Wall clock time and date at job start Tue Mar 31 2020 23:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 C 1.50703 * 109.47215 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99732 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99951 * 179.97438 * 6 5 4 9 9 S 1.65603 * 119.99742 * 180.02562 * 8 6 5 10 10 O 1.42100 * 104.27468 * 181.07122 * 9 8 6 11 11 O 1.42094 * 104.27703 * 308.92774 * 9 8 6 12 12 C 1.81394 * 104.45060 * 64.99970 * 9 8 6 13 13 C 1.53003 * 109.47098 * 179.97438 * 12 9 8 14 14 C 1.50703 * 109.47132 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99817 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00047 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00248 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00072 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46967 * 90.00475 * 18 16 14 20 20 H 1.48500 * 109.47239 * 210.00227 * 18 16 14 21 21 H 1.48499 * 109.47449 * 330.00385 * 18 16 14 22 22 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 23 23 C 1.38237 * 119.99936 * 299.72798 * 22 2 1 24 24 C 1.38239 * 120.00019 * 179.79019 * 23 22 2 25 25 C 1.38233 * 119.99539 * 0.43796 * 24 23 22 26 26 C 1.38231 * 120.00493 * 359.81540 * 25 24 23 27 27 C 1.38236 * 119.99974 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 31 31 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 32 32 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 33 33 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 34 34 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 35 35 H 0.96998 * 120.00136 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47443 * 300.00111 * 12 9 8 37 37 H 1.09003 * 109.47232 * 60.00005 * 12 9 8 38 38 H 1.08999 * 109.47126 * 299.99728 * 13 12 9 39 39 H 1.09000 * 109.47137 * 60.00486 * 13 12 9 40 40 H 0.96997 * 120.00242 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.00490 * 359.97438 * 23 22 2 42 42 H 1.08000 * 120.00241 * 180.27418 * 24 23 22 43 43 H 1.08006 * 119.99896 * 179.83904 * 25 24 23 44 44 H 1.08002 * 120.00573 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.00273 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1382 -0.6411 3.7258 7 8 2.7588 -1.6774 3.6168 8 7 1.8983 -0.1245 4.9472 9 16 2.4514 -0.9045 6.2993 10 8 1.9980 -0.0990 7.3786 11 8 1.9981 -2.2420 6.1424 12 6 4.2583 -0.8244 6.1607 13 6 4.8936 -1.5194 7.3667 14 6 6.3948 -1.4524 7.2518 15 1 6.8501 -0.9634 6.4033 16 6 7.1868 -2.0152 8.2299 17 7 6.6323 -2.6111 9.2629 18 14 9.0475 -1.9328 8.0872 19 1 9.5403 -0.6975 8.7479 20 1 9.6477 -3.1201 8.7468 21 1 9.4337 -1.9150 6.6534 22 6 2.0323 -0.7105 -1.2304 23 6 1.7030 -2.0356 -1.4463 24 6 2.1601 -2.6860 -2.5772 25 6 2.9541 -2.0140 -3.4876 26 6 3.2878 -0.6905 -3.2691 27 6 2.8270 -0.0387 -2.1405 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -1.7198 1.2952 32 1 3.1264 -0.7995 1.2056 33 1 2.0700 1.0675 2.4493 34 1 0.5490 0.1472 2.5389 35 1 1.4016 0.7041 5.0344 36 1 4.5749 -1.3235 5.2448 37 1 4.5749 0.2183 6.1343 38 1 4.5770 -1.0199 8.2823 39 1 4.5772 -2.5621 7.3935 40 1 7.1896 -3.0074 9.9509 41 1 1.0861 -2.5618 -0.7330 42 1 1.8991 -3.7200 -2.7481 43 1 3.3134 -2.5229 -4.3698 44 1 3.9077 -0.1652 -3.9806 45 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181272608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:17 Heat of formation + Delta-G solvation = -139.495071 kcal Electronic energy + Delta-G solvation = -26454.679684 eV Core-core repulsion = 22562.181058 eV Total energy + Delta-G solvation = -3892.498626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.28857 -40.27779 -38.28381 -37.21585 -36.84427 -35.96544 -35.56181 -33.18838 -32.30987 -31.72804 -29.74905 -27.66473 -26.50824 -24.15769 -23.64762 -23.34561 -22.15947 -20.80434 -20.49980 -19.32629 -18.83411 -18.31135 -17.65885 -17.40704 -16.75318 -16.61893 -16.55168 -16.24276 -15.92150 -15.47678 -15.24521 -14.90185 -14.50902 -14.49350 -14.37134 -14.12438 -13.83338 -13.76196 -13.56511 -13.35807 -13.24576 -13.08842 -12.95736 -12.85244 -12.71253 -12.44979 -12.31739 -12.24430 -12.07734 -12.00594 -11.83765 -11.73533 -11.48699 -11.37192 -11.27899 -11.04250 -10.66787 -9.76468 -9.53608 -8.28702 -6.42900 -0.97468 0.51110 0.55495 1.09041 1.38963 1.41498 1.48413 1.52797 2.35889 2.58896 2.91980 3.04535 3.07234 3.34185 3.67379 3.86009 3.92652 4.03839 4.07950 4.18178 4.18804 4.23643 4.33782 4.44159 4.54432 4.62001 4.68512 4.69671 4.73369 4.76425 5.06309 5.09082 5.11797 5.21273 5.22683 5.23538 5.25760 5.42624 5.47764 5.64765 5.65023 5.68498 5.76534 5.81604 6.02515 6.19037 6.52943 6.69780 7.27132 8.83783 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011855 B = 0.002474 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.264958 B =11313.027446 C =13009.847951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 H 0.101 0.899 4 C -0.103 4.103 5 C -0.133 4.133 6 C 0.527 3.473 7 O -0.537 6.537 8 N -1.036 6.036 9 S 2.601 3.399 10 O -0.973 6.973 11 O -0.982 6.982 12 C -0.580 4.580 13 C 0.022 3.978 14 C -0.541 4.541 15 H 0.073 0.927 16 C -0.004 4.004 17 N -0.933 5.933 18 Si 0.976 3.024 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.261 1.261 22 C -0.086 4.086 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.138 4.138 26 C -0.130 4.130 27 C -0.128 4.128 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.452 0.548 36 H 0.132 0.868 37 H 0.151 0.849 38 H 0.015 0.985 39 H 0.003 0.997 40 H 0.268 0.732 41 H 0.121 0.879 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 11.429 -25.789 30.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 H 0.120 0.880 4 C -0.141 4.141 5 C -0.174 4.174 6 C 0.316 3.684 7 O -0.411 6.411 8 N -0.804 5.804 9 S 2.699 3.301 10 O -0.963 6.963 11 O -0.972 6.972 12 C -0.712 4.712 13 C -0.017 4.017 14 C -0.580 4.580 15 H 0.092 0.908 16 C -0.202 4.202 17 N -0.573 5.573 18 Si 0.799 3.201 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.185 1.185 22 C -0.086 4.086 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.156 4.156 26 C -0.148 4.148 27 C -0.146 4.146 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.293 0.707 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.034 0.966 39 H 0.021 0.979 40 H 0.077 0.923 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.908 10.204 -25.067 29.985 hybrid contribution 1.189 -0.137 0.220 1.217 sum -11.719 10.067 -24.847 29.258 Atomic orbital electron populations 1.21946 0.93276 1.02230 1.03028 1.20173 0.96710 0.99557 0.89859 0.88031 1.21461 1.01328 0.98995 0.92327 1.22053 1.05608 1.01636 0.88129 1.21781 0.76844 0.84026 0.85760 1.90918 1.39607 1.24005 1.86588 1.54858 1.64681 1.39543 1.21367 1.05288 0.78404 0.73388 0.72988 1.93558 1.80596 1.69924 1.52224 1.93542 1.79997 1.38460 1.85169 1.30239 1.20800 1.11495 1.08703 1.18821 0.97548 0.94493 0.90794 1.21478 0.91034 1.37423 1.08045 0.90838 1.26126 1.05063 0.94345 0.94668 1.70095 1.37920 1.37671 1.11570 0.85286 0.77836 0.78050 0.78928 1.19116 1.20744 1.18482 1.20100 0.97536 0.94253 0.96678 1.21222 1.00779 0.95010 0.97829 1.21415 0.98372 1.00611 0.94840 1.21426 0.98758 0.95363 1.00066 1.21457 1.00083 0.95125 0.98104 1.21379 0.97854 1.00883 0.94469 0.92245 0.93181 0.90008 0.92395 0.92438 0.83733 0.84453 0.70728 0.85001 0.83047 0.96640 0.97868 0.92284 0.86081 0.85270 0.84794 0.84431 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.76 71.98 0.63 -0.68 16 2 C -0.04 -0.50 2.56 -11.54 -0.03 -0.53 16 3 H 0.10 0.73 7.88 -2.39 -0.02 0.71 16 4 C -0.10 -1.59 3.71 30.59 0.11 -1.48 16 5 C -0.13 -1.49 5.46 29.85 0.16 -1.33 16 6 C 0.53 12.06 7.57 87.66 0.66 12.72 16 7 O -0.54 -18.20 14.09 13.35 0.19 -18.01 16 8 N -1.04 -22.57 5.60 -173.53 -0.97 -23.54 16 9 S 2.60 93.07 5.11 -56.49 -0.29 92.78 16 10 O -0.97 -37.66 18.08 -127.65 -2.31 -39.97 16 11 O -0.98 -43.97 17.04 -120.72 -2.06 -46.03 16 12 C -0.58 -23.11 5.82 71.98 0.42 -22.69 16 13 C 0.02 1.21 4.98 29.85 0.15 1.36 16 14 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 15 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 16 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 17 N -0.93 -57.59 13.29 21.44 0.28 -57.31 16 18 Si 0.98 44.12 29.54 68.60 2.03 46.15 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 22 C -0.09 -1.33 4.78 -19.87 -0.09 -1.43 16 23 C -0.13 -2.29 8.76 22.27 0.20 -2.09 16 24 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 25 C -0.14 -2.12 10.05 22.27 0.22 -1.90 16 26 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 27 C -0.13 -1.85 9.67 22.27 0.22 -1.64 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.54 7.41 -2.39 -0.02 0.53 16 30 H 0.08 0.39 6.56 -2.39 -0.02 0.38 16 31 H 0.06 1.12 7.51 -2.38 -0.02 1.10 16 32 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 33 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.14 0.73 6.56 -2.39 -0.02 0.71 16 35 H 0.45 5.19 8.79 -96.74 -0.85 4.34 16 36 H 0.13 5.23 7.19 -2.39 -0.02 5.21 16 37 H 0.15 4.96 8.14 -2.39 -0.02 4.94 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.12 2.02 7.16 -2.91 -0.02 2.00 16 42 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 44 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.14 1.39 7.95 -2.91 -0.02 1.37 16 Total: -1.00 -85.92 386.89 0.81 -85.11 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.14 Total: 14.54 kcal Atomic # 6 Polarization: -57.51 SS G_CDS: 3.79 Total: -53.72 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -0.69 Total: -80.85 kcal Atomic # 8 Polarization: -99.84 SS G_CDS: -4.18 Total: -104.01 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 93.07 SS G_CDS: -0.29 Total: 92.78 kcal Total: -85.92 0.81 -85.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181272608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.381 kcal (2) G-P(sol) polarization free energy of solvation -85.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds