.5285 4.4957 18 6 0.5217 2.9431 5.8478 19 1 0.6826 2.2222 6.6358 20 6 0.2963 4.2874 6.1647 21 7 0.1754 4.6535 7.4148 22 14 0.1679 5.5592 4.8024 23 1 -1.2493 5.6887 4.3781 24 1 0.6571 6.8696 5.3010 25 1 0.9939 5.1301 3.6453 26 6 1.3985 1.4956 4.0845 27 1 -0.3633 0.5322 0.8791 28 1 -0.3633 0.4952 -0.9004 29 1 -0.3633 -1.0274 0.0213 30 1 1.8934 -0.5138 -0.8899 31 1 2.8942 1.5259 -0.6720 32 1 1.2460 2.1086 -0.3374 33 1 2.3433 1.7206 1.0093 34 1 1.4718 -2.5912 0.4977 35 1 2.0341 -2.5397 2.1857 36 1 3.7710 -2.0890 -0.2836 37 1 4.3333 -2.0375 1.4044 38 1 6.2087 -3.9460 0.8372 39 1 5.8077 -5.5064 0.0811 40 1 5.6454 -3.9982 -0.8505 41 1 0.5743 1.4216 0.7954 42 1 -0.9351 3.2198 1.5202 43 1 -0.9674 3.9425 3.8649 44 1 0.0195 5.5853 7.6344 45 1 2.0493 1.0137 4.7990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179222697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:37 Heat of formation + Delta-G solvation = 3.209755 kcal Electronic energy + Delta-G solvation = -28027.197289 eV Core-core repulsion = 24140.886808 eV Total energy + Delta-G solvation = -3886.310480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.87358 -37.61178 -37.20376 -36.86628 -36.25937 -34.40169 -33.22815 -30.69163 -30.42486 -30.00795 -29.55629 -27.32302 -25.47767 -24.26946 -22.76355 -21.99758 -20.68338 -19.11270 -18.83425 -17.44850 -17.26499 -16.67599 -16.46908 -16.32932 -15.94877 -15.78226 -15.18274 -14.92154 -14.24149 -13.90231 -13.76675 -13.61036 -13.58509 -13.52694 -13.26914 -12.90524 -12.78937 -12.72938 -12.31898 -12.28015 -12.21247 -12.05902 -11.89973 -11.65305 -11.52832 -11.33262 -11.25141 -11.17714 -10.89391 -10.68945 -10.55218 -10.17717 -9.84337 -9.54811 -9.31151 -9.09376 -8.48708 -7.89318 -7.62939 -6.93514 -4.56168 -0.29995 1.74319 2.46018 2.47527 3.01426 3.03349 3.15100 3.19254 3.26389 3.43073 3.74873 3.91920 4.37016 4.41035 4.44603 4.45900 4.64197 4.76643 4.96882 5.04079 5.09564 5.14257 5.24833 5.29155 5.40530 5.56823 5.64812 5.75834 5.77239 5.85152 5.88151 6.12200 6.27200 6.33685 6.41531 6.58463 6.64542 6.78402 6.96320 7.18333 7.32139 7.41508 7.54667 7.71443 7.89904 8.27815 8.35697 8.49383 8.71265 10.09181 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.002933 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.518018 B = 9543.090855 C =10326.502532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.147 3.853 3 C -0.183 4.183 4 N -0.639 5.639 5 C 0.144 3.856 6 C -0.632 4.632 7 S 2.422 3.578 8 C -0.655 4.655 9 O -0.935 6.935 10 O -0.943 6.943 11 C 0.586 3.414 12 O -0.517 6.517 13 C -0.123 4.123 14 C -0.266 4.266 15 C -0.096 4.096 16 C -0.213 4.213 17 C 0.079 3.921 18 C -0.444 4.444 19 H 0.092 0.908 20 C 0.079 3.921 21 N -0.817 5.817 22 Si 0.914 3.086 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.241 1.241 26 C -0.131 4.131 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.180 0.820 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.285 0.715 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 -10.144 -18.096 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C 0.043 3.957 3 C -0.239 4.239 4 N -0.376 5.376 5 C 0.019 3.981 6 C -0.762 4.762 7 S 2.603 3.397 8 C -0.805 4.805 9 O -0.932 6.932 10 O -0.940 6.940 11 C 0.378 3.622 12 O -0.392 6.392 13 C -0.127 4.127 14 C -0.283 4.283 15 C -0.114 4.114 16 C -0.233 4.233 17 C 0.076 3.924 18 C -0.473 4.473 19 H 0.110 0.890 20 C -0.138 4.138 21 N -0.442 5.442 22 Si 0.742 3.258 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.165 1.165 26 C -0.152 4.152 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.196 0.804 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.454 -10.771 -17.249 21.054 hybrid contribution 0.516 1.345 -0.662 1.585 sum 5.970 -9.426 -17.911 21.102 Atomic orbital electron populations 1.23409 0.95446 1.03581 1.05568 1.21061 0.94316 0.93394 0.86885 1.23002 1.01050 0.94981 1.04915 1.47514 1.71281 1.05626 1.13185 1.20931 0.91435 0.82645 1.03099 1.30904 1.08740 1.25030 1.11562 1.07796 0.78007 0.78249 0.75631 1.30258 1.25472 1.11761 1.12982 1.93626 1.85739 1.78098 1.35778 1.93593 1.62925 1.75981 1.61483 1.18783 0.83551 0.81371 0.78449 1.90671 1.24741 1.67357 1.56410 1.19626 0.99423 0.98154 0.95467 1.23084 1.01010 1.01807 1.02438 1.20570 0.98332 0.97254 0.95268 1.21227 1.02770 1.04803 0.94474 1.17708 0.89701 0.91509 0.93471 1.19503 1.41326 0.94744 0.91768 0.88960 1.26120 0.91175 0.99875 0.96642 1.69610 1.35691 1.19706 1.19183 0.86320 0.79621 0.78026 0.81878 1.19750 1.22102 1.16484 1.21330 0.99606 1.00641 0.93578 0.86201 0.91647 0.92432 0.90095 0.93314 0.90219 0.88810 0.89027 0.89271 0.85005 0.83765 0.85212 0.85353 0.85445 0.80401 0.88297 0.88125 0.90412 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.43 8.58 37.16 0.32 -2.11 16 2 C 0.15 1.67 3.13 -67.93 -0.21 1.46 16 3 C -0.18 -2.23 7.90 37.16 0.29 -1.94 16 4 N -0.64 -8.94 2.43 -167.20 -0.41 -9.35 16 5 C 0.14 1.69 5.44 -4.04 -0.02 1.67 16 6 C -0.63 -5.51 6.08 37.16 0.23 -5.29 16 7 S 2.42 20.15 5.36 -107.50 -0.58 19.57 16 8 C -0.66 -3.11 10.62 101.05 1.07 -2.04 16 9 O -0.94 -11.98 18.10 -57.83 -1.05 -13.03 16 10 O -0.94 -10.52 18.10 -57.83 -1.05 -11.57 16 11 C 0.59 10.75 5.64 -12.31 -0.07 10.68 16 12 O -0.52 -10.76 16.43 5.33 0.09 -10.67 16 13 C -0.12 -2.48 5.10 -105.04 -0.54 -3.02 16 14 C -0.27 -4.70 4.58 -38.92 -0.18 -4.88 16 15 C -0.10 -1.84 10.01 -39.73 -0.40 -2.24 16 16 C -0.21 -4.81 6.81 -38.81 -0.26 -5.07 16 17 C 0.08 1.94 5.14 -106.87 -0.55 1.39 16 18 C -0.44 -11.90 9.62 -37.73 -0.36 -12.26 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 20 C 0.08 2.06 5.51 -17.34 -0.10 1.97 16 21 N -0.82 -21.81 13.93 55.55 0.77 -21.04 16 22 Si 0.91 20.35 24.37 -169.99 -4.14 16.20 16 23 H -0.27 -5.79 6.73 56.52 0.38 -5.41 16 24 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.24 -5.42 6.42 56.52 0.36 -5.06 16 26 C -0.13 -3.06 9.33 -38.44 -0.36 -3.42 16 27 H 0.12 1.61 4.13 -53.19 -0.22 1.39 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.88 6.71 -51.93 -0.35 0.53 16 33 H 0.09 1.48 3.93 -51.93 -0.20 1.28 16 34 H 0.09 0.85 8.07 -51.93 -0.42 0.44 16 35 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 36 H 0.13 0.78 8.14 -51.92 -0.42 0.35 16 37 H 0.14 1.39 7.56 -51.93 -0.39 0.99 16 38 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.18 2.52 0.67 -97.47 -0.07 2.45 16 42 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.10 2.27 4.27 -52.49 -0.22 2.04 16 44 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 45 H 0.11 2.67 7.81 -52.49 -0.41 2.26 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -34.62 363.14 -8.14 -42.76 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.12 Total: 6.75 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -1.14 Total: -25.09 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.37 Total: -30.39 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -2.01 Total: -35.28 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.14 Total: 16.20 kcal Atomic # 16 Polarization: 20.15 SS G_CDS: -0.58 Total: 19.57 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.62 -8.14 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179222697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.968 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds