Wall clock time and date at job start Tue Mar 31 2020 22:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47116 * 2 1 4 4 N 1.46507 * 109.46882 * 119.99849 * 2 1 3 5 5 C 1.46496 * 119.99803 * 86.68439 * 4 2 1 6 6 C 1.52999 * 109.47193 * 89.99955 * 5 4 2 7 7 S 1.81405 * 109.46926 * 179.97438 * 6 5 4 8 8 C 1.81400 * 101.91908 * 179.97438 * 7 6 5 9 9 O 1.42097 * 108.57744 * 294.48716 * 7 6 5 10 10 O 1.42099 * 108.57716 * 65.51253 * 7 6 5 11 11 C 1.34774 * 119.99737 * 266.67706 * 4 2 1 12 12 O 1.21543 * 120.00072 * 222.33220 * 11 4 2 13 13 C 1.47893 * 119.99977 * 42.33974 * 11 4 2 14 14 C 1.39916 * 120.02488 * 336.57372 * 13 11 4 15 15 C 1.38327 * 120.36062 * 179.74165 * 14 13 11 16 16 C 1.37753 * 120.40786 * 0.55857 * 15 14 13 17 17 C 1.40746 * 120.04110 * 359.69796 * 16 15 14 18 18 C 1.41440 * 120.18102 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00253 * 145.84201 * 18 17 16 20 20 C 1.39938 * 119.99719 * 325.84227 * 18 17 16 21 21 N 1.30825 * 120.00246 * 174.61955 * 20 18 17 22 22 Si 1.86804 * 119.99868 * 354.61867 * 20 18 17 23 23 H 1.48500 * 109.47096 * 90.43815 * 22 20 18 24 24 H 1.48500 * 109.47159 * 210.43738 * 22 20 18 25 25 H 1.48504 * 109.47005 * 330.43368 * 22 20 18 26 26 C 1.38987 * 120.02378 * 156.84625 * 13 11 4 27 27 H 1.08997 * 109.47266 * 301.19009 * 1 2 3 28 28 H 1.08997 * 109.47205 * 61.18932 * 1 2 3 29 29 H 1.08999 * 109.46961 * 181.18995 * 1 2 3 30 30 H 1.08998 * 109.47317 * 239.99771 * 2 1 3 31 31 H 1.09002 * 109.47112 * 220.83787 * 3 2 1 32 32 H 1.08996 * 109.47078 * 340.83498 * 3 2 1 33 33 H 1.08998 * 109.46946 * 100.83566 * 3 2 1 34 34 H 1.08997 * 109.47308 * 329.99572 * 5 4 2 35 35 H 1.09000 * 109.46592 * 209.99982 * 5 4 2 36 36 H 1.09000 * 109.47373 * 299.99548 * 6 5 4 37 37 H 1.08997 * 109.47307 * 59.99616 * 6 5 4 38 38 H 1.09002 * 109.47431 * 60.00460 * 8 7 6 39 39 H 1.09001 * 109.46872 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.47319 * 300.00016 * 8 7 6 41 41 H 1.08004 * 119.81839 * 359.97438 * 14 13 11 42 42 H 1.07995 * 119.79972 * 180.27699 * 15 14 13 43 43 H 1.07999 * 119.98218 * 179.71995 * 16 15 14 44 44 H 0.96995 * 120.00024 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.20677 * 359.95795 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1932 -2.1450 1.1822 6 6 3.6119 -2.4836 0.7199 7 16 3.8287 -4.2846 0.7033 8 6 5.5437 -4.4503 0.1361 9 8 3.7446 -4.7631 2.0387 10 8 2.9699 -4.8348 -0.2862 11 6 2.3067 0.0122 2.3095 12 8 3.3072 -0.2464 2.9493 13 6 1.4055 1.0979 2.7528 14 6 0.5636 1.7292 1.8307 15 6 -0.2859 2.7418 2.2387 16 6 -0.3046 3.1482 3.5548 17 6 0.5390 2.5285 4.4957 18 6 0.5217 2.9431 5.8478 19 1 0.6826 2.2222 6.6358 20 6 0.2963 4.2874 6.1647 21 7 0.1754 4.6535 7.4148 22 14 0.1679 5.5592 4.8024 23 1 -1.2493 5.6887 4.3781 24 1 0.6571 6.8696 5.3010 25 1 0.9939 5.1301 3.6453 26 6 1.3985 1.4956 4.0845 27 1 -0.3633 0.5322 0.8791 28 1 -0.3633 0.4952 -0.9004 29 1 -0.3633 -1.0274 0.0213 30 1 1.8934 -0.5138 -0.8899 31 1 2.8942 1.5259 -0.6720 32 1 1.2460 2.1086 -0.3374 33 1 2.3433 1.7206 1.0093 34 1 1.4718 -2.5912 0.4977 35 1 2.0341 -2.5397 2.1857 36 1 3.7710 -2.0890 -0.2836 37 1 4.3333 -2.0375 1.4044 38 1 6.2087 -3.9460 0.8372 39 1 5.8077 -5.5064 0.0811 40 1 5.6454 -3.9982 -0.8505 41 1 0.5743 1.4216 0.7954 42 1 -0.9351 3.2198 1.5202 43 1 -0.9674 3.9425 3.8649 44 1 0.0195 5.5853 7.6344 45 1 2.0493 1.0137 4.7990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179222697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:36 Heat of formation + Delta-G solvation = -23.361580 kcal Electronic energy + Delta-G solvation = -28028.349508 eV Core-core repulsion = 24140.886808 eV Total energy + Delta-G solvation = -3887.462700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19373 -39.22583 -38.19918 -37.99249 -37.05517 -35.80638 -34.73506 -32.08591 -32.05913 -31.04291 -30.27087 -28.27583 -27.20402 -25.46838 -23.93042 -23.43115 -22.31378 -20.37463 -19.80372 -18.88704 -18.40104 -17.99385 -17.45057 -17.17728 -16.97560 -16.93210 -16.69102 -16.33704 -15.53191 -15.10723 -15.08667 -14.88433 -14.63513 -14.46125 -14.45773 -14.04753 -13.91701 -13.75883 -13.61055 -13.27362 -13.14126 -13.10200 -13.02952 -12.92635 -12.83121 -12.57285 -12.37699 -12.24064 -12.09036 -12.02477 -11.78454 -11.64692 -11.58748 -11.18965 -10.84430 -10.52089 -9.72547 -9.50059 -9.33858 -8.84602 -6.55921 -0.94115 0.11343 0.75601 1.22819 1.39110 1.45681 1.63861 1.85625 1.96556 2.10648 2.62259 2.74652 3.13326 3.38345 3.52399 3.64847 3.86855 3.87303 4.08400 4.11832 4.14501 4.22290 4.27541 4.29581 4.43220 4.49204 4.60088 4.75363 4.81425 4.84810 4.89230 4.95825 4.99325 5.01010 5.08931 5.19678 5.30898 5.42304 5.51302 5.62242 5.70773 5.74356 5.84563 6.09644 6.28898 6.36231 6.64572 6.74929 6.95689 8.24859 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.002933 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.518018 B = 9543.090855 C =10326.502532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.135 3.865 3 C -0.193 4.193 4 N -0.630 5.630 5 C 0.126 3.874 6 C -0.627 4.627 7 S 2.432 3.568 8 C -0.634 4.634 9 O -0.993 6.993 10 O -0.972 6.972 11 C 0.586 3.414 12 O -0.554 6.554 13 C -0.131 4.131 14 C -0.221 4.221 15 C -0.100 4.100 16 C -0.214 4.214 17 C 0.058 3.942 18 C -0.491 4.491 19 H 0.044 0.956 20 C 0.035 3.965 21 N -0.869 5.869 22 Si 0.974 3.026 23 H -0.248 1.248 24 H -0.285 1.285 25 H -0.243 1.243 26 C -0.163 4.163 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.171 0.829 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.229 0.771 42 H 0.150 0.850 43 H 0.104 0.896 44 H 0.292 0.708 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 -10.206 -24.969 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C 0.033 3.967 3 C -0.249 4.249 4 N -0.365 5.365 5 C 0.002 3.998 6 C -0.757 4.757 7 S 2.618 3.382 8 C -0.787 4.787 9 O -0.990 6.990 10 O -0.969 6.969 11 C 0.378 3.622 12 O -0.432 6.432 13 C -0.134 4.134 14 C -0.237 4.237 15 C -0.118 4.118 16 C -0.234 4.234 17 C 0.056 3.944 18 C -0.522 4.522 19 H 0.062 0.938 20 C -0.176 4.176 21 N -0.497 5.497 22 Si 0.797 3.203 23 H -0.173 1.173 24 H -0.212 1.212 25 H -0.167 1.167 26 C -0.184 4.184 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.082 0.918 36 H 0.189 0.811 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.178 0.822 41 H 0.244 0.756 42 H 0.167 0.833 43 H 0.122 0.878 44 H 0.102 0.898 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.392 -10.865 -24.143 27.019 hybrid contribution 0.610 1.088 1.149 1.695 sum 6.002 -9.777 -22.994 25.697 Atomic orbital electron populations 1.23335 0.94766 1.04465 1.05606 1.21515 0.94887 0.93320 0.86942 1.23028 1.03053 0.95717 1.03126 1.47538 1.70235 1.06375 1.12397 1.21221 0.94452 0.81151 1.02971 1.30811 1.06284 1.25287 1.13360 1.07213 0.79572 0.77424 0.73974 1.30062 1.20548 1.13307 1.14809 1.93560 1.87389 1.79110 1.38915 1.93549 1.65459 1.76410 1.61520 1.18581 0.82975 0.81121 0.79560 1.90656 1.26162 1.68281 1.58071 1.19981 1.00060 0.98929 0.94454 1.23985 0.96968 0.98594 1.04188 1.21148 0.98799 0.97224 0.94619 1.21440 1.01917 1.04419 0.95597 1.17743 0.90923 0.92651 0.93108 1.19433 1.45571 0.95045 0.92117 0.93805 1.26926 0.90532 1.01176 0.98986 1.69673 1.38655 1.20480 1.20930 0.85425 0.80623 0.75493 0.78761 1.17285 1.21193 1.16651 1.21248 1.00348 1.01665 0.95103 0.89193 0.88021 0.91383 0.85599 0.90678 0.88084 0.92853 0.85937 0.91784 0.81113 0.84838 0.83829 0.84117 0.82246 0.75574 0.83275 0.87847 0.89779 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.51 8.58 71.98 0.62 -2.89 16 2 C 0.13 2.30 3.13 44.99 0.14 2.44 16 3 C -0.19 -3.63 7.90 71.98 0.57 -3.06 16 4 N -0.63 -15.90 2.43 -801.17 -1.95 -17.85 16 5 C 0.13 2.70 5.44 86.38 0.47 3.17 16 6 C -0.63 -9.24 6.08 71.98 0.44 -8.80 16 7 S 2.43 36.12 5.36 -56.49 -0.30 35.81 16 8 C -0.63 -3.49 10.62 113.37 1.20 -2.29 16 9 O -0.99 -25.91 18.10 -127.37 -2.31 -28.22 16 10 O -0.97 -19.56 18.10 -127.37 -2.30 -21.87 16 11 C 0.59 21.46 5.64 86.80 0.49 21.95 16 12 O -0.55 -24.04 16.43 -3.85 -0.06 -24.10 16 13 C -0.13 -5.29 5.10 -20.13 -0.10 -5.40 16 14 C -0.22 -7.13 4.58 22.70 0.10 -7.03 16 15 C -0.10 -3.47 10.01 22.18 0.22 -3.25 16 16 C -0.21 -9.53 6.81 22.77 0.16 -9.38 16 17 C 0.06 3.02 5.14 -21.32 -0.11 2.92 16 18 C -0.49 -29.01 9.62 23.47 0.23 -28.79 16 19 H 0.04 2.86 8.06 -2.91 -0.02 2.83 16 20 C 0.04 1.95 5.51 85.25 0.47 2.42 16 21 N -0.87 -50.07 13.93 21.82 0.30 -49.76 16 22 Si 0.97 42.67 24.37 68.60 1.67 44.34 16 23 H -0.25 -9.84 6.73 99.48 0.67 -9.17 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.24 -10.53 6.42 99.48 0.64 -9.89 16 26 C -0.16 -8.17 9.33 23.01 0.21 -7.96 16 27 H 0.09 1.95 4.13 -3.57 -0.01 1.93 16 28 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.13 1.20 8.10 -2.39 -0.02 1.18 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.50 6.71 -2.39 -0.02 1.48 16 33 H 0.05 1.50 3.93 -2.39 -0.01 1.49 16 34 H 0.12 1.85 8.07 -2.39 -0.02 1.83 16 35 H 0.06 1.68 8.03 -2.39 -0.02 1.66 16 36 H 0.17 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.13 2.38 7.56 -2.39 -0.02 2.36 16 38 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.23 5.20 0.67 -45.16 -0.03 5.17 16 42 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 43 H 0.10 4.52 4.27 -2.91 -0.01 4.51 16 44 H 0.29 15.08 8.30 -92.71 -0.77 14.31 16 45 H 0.08 4.48 7.81 -2.91 -0.02 4.46 16 Total: -1.00 -86.82 363.14 1.04 -85.78 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.88 Total: 21.82 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 5.11 Total: -45.96 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -1.64 Total: -67.61 kcal Atomic # 8 Polarization: -69.52 SS G_CDS: -4.67 Total: -74.19 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.67 Total: 44.34 kcal Atomic # 16 Polarization: 36.12 SS G_CDS: -0.30 Total: 35.81 kcal Total: -86.82 1.04 -85.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179222697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.421 kcal (2) G-P(sol) polarization free energy of solvation -86.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds