Wall clock time and date at job start Tue Mar 31 2020 23:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 S 1.81399 * 109.47004 * 119.99975 * 2 1 3 5 5 O 1.42106 * 110.54510 * 296.62679 * 4 2 1 6 6 O 1.42102 * 110.54329 * 73.37000 * 4 2 1 7 7 C 1.76193 * 104.45296 * 184.99829 * 4 2 1 8 8 C 1.38230 * 120.00237 * 269.73184 * 7 4 2 9 9 C 1.38236 * 120.00201 * 179.76168 * 8 7 4 10 10 C 1.38237 * 119.99848 * 0.51002 * 9 8 7 11 11 C 1.50697 * 120.00039 * 179.72319 * 10 9 8 12 12 C 1.50691 * 109.47240 * 270.01595 * 11 10 9 13 13 O 1.21281 * 120.00039 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00255 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00012 * 0.02562 * 14 12 11 16 16 C 1.46499 * 120.00085 * 180.02562 * 14 12 11 17 17 C 1.50702 * 109.46854 * 90.00240 * 16 14 12 18 18 H 1.08001 * 120.00318 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99837 * 179.97438 * 17 16 14 20 20 N 1.31520 * 120.00015 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00125 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46973 * 60.00416 * 21 19 17 23 23 H 1.48499 * 109.47053 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47148 * 300.00190 * 21 19 17 25 25 C 1.38236 * 119.99830 * 359.74000 * 10 9 8 26 26 C 1.38231 * 120.00004 * 0.02562 * 25 10 9 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.08001 * 119.99729 * 359.97438 * 8 7 4 35 35 H 1.08003 * 120.00370 * 180.22618 * 9 8 7 36 36 H 1.09003 * 109.47180 * 30.01987 * 11 10 9 37 37 H 1.09004 * 109.47201 * 150.01665 * 11 10 9 38 38 H 1.08997 * 109.47292 * 89.99626 * 15 14 12 39 39 H 1.09004 * 109.47230 * 209.99591 * 15 14 12 40 40 H 1.09001 * 109.47294 * 329.99898 * 15 14 12 41 41 H 1.09005 * 109.47135 * 209.99791 * 16 14 12 42 42 H 1.09001 * 109.47520 * 330.00313 * 16 14 12 43 43 H 0.97001 * 119.99598 * 179.97438 * 20 19 17 44 44 H 1.08006 * 119.99818 * 179.97438 * 25 10 9 45 45 H 1.08002 * 119.99961 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.7386 -0.1594 2.6553 6 8 1.9419 -2.2578 1.3607 7 6 3.8838 -0.6504 1.4239 8 6 4.6687 -1.5884 0.7798 9 6 6.0405 -1.4252 0.7307 10 6 6.6283 -0.3295 1.3347 11 6 8.1244 -0.1549 1.2865 12 6 8.7478 -0.8309 2.4803 13 8 8.0463 -1.3991 3.2903 14 7 10.0849 -0.8051 2.6474 15 6 10.9323 -0.1193 1.6687 16 6 10.6909 -1.4628 3.8077 17 6 11.0150 -2.8933 3.4617 18 1 10.7915 -3.2746 2.4762 19 6 11.5969 -3.7155 4.4032 20 7 11.8687 -3.2514 5.6035 21 14 11.9980 -5.4889 3.9747 22 1 12.9491 -5.5197 2.8347 23 1 12.6124 -6.1556 5.1508 24 1 10.7507 -6.2014 3.5980 25 6 5.8438 0.6058 1.9832 26 6 4.4716 0.4451 2.0282 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 4.2099 -2.4469 0.3121 35 1 6.6536 -2.1562 0.2243 36 1 8.5131 -0.6020 0.3716 37 1 8.3669 0.9077 1.3030 38 1 11.0583 0.9224 1.9639 39 1 11.9069 -0.6058 1.6277 40 1 10.4622 -0.1641 0.6863 41 1 11.6063 -0.9398 4.0848 42 1 9.9923 -1.4406 4.6440 43 1 12.2777 -3.8300 6.2659 44 1 6.3031 1.4617 2.4555 45 1 3.8587 1.1757 2.5352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180575227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:36 Heat of formation + Delta-G solvation = -84.211745 kcal Electronic energy + Delta-G solvation = -27012.205876 eV Core-core repulsion = 23122.104515 eV Total energy + Delta-G solvation = -3890.101361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.83830 -38.50480 -37.28669 -36.08424 -35.44951 -34.88141 -33.15378 -32.50264 -31.09864 -28.83994 -27.83688 -27.12916 -25.68256 -23.34737 -22.99635 -22.77811 -21.66295 -19.06362 -18.56678 -17.92973 -16.96188 -16.59836 -16.38196 -16.18677 -15.74432 -15.49999 -14.98291 -14.80609 -14.48868 -14.37580 -14.06260 -13.74521 -13.62402 -13.55186 -13.09899 -12.81267 -12.76675 -12.50510 -12.26506 -12.22549 -12.12001 -12.06615 -11.92268 -11.88584 -11.85623 -11.76571 -11.21901 -11.17971 -10.94249 -10.90179 -10.58648 -10.48371 -10.18215 -9.68117 -9.35281 -9.03731 -8.85368 -8.45224 -7.70725 -6.06361 -4.11510 -0.15287 0.77763 1.30397 2.69511 3.28469 3.30543 3.33193 3.35636 3.39987 3.73396 3.80371 4.00362 4.10901 4.30903 4.43223 4.61567 4.64040 4.69188 4.84862 4.99249 5.06953 5.14796 5.15475 5.21342 5.26558 5.29005 5.30238 5.45482 5.48467 5.50876 5.59439 5.60288 5.74223 5.85322 5.92746 6.01690 6.10026 6.15159 6.46094 6.80023 7.00223 7.40300 7.48098 7.89244 8.20102 8.33804 8.85997 9.02312 9.53600 11.01757 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.002484 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.840451 B =11269.233116 C =11982.670974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.571 4.571 3 C -0.144 4.144 4 S 2.495 3.505 5 O -0.935 6.935 6 O -0.939 6.939 7 C -0.664 4.664 8 C -0.022 4.022 9 C -0.125 4.125 10 C 0.004 3.996 11 C -0.115 4.115 12 C 0.505 3.495 13 O -0.531 6.531 14 N -0.602 5.602 15 C 0.082 3.918 16 C 0.246 3.754 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.127 4.127 26 C -0.022 4.022 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.139 0.861 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.044 0.956 43 H 0.264 0.736 44 H 0.131 0.869 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.316 12.909 -16.771 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.680 4.680 3 C -0.202 4.202 4 S 2.676 3.324 5 O -0.932 6.932 6 O -0.936 6.936 7 C -0.751 4.751 8 C -0.041 4.041 9 C -0.144 4.144 10 C 0.003 3.997 11 C -0.155 4.155 12 C 0.291 3.709 13 O -0.408 6.408 14 N -0.335 5.335 15 C -0.062 4.062 16 C 0.127 3.873 17 C -0.567 4.567 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.146 4.146 26 C -0.041 4.041 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.157 0.843 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.149 0.851 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.044 12.113 -15.503 26.696 hybrid contribution 1.152 -0.725 -0.790 1.574 sum -16.893 11.387 -16.294 26.087 Atomic orbital electron populations 1.21679 0.89919 1.03878 1.04922 1.30036 1.06576 1.10214 1.21219 1.21710 1.02216 0.91642 1.04656 1.05593 0.74724 0.75244 0.76845 1.93555 1.81623 1.75441 1.42610 1.93567 1.85077 1.28102 1.86838 1.30268 1.24730 1.05478 1.14664 1.20837 0.93986 0.95726 0.93581 1.21145 0.94753 0.97471 1.01021 1.19761 0.94470 0.93186 0.92269 1.20936 0.91684 1.03060 0.99859 1.20030 0.82781 0.81363 0.86742 1.90728 1.61059 1.44051 1.44988 1.48170 1.05182 1.53570 1.26577 1.21663 0.96613 0.96344 0.91591 1.19302 0.93376 0.91830 0.82834 1.21369 1.40369 0.96020 0.98920 0.92569 1.24945 0.95588 0.98780 0.94800 1.69922 1.42775 1.36532 1.04088 0.86550 0.78598 0.84476 0.77749 1.20251 1.21122 1.20140 1.21111 0.93510 1.00226 0.99771 1.20823 0.95437 0.94613 0.93202 0.89792 0.90952 0.90609 0.84287 0.90322 0.90507 0.90683 0.84346 0.85052 0.87951 0.88091 0.93656 0.90645 0.92461 0.94944 0.93829 0.92605 0.85135 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.20 37.16 0.34 -0.47 16 2 C -0.57 -3.69 3.48 -26.73 -0.09 -3.78 16 3 C -0.14 -0.79 8.90 37.16 0.33 -0.46 16 4 S 2.50 27.64 4.67 -107.50 -0.50 27.14 16 5 O -0.94 -12.76 17.12 -57.54 -0.98 -13.75 16 6 O -0.94 -13.31 17.12 -57.54 -0.98 -14.29 16 7 C -0.66 -8.17 4.87 -39.58 -0.19 -8.36 16 8 C -0.02 -0.29 9.47 -39.59 -0.37 -0.66 16 9 C -0.12 -1.70 9.70 -39.58 -0.38 -2.09 16 10 C 0.00 0.05 4.37 -104.62 -0.46 -0.41 16 11 C -0.12 -1.55 4.38 -29.04 -0.13 -1.68 16 12 C 0.51 10.14 7.67 -10.99 -0.08 10.06 16 13 O -0.53 -13.40 15.61 5.56 0.09 -13.31 16 14 N -0.60 -12.40 2.86 -182.96 -0.52 -12.93 16 15 C 0.08 1.21 10.24 59.85 0.61 1.82 16 16 C 0.25 6.40 5.16 -5.19 -0.03 6.37 16 17 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 18 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 21 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 C -0.13 -1.65 9.70 -39.58 -0.38 -2.03 16 26 C -0.02 -0.27 8.46 -39.58 -0.33 -0.60 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.14 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.40 6.58 -51.93 -0.34 0.06 16 34 H 0.14 1.50 7.56 -52.49 -0.40 1.10 16 35 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.10 1.14 7.34 -51.93 -0.38 0.76 16 37 H 0.10 1.05 8.05 -51.93 -0.42 0.63 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.16 8.07 -51.93 -0.42 0.75 16 40 H 0.06 0.65 6.44 -51.93 -0.33 0.32 16 41 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 45 H 0.14 1.39 7.57 -52.49 -0.40 0.99 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -38.96 388.33 -9.78 -48.74 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.84 Total: -2.49 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.59 Total: -15.91 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.21 Total: -38.93 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.88 Total: -41.36 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 27.64 SS G_CDS: -0.50 Total: 27.14 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.96 -9.78 -48.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180575227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.469 kcal (2) G-P(sol) polarization free energy of solvation -38.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds