Wall clock time and date at job start Tue Mar 31 2020 23:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 S 1.81399 * 109.47004 * 119.99975 * 2 1 3 5 5 O 1.42106 * 110.54510 * 296.62679 * 4 2 1 6 6 O 1.42102 * 110.54329 * 73.37000 * 4 2 1 7 7 C 1.76193 * 104.45296 * 184.99829 * 4 2 1 8 8 C 1.38230 * 120.00237 * 269.73184 * 7 4 2 9 9 C 1.38236 * 120.00201 * 179.76168 * 8 7 4 10 10 C 1.38237 * 119.99848 * 0.51002 * 9 8 7 11 11 C 1.50697 * 120.00039 * 179.72319 * 10 9 8 12 12 C 1.50691 * 109.47240 * 270.01595 * 11 10 9 13 13 O 1.21281 * 120.00039 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00255 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00012 * 0.02562 * 14 12 11 16 16 C 1.46499 * 120.00085 * 180.02562 * 14 12 11 17 17 C 1.50702 * 109.46854 * 90.00240 * 16 14 12 18 18 H 1.08001 * 120.00318 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99837 * 179.97438 * 17 16 14 20 20 N 1.31520 * 120.00015 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00125 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46973 * 60.00416 * 21 19 17 23 23 H 1.48499 * 109.47053 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47148 * 300.00190 * 21 19 17 25 25 C 1.38236 * 119.99830 * 359.74000 * 10 9 8 26 26 C 1.38231 * 120.00004 * 0.02562 * 25 10 9 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.08001 * 119.99729 * 359.97438 * 8 7 4 35 35 H 1.08003 * 120.00370 * 180.22618 * 9 8 7 36 36 H 1.09003 * 109.47180 * 30.01987 * 11 10 9 37 37 H 1.09004 * 109.47201 * 150.01665 * 11 10 9 38 38 H 1.08997 * 109.47292 * 89.99626 * 15 14 12 39 39 H 1.09004 * 109.47230 * 209.99591 * 15 14 12 40 40 H 1.09001 * 109.47294 * 329.99898 * 15 14 12 41 41 H 1.09005 * 109.47135 * 209.99791 * 16 14 12 42 42 H 1.09001 * 109.47520 * 330.00313 * 16 14 12 43 43 H 0.97001 * 119.99598 * 179.97438 * 20 19 17 44 44 H 1.08006 * 119.99818 * 179.97438 * 25 10 9 45 45 H 1.08002 * 119.99961 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.7386 -0.1594 2.6553 6 8 1.9419 -2.2578 1.3607 7 6 3.8838 -0.6504 1.4239 8 6 4.6687 -1.5884 0.7798 9 6 6.0405 -1.4252 0.7307 10 6 6.6283 -0.3295 1.3347 11 6 8.1244 -0.1549 1.2865 12 6 8.7478 -0.8309 2.4803 13 8 8.0463 -1.3991 3.2903 14 7 10.0849 -0.8051 2.6474 15 6 10.9323 -0.1193 1.6687 16 6 10.6909 -1.4628 3.8077 17 6 11.0150 -2.8933 3.4617 18 1 10.7915 -3.2746 2.4762 19 6 11.5969 -3.7155 4.4032 20 7 11.8687 -3.2514 5.6035 21 14 11.9980 -5.4889 3.9747 22 1 12.9491 -5.5197 2.8347 23 1 12.6124 -6.1556 5.1508 24 1 10.7507 -6.2014 3.5980 25 6 5.8438 0.6058 1.9832 26 6 4.4716 0.4451 2.0282 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 4.2099 -2.4469 0.3121 35 1 6.6536 -2.1562 0.2243 36 1 8.5131 -0.6020 0.3716 37 1 8.3669 0.9077 1.3030 38 1 11.0583 0.9224 1.9639 39 1 11.9069 -0.6058 1.6277 40 1 10.4622 -0.1641 0.6863 41 1 11.6063 -0.9398 4.0848 42 1 9.9923 -1.4406 4.6440 43 1 12.2777 -3.8300 6.2659 44 1 6.3031 1.4617 2.4555 45 1 3.8587 1.1757 2.5352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180575227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:35 Heat of formation + Delta-G solvation = -111.892840 kcal Electronic energy + Delta-G solvation = -27013.406218 eV Core-core repulsion = 23122.104515 eV Total energy + Delta-G solvation = -3891.301703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.08567 -39.81135 -38.23684 -37.04028 -36.60483 -35.96202 -34.81886 -34.02756 -32.05008 -30.39350 -28.78864 -28.07207 -27.20032 -25.00724 -23.93773 -23.57419 -22.81177 -20.06379 -19.93145 -18.82373 -18.71621 -17.87411 -17.73378 -17.23094 -17.10316 -16.51848 -16.47137 -15.92777 -15.76150 -15.37319 -15.28654 -14.55685 -14.52918 -14.33797 -14.23611 -14.15218 -13.82890 -13.67425 -13.46080 -13.27824 -13.22980 -13.19285 -13.06933 -13.03579 -12.95711 -12.76017 -12.52459 -12.35869 -12.32000 -12.21073 -12.12364 -11.82852 -11.74064 -11.19712 -10.77653 -10.66462 -10.07392 -10.00299 -9.43100 -8.24656 -6.39633 -0.95597 -0.21206 0.33057 1.34191 1.39074 1.45963 1.81854 1.83945 2.20915 2.36394 2.62358 2.94716 3.05011 3.07617 3.56864 3.59551 3.63969 3.79860 3.90745 3.94918 4.19560 4.25402 4.32177 4.44576 4.54062 4.56820 4.63774 4.67031 4.75120 4.76139 4.77258 4.88802 4.97243 4.97926 5.00446 5.06369 5.13724 5.14754 5.21733 5.24215 5.46767 5.53745 5.81991 5.85791 6.03706 6.67583 6.77591 7.26305 7.47166 8.82193 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.002484 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.840451 B =11269.233116 C =11982.670974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.533 4.533 3 C -0.153 4.153 4 S 2.484 3.516 5 O -0.971 6.971 6 O -0.980 6.980 7 C -0.666 4.666 8 C -0.036 4.036 9 C -0.139 4.139 10 C -0.018 4.018 11 C -0.097 4.097 12 C 0.496 3.504 13 O -0.596 6.596 14 N -0.611 5.611 15 C 0.075 3.925 16 C 0.259 3.741 17 C -0.542 4.542 18 H 0.054 0.946 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.967 3.033 22 H -0.257 1.257 23 H -0.279 1.279 24 H -0.280 1.280 25 C -0.136 4.136 26 C -0.031 4.031 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.167 0.833 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.024 0.976 42 H -0.006 1.006 43 H 0.267 0.733 44 H 0.147 0.853 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.733 14.114 -20.182 30.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.647 4.647 3 C -0.211 4.211 4 S 2.670 3.330 5 O -0.968 6.968 6 O -0.978 6.978 7 C -0.753 4.753 8 C -0.055 4.055 9 C -0.158 4.158 10 C -0.019 4.019 11 C -0.136 4.136 12 C 0.285 3.715 13 O -0.478 6.478 14 N -0.342 5.342 15 C -0.067 4.067 16 C 0.137 3.863 17 C -0.581 4.581 18 H 0.073 0.927 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.791 3.209 22 H -0.181 1.181 23 H -0.204 1.204 24 H -0.205 1.205 25 C -0.155 4.155 26 C -0.049 4.049 27 H 0.132 0.868 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.185 0.815 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.042 0.958 42 H 0.012 0.988 43 H 0.076 0.924 44 H 0.165 0.835 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.405 13.332 -18.923 29.573 hybrid contribution 1.184 -1.005 0.239 1.571 sum -17.221 12.327 -18.684 28.242 Atomic orbital electron populations 1.21895 0.88807 1.04572 1.06368 1.29769 1.07165 1.10245 1.17527 1.21880 1.02548 0.90692 1.05986 1.05894 0.74094 0.74716 0.78337 1.93501 1.81703 1.75572 1.46063 1.93508 1.85255 1.31049 1.87941 1.30477 1.25548 1.05231 1.14043 1.21077 0.94032 0.96340 0.94055 1.21389 0.95316 0.97708 1.01398 1.19933 0.94905 0.93800 0.93231 1.20904 0.90840 1.04678 0.97198 1.21199 0.82094 0.80447 0.87802 1.90693 1.62421 1.46918 1.47731 1.48193 1.06377 1.53495 1.26125 1.22001 0.95549 0.96945 0.92158 1.18733 0.91816 0.91784 0.83931 1.21679 1.40213 0.97289 0.98895 0.92739 1.25891 0.95411 1.03424 0.94644 1.70049 1.43526 1.38225 1.05115 0.85478 0.78442 0.78701 0.78261 1.18112 1.20411 1.20528 1.21412 0.93899 1.00744 0.99419 1.21103 0.95614 0.95081 0.93145 0.86812 0.90817 0.90661 0.81535 0.87625 0.90512 0.90485 0.83168 0.84273 0.84867 0.84218 0.90850 0.91738 0.88150 0.95778 0.98812 0.92416 0.83518 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.20 71.98 0.66 -0.66 16 2 C -0.53 -5.50 3.48 30.60 0.11 -5.39 16 3 C -0.15 -1.20 8.90 71.98 0.64 -0.56 16 4 S 2.48 54.68 4.67 -56.49 -0.26 54.41 16 5 O -0.97 -27.07 17.12 -127.65 -2.19 -29.26 16 6 O -0.98 -28.48 17.12 -127.65 -2.19 -30.67 16 7 C -0.67 -16.24 4.87 22.27 0.11 -16.13 16 8 C -0.04 -0.92 9.47 22.27 0.21 -0.71 16 9 C -0.14 -3.71 9.70 22.27 0.22 -3.49 16 10 C -0.02 -0.48 4.37 -19.87 -0.09 -0.57 16 11 C -0.10 -2.36 4.38 29.10 0.13 -2.23 16 12 C 0.50 19.80 7.67 87.65 0.67 20.48 16 13 O -0.60 -31.26 15.61 -3.03 -0.05 -31.30 16 14 N -0.61 -25.02 2.86 -851.14 -2.43 -27.45 16 15 C 0.08 2.02 10.24 127.77 1.31 3.33 16 16 C 0.26 14.03 5.16 85.63 0.44 14.47 16 17 C -0.54 -31.43 9.39 25.60 0.24 -31.19 16 18 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 19 C 0.01 0.30 5.46 84.65 0.46 0.77 16 20 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 21 Si 0.97 45.43 29.54 68.60 2.03 47.45 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 25 C -0.14 -3.39 9.70 22.27 0.22 -3.17 16 26 C -0.03 -0.73 8.46 22.27 0.19 -0.55 16 27 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.61 6.58 -2.39 -0.02 0.60 16 34 H 0.15 3.26 7.56 -2.91 -0.02 3.24 16 35 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 36 H 0.13 2.42 7.34 -2.39 -0.02 2.41 16 37 H 0.14 2.31 8.05 -2.38 -0.02 2.29 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.88 8.07 -2.38 -0.02 1.87 16 40 H 0.10 1.83 6.44 -2.39 -0.02 1.82 16 41 H 0.02 1.32 8.07 -2.38 -0.02 1.30 16 42 H -0.01 -0.40 7.42 -2.39 -0.02 -0.41 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 45 H 0.16 3.03 7.57 -2.91 -0.02 3.01 16 Total: -1.00 -90.79 388.33 1.69 -89.10 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.98 Total: 10.16 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 5.51 Total: -25.62 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.15 Total: -84.28 kcal Atomic # 8 Polarization: -86.81 SS G_CDS: -4.42 Total: -91.23 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 54.68 SS G_CDS: -0.26 Total: 54.41 kcal Total: -90.79 1.69 -89.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180575227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.790 kcal (2) G-P(sol) polarization free energy of solvation -90.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds