Wall clock time and date at job start Tue Mar 31 2020 23:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 C 1.50701 * 109.47024 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00074 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99965 * 179.97438 * 6 5 4 9 9 S 1.65599 * 120.00005 * 180.02562 * 8 6 5 10 10 O 1.42097 * 104.27694 * 181.07573 * 9 8 6 11 11 O 1.42108 * 104.27496 * 308.93250 * 9 8 6 12 12 C 1.81396 * 104.45154 * 64.99884 * 9 8 6 13 13 C 1.52995 * 109.47483 * 179.97438 * 12 9 8 14 14 C 1.50700 * 109.47483 * 180.02562 * 13 12 9 15 15 H 1.07992 * 119.99668 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99685 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00670 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99519 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47297 * 59.99625 * 18 16 14 20 20 H 1.48502 * 109.47248 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47040 * 299.99860 * 18 16 14 22 22 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 23 23 C 1.38237 * 119.99747 * 59.72563 * 22 2 1 24 24 C 1.38240 * 119.99788 * 179.81066 * 23 22 2 25 25 C 1.38236 * 119.99657 * 0.39831 * 24 23 22 26 26 C 1.38230 * 120.00403 * 359.85459 * 25 24 23 27 27 C 1.38232 * 120.00112 * 240.00114 * 22 2 1 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 32 32 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 33 33 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 34 34 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 35 35 H 0.97002 * 119.99484 * 0.02562 * 8 6 5 36 36 H 1.09004 * 109.47014 * 300.00461 * 12 9 8 37 37 H 1.09002 * 109.46794 * 60.00199 * 12 9 8 38 38 H 1.08999 * 109.46835 * 300.00689 * 13 12 9 39 39 H 1.09002 * 109.46891 * 60.00322 * 13 12 9 40 40 H 0.96994 * 120.00252 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.00234 * 0.02562 * 23 22 2 42 42 H 1.07995 * 119.99993 * 180.23158 * 24 23 22 43 43 H 1.08005 * 119.99783 * 179.83592 * 25 24 23 44 44 H 1.08000 * 120.00473 * 179.97438 * 26 25 24 45 45 H 1.08005 * 119.99991 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 6 2.1383 -0.6412 -3.7257 7 8 2.7588 -1.6775 -3.6167 8 7 1.8975 -0.1252 -4.9473 9 16 2.4496 -0.9058 -6.2994 10 8 2.0395 -0.0742 -7.3762 11 8 3.8267 -1.1350 -6.0340 12 6 1.5364 -2.4730 -6.3219 13 6 1.9629 -3.2944 -7.5401 14 6 1.2037 -4.5961 -7.5591 15 1 0.4884 -4.8154 -6.7804 16 6 1.4226 -5.5071 -8.5707 17 7 2.2942 -5.2403 -9.5187 18 14 0.4811 -7.1203 -8.5946 19 1 -0.9756 -6.8422 -8.6711 20 1 0.8960 -7.9182 -9.7764 21 1 0.7749 -7.8833 -7.3550 22 6 2.0323 -0.7104 1.2305 23 6 1.6936 -2.0322 1.4521 24 6 2.1576 -2.6850 2.5788 25 6 2.9535 -2.0136 3.4881 26 6 3.2878 -0.6903 3.2691 27 6 2.8270 -0.0386 2.1405 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 0.5490 0.1471 -2.5390 34 1 2.0700 1.0675 -2.4494 35 1 1.4009 0.7035 -5.0344 36 1 1.7528 -3.0327 -5.4119 37 1 0.4670 -2.2695 -6.3776 38 1 1.7461 -2.7344 -8.4498 39 1 3.0323 -3.4979 -7.4848 40 1 2.4484 -5.8813 -10.2301 41 1 1.0694 -2.5559 0.7432 42 1 1.8961 -3.7187 2.7501 43 1 3.3138 -2.5228 4.3697 44 1 3.9092 -0.1656 3.9797 45 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181272622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:22 Heat of formation + Delta-G solvation = -113.552044 kcal Electronic energy + Delta-G solvation = -26468.697187 eV Core-core repulsion = 22577.323536 eV Total energy + Delta-G solvation = -3891.373652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.30168 -39.62572 -36.72181 -36.22724 -35.60428 -34.43237 -33.89093 -31.66835 -31.17842 -31.14685 -29.19657 -25.89652 -25.58847 -23.43977 -22.75003 -21.70595 -21.25863 -20.07116 -19.30108 -17.99799 -17.53106 -17.00954 -16.53152 -16.22330 -15.67252 -15.43222 -15.22841 -15.02585 -14.64923 -14.52709 -14.19401 -13.88065 -13.73618 -13.55691 -13.42613 -12.99708 -12.61165 -12.53610 -12.42666 -12.06723 -11.94282 -11.79517 -11.71780 -11.60735 -11.51838 -11.22183 -11.06860 -11.00003 -10.96113 -10.85808 -10.76651 -10.41532 -10.37431 -10.18920 -9.70652 -9.18597 -9.16274 -8.94447 -8.49297 -6.11674 -4.17240 0.51525 1.10608 1.15777 2.10797 2.75191 3.28428 3.32984 3.35035 3.52890 3.99634 4.17389 4.26167 4.37723 4.46207 4.63854 4.74149 4.74421 4.78853 4.84182 4.90253 4.98504 5.07865 5.11982 5.23484 5.24716 5.25903 5.31167 5.55977 5.58111 5.60600 5.68983 5.72896 5.79557 5.79895 5.95008 6.06021 6.22770 6.28030 6.39632 6.46094 6.65258 6.75866 7.28690 7.35567 7.49143 7.81018 8.17170 8.85430 9.47176 10.99415 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.002442 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.831265 B =11462.177823 C =12952.433653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 H 0.080 0.920 4 C -0.103 4.103 5 C -0.144 4.144 6 C 0.530 3.470 7 O -0.488 6.488 8 N -1.061 6.061 9 S 2.566 3.434 10 O -0.956 6.956 11 O -0.939 6.939 12 C -0.575 4.575 13 C 0.030 3.970 14 C -0.519 4.519 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.902 3.098 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.074 4.074 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.118 4.118 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.428 0.572 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 13.908 24.429 28.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.071 4.071 3 H 0.098 0.902 4 C -0.141 4.141 5 C -0.186 4.186 6 C 0.317 3.683 7 O -0.359 6.359 8 N -0.822 5.822 9 S 2.666 3.334 10 O -0.947 6.947 11 O -0.929 6.929 12 C -0.710 4.710 13 C -0.009 4.009 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.729 3.271 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.074 4.074 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.136 4.136 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.263 0.737 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.020 13.465 23.787 27.500 hybrid contribution -1.156 -0.775 0.143 1.399 sum -4.176 12.690 23.929 27.406 Atomic orbital electron populations 1.21938 0.94135 1.02523 1.01963 1.20197 0.96106 0.99089 0.91745 0.90164 1.21504 1.02633 0.99264 0.90701 1.21896 1.03534 1.00981 0.92158 1.20723 0.77711 0.84990 0.84912 1.90919 1.36408 1.22333 1.86253 1.55446 1.66418 1.37481 1.22861 1.06675 0.76361 0.77929 0.72434 1.93587 1.83885 1.66250 1.50943 1.93597 1.30419 1.86002 1.82894 1.30333 1.12433 1.16733 1.11504 1.18981 0.98329 0.95159 0.88469 1.20934 1.23632 1.01138 1.10206 0.92041 1.25064 0.95325 0.98748 0.95336 1.69938 1.33768 1.36293 1.12845 0.86506 0.80053 0.82922 0.77648 1.20083 1.21060 1.20028 1.19837 0.97432 0.94330 0.95838 1.21065 1.00064 0.94326 0.97524 1.21181 0.97910 0.99915 0.94619 1.21150 0.98849 0.94922 0.99536 1.21130 1.00061 0.95017 0.97656 1.21071 0.98194 0.99860 0.94511 0.92145 0.92498 0.91941 0.90462 0.90377 0.87652 0.87957 0.73721 0.85107 0.86113 0.94783 0.94599 0.92445 0.85904 0.86090 0.86304 0.86244 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.76 37.16 0.33 -0.54 16 2 C -0.05 -0.36 2.56 -91.77 -0.24 -0.60 16 3 H 0.08 0.45 7.88 -51.93 -0.41 0.04 16 4 C -0.10 -0.89 3.72 -26.73 -0.10 -0.99 16 5 C -0.14 -1.08 5.46 -27.88 -0.15 -1.23 16 6 C 0.53 6.62 7.57 -10.98 -0.08 6.53 16 7 O -0.49 -8.30 14.08 -11.57 -0.16 -8.46 16 8 N -1.06 -12.80 5.60 31.22 0.17 -12.63 16 9 S 2.57 46.25 5.11 -107.50 -0.55 45.70 16 10 O -0.96 -18.82 18.08 -57.54 -1.04 -19.86 16 11 O -0.94 -20.64 17.04 -64.79 -1.10 -21.74 16 12 C -0.58 -11.39 5.82 37.16 0.22 -11.18 16 13 C 0.03 0.78 4.98 -27.89 -0.14 0.64 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 18 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.07 -0.62 4.78 -104.62 -0.50 -1.12 16 23 C -0.11 -0.98 8.76 -39.58 -0.35 -1.33 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.13 -1.01 10.05 -39.58 -0.40 -1.40 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.12 -0.94 9.67 -39.58 -0.38 -1.33 16 28 H 0.06 0.38 7.38 -51.93 -0.38 -0.01 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 31 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.08 0.75 7.54 -51.93 -0.39 0.36 16 33 H 0.11 0.52 6.57 -51.93 -0.34 0.18 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.43 3.27 8.79 -34.48 -0.30 2.96 16 36 H 0.13 2.55 7.19 -51.92 -0.37 2.18 16 37 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.12 0.99 7.16 -52.48 -0.38 0.61 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.75 7.95 -52.48 -0.42 0.33 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -37.76 386.89 -10.82 -48.58 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.68 Total: 0.74 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: -3.00 Total: -28.59 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.91 Total: -38.59 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -2.31 Total: -50.06 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 46.25 SS G_CDS: -0.55 Total: 45.70 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.76 -10.82 -48.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181272622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.976 kcal (2) G-P(sol) polarization free energy of solvation -37.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds