Wall clock time and date at job start Tue Mar 31 2020 23:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 C 1.50703 * 109.47215 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99732 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99951 * 179.97438 * 6 5 4 9 9 S 1.65603 * 119.99742 * 180.02562 * 8 6 5 10 10 O 1.42100 * 104.27468 * 181.07122 * 9 8 6 11 11 O 1.42094 * 104.27703 * 308.92774 * 9 8 6 12 12 C 1.81394 * 104.45060 * 64.99970 * 9 8 6 13 13 C 1.53003 * 109.47098 * 179.97438 * 12 9 8 14 14 C 1.50703 * 109.47132 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99817 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00047 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00248 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00072 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46967 * 90.00475 * 18 16 14 20 20 H 1.48500 * 109.47239 * 210.00227 * 18 16 14 21 21 H 1.48499 * 109.47449 * 330.00385 * 18 16 14 22 22 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 23 23 C 1.38237 * 119.99936 * 299.72798 * 22 2 1 24 24 C 1.38239 * 120.00019 * 179.79019 * 23 22 2 25 25 C 1.38233 * 119.99539 * 0.43796 * 24 23 22 26 26 C 1.38231 * 120.00493 * 359.81540 * 25 24 23 27 27 C 1.38236 * 119.99974 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 31 31 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 32 32 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 33 33 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 34 34 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 35 35 H 0.96998 * 120.00136 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47443 * 300.00111 * 12 9 8 37 37 H 1.09003 * 109.47232 * 60.00005 * 12 9 8 38 38 H 1.08999 * 109.47126 * 299.99728 * 13 12 9 39 39 H 1.09000 * 109.47137 * 60.00486 * 13 12 9 40 40 H 0.96997 * 120.00242 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.00490 * 359.97438 * 23 22 2 42 42 H 1.08000 * 120.00241 * 180.27418 * 24 23 22 43 43 H 1.08006 * 119.99896 * 179.83904 * 25 24 23 44 44 H 1.08002 * 120.00573 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.00273 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1382 -0.6411 3.7258 7 8 2.7588 -1.6774 3.6168 8 7 1.8983 -0.1245 4.9472 9 16 2.4514 -0.9045 6.2993 10 8 1.9980 -0.0990 7.3786 11 8 1.9981 -2.2420 6.1424 12 6 4.2583 -0.8244 6.1607 13 6 4.8936 -1.5194 7.3667 14 6 6.3948 -1.4524 7.2518 15 1 6.8501 -0.9634 6.4033 16 6 7.1868 -2.0152 8.2299 17 7 6.6323 -2.6111 9.2629 18 14 9.0475 -1.9328 8.0872 19 1 9.5403 -0.6975 8.7479 20 1 9.6477 -3.1201 8.7468 21 1 9.4337 -1.9150 6.6534 22 6 2.0323 -0.7105 -1.2304 23 6 1.7030 -2.0356 -1.4463 24 6 2.1601 -2.6860 -2.5772 25 6 2.9541 -2.0140 -3.4876 26 6 3.2878 -0.6905 -3.2691 27 6 2.8270 -0.0387 -2.1405 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -1.7198 1.2952 32 1 3.1264 -0.7995 1.2056 33 1 2.0700 1.0675 2.4493 34 1 0.5490 0.1472 2.5389 35 1 1.4016 0.7041 5.0344 36 1 4.5749 -1.3235 5.2448 37 1 4.5749 0.2183 6.1343 38 1 4.5770 -1.0199 8.2823 39 1 4.5772 -2.5621 7.3935 40 1 7.1896 -3.0074 9.9509 41 1 1.0861 -2.5618 -0.7330 42 1 1.8991 -3.7200 -2.7481 43 1 3.3134 -2.5229 -4.3698 44 1 3.9077 -0.1652 -3.9806 45 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181272608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:18 Heat of formation + Delta-G solvation = -113.593533 kcal Electronic energy + Delta-G solvation = -26453.556509 eV Core-core repulsion = 22562.181058 eV Total energy + Delta-G solvation = -3891.375451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.30121 -39.62444 -36.72261 -36.22802 -35.60668 -34.43229 -33.88911 -31.66655 -31.17543 -31.14549 -29.20207 -25.89951 -25.58495 -23.44035 -22.74916 -21.70519 -21.25912 -20.07362 -19.29776 -17.99826 -17.53003 -17.00830 -16.55929 -16.18498 -15.65926 -15.50632 -15.14676 -15.06097 -14.64575 -14.52117 -14.20104 -13.86687 -13.73928 -13.55967 -13.43310 -13.00050 -12.61411 -12.52720 -12.43858 -12.05817 -11.94896 -11.79338 -11.71888 -11.60922 -11.51923 -11.23061 -11.07665 -10.99449 -10.96141 -10.84698 -10.76970 -10.42339 -10.35250 -10.18994 -9.70402 -9.17575 -9.16121 -8.94327 -8.49443 -6.11703 -4.17147 0.51591 1.10732 1.15945 2.10813 2.75169 3.27290 3.33497 3.36959 3.53006 3.99670 4.17309 4.26023 4.37982 4.46901 4.62543 4.74307 4.74860 4.78885 4.84986 4.90036 4.98078 5.07564 5.11814 5.23633 5.24647 5.26109 5.31036 5.55687 5.57725 5.60860 5.68363 5.73172 5.79542 5.79852 5.94635 6.05917 6.23001 6.28004 6.39687 6.46391 6.65287 6.75987 7.28887 7.35648 7.49140 7.81368 8.17294 8.85820 9.47417 10.99441 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011855 B = 0.002474 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.264958 B =11313.027446 C =13009.847951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 H 0.081 0.919 4 C -0.103 4.103 5 C -0.144 4.144 6 C 0.530 3.470 7 O -0.488 6.488 8 N -1.061 6.061 9 S 2.566 3.434 10 O -0.956 6.956 11 O -0.939 6.939 12 C -0.576 4.576 13 C 0.029 3.971 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.074 4.074 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.118 4.118 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.428 0.572 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.814 8.733 -23.945 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 H 0.099 0.901 4 C -0.141 4.141 5 C -0.186 4.186 6 C 0.317 3.683 7 O -0.359 6.359 8 N -0.822 5.822 9 S 2.666 3.334 10 O -0.947 6.947 11 O -0.929 6.929 12 C -0.710 4.710 13 C -0.010 4.010 14 C -0.558 4.558 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.074 4.074 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.138 4.138 27 C -0.136 4.136 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.263 0.737 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.936 7.469 -23.230 27.618 hybrid contribution 1.275 0.698 -0.270 1.478 sum -11.661 8.167 -23.499 27.475 Atomic orbital electron populations 1.21935 0.94190 1.02462 1.01941 1.20195 0.96071 0.99134 0.91741 0.90109 1.21506 1.02652 0.99255 0.90699 1.21894 1.03567 1.00960 0.92149 1.20724 0.78098 0.84623 0.84893 1.90920 1.37215 1.21536 1.86244 1.55444 1.64971 1.38727 1.23061 1.06664 0.79893 0.74293 0.72516 1.93587 1.80901 1.69825 1.50356 1.93593 1.79808 1.35445 1.84078 1.30335 1.18551 1.10429 1.11704 1.18988 0.97433 0.95822 0.88726 1.20978 0.89708 1.37483 1.07670 0.91983 1.25064 0.99344 0.94928 0.95151 1.69953 1.35774 1.36587 1.10557 0.86446 0.84665 0.77687 0.78356 1.20473 1.20978 1.19708 1.19835 0.97460 0.94291 0.95861 1.21054 1.00161 0.94302 0.97482 1.21173 0.97994 0.99909 0.94584 1.21151 0.98808 0.94926 0.99559 1.21136 1.00032 0.95013 0.97656 1.21078 0.98087 0.99908 0.94514 0.92493 0.92210 0.91971 0.90433 0.90399 0.87814 0.87793 0.73721 0.85102 0.86111 0.94776 0.94590 0.92509 0.85956 0.86122 0.86301 0.86218 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.76 37.16 0.33 -0.53 16 2 C -0.05 -0.36 2.56 -91.77 -0.24 -0.60 16 3 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 4 C -0.10 -0.89 3.71 -26.73 -0.10 -0.99 16 5 C -0.14 -1.08 5.46 -27.88 -0.15 -1.23 16 6 C 0.53 6.62 7.57 -10.98 -0.08 6.53 16 7 O -0.49 -8.30 14.09 -11.59 -0.16 -8.46 16 8 N -1.06 -12.79 5.60 31.22 0.17 -12.62 16 9 S 2.57 46.23 5.11 -107.50 -0.55 45.68 16 10 O -0.96 -18.81 18.08 -57.54 -1.04 -19.85 16 11 O -0.94 -20.57 17.04 -64.79 -1.10 -21.67 16 12 C -0.58 -11.44 5.82 37.16 0.22 -11.22 16 13 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 14 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.07 -0.62 4.78 -104.62 -0.50 -1.12 16 23 C -0.11 -0.98 8.76 -39.58 -0.35 -1.33 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.13 -1.01 10.05 -39.59 -0.40 -1.41 16 26 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 27 C -0.12 -0.95 9.67 -39.58 -0.38 -1.33 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.37 7.41 -51.93 -0.38 -0.02 16 30 H 0.06 0.28 6.56 -51.93 -0.34 -0.06 16 31 H 0.08 0.76 7.51 -51.93 -0.39 0.37 16 32 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.54 6.56 -51.93 -0.34 0.20 16 35 H 0.43 3.27 8.79 -34.47 -0.30 2.96 16 36 H 0.13 2.57 7.19 -51.92 -0.37 2.20 16 37 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 38 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 0.97 7.16 -52.49 -0.38 0.60 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.76 7.95 -52.49 -0.42 0.34 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -37.82 386.89 -10.82 -48.63 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.68 Total: 0.70 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: -3.00 Total: -28.68 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.91 Total: -38.63 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -2.31 Total: -49.99 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 46.23 SS G_CDS: -0.55 Total: 45.68 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.82 -10.82 -48.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181272608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.961 kcal (2) G-P(sol) polarization free energy of solvation -37.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds