Wall clock time and date at job start Tue Mar 31 2020 22:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99736 * 2 1 4 4 C 1.53000 * 109.47044 * 269.99573 * 3 2 1 5 5 C 1.52998 * 109.47261 * 300.00201 * 4 3 2 6 6 C 1.53005 * 109.46903 * 60.00040 * 4 3 2 7 7 O 1.42898 * 109.47206 * 60.00176 * 6 4 3 8 8 C 1.53001 * 109.47416 * 179.97438 * 4 3 2 9 9 O 1.42895 * 109.47165 * 179.97438 * 8 4 3 10 10 C 1.34777 * 120.00490 * 179.97438 * 2 1 3 11 11 O 1.21547 * 120.00154 * 174.88438 * 10 2 1 12 12 C 1.47862 * 119.99652 * 354.88731 * 10 2 1 13 13 C 1.39679 * 120.10220 * 329.30545 * 12 10 2 14 14 C 1.38036 * 120.03529 * 180.02562 * 13 12 10 15 15 C 1.38179 * 120.24589 * 359.67913 * 14 13 12 16 16 C 1.39182 * 120.20155 * 0.59500 * 15 14 13 17 17 S 1.76202 * 120.01990 * 179.70016 * 16 15 14 18 18 C 1.76209 * 99.99700 * 264.81746 * 17 16 15 19 19 H 1.07997 * 120.00258 * 5.02891 * 18 17 16 20 20 C 1.38735 * 119.99622 * 185.02046 * 18 17 16 21 21 N 1.31621 * 120.00028 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99690 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47074 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46884 * 120.00037 * 22 20 18 25 25 H 1.48496 * 109.46983 * 240.00351 * 22 20 18 26 26 C 1.38867 * 119.95784 * 359.42863 * 16 15 14 27 27 H 1.08993 * 109.47230 * 271.02722 * 1 2 3 28 28 H 1.08998 * 109.47274 * 31.03496 * 1 2 3 29 29 H 1.09003 * 109.46516 * 151.02634 * 1 2 3 30 30 H 1.09005 * 109.46764 * 29.99536 * 3 2 1 31 31 H 1.09001 * 109.47091 * 149.99612 * 3 2 1 32 32 H 1.09002 * 109.47251 * 59.99494 * 5 4 3 33 33 H 1.08997 * 109.47605 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.46936 * 299.99999 * 5 4 3 35 35 H 1.09006 * 109.46871 * 180.02562 * 6 4 3 36 36 H 1.09003 * 109.47166 * 299.99594 * 6 4 3 37 37 H 0.96705 * 113.99539 * 179.97438 * 7 6 4 38 38 H 1.09005 * 109.46669 * 300.00133 * 8 4 3 39 39 H 1.09001 * 109.46814 * 59.99981 * 8 4 3 40 40 H 0.96702 * 113.99673 * 179.97438 * 9 8 4 41 41 H 1.07994 * 119.97813 * 0.02562 * 13 12 10 42 42 H 1.07997 * 119.87617 * 179.97438 * 14 13 12 43 43 H 1.08005 * 119.89915 * 180.32001 * 15 14 13 44 44 H 0.97003 * 119.99550 * 180.02562 * 21 20 18 45 45 H 1.07998 * 120.12102 * 180.25219 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2795 0.6441 -2.1637 6 6 1.1157 1.8933 -2.1638 7 8 0.3433 2.8892 -1.4903 8 6 3.2169 3.0358 -1.4426 9 8 3.4557 3.4479 -2.7899 10 6 2.1390 -1.1671 0.0005 11 8 3.3509 -1.1692 -0.0933 12 6 1.4042 -2.4451 0.1152 13 6 0.2055 -2.5022 0.8300 14 6 -0.4792 -3.6961 0.9366 15 6 0.0132 -4.8371 0.3325 16 6 1.2096 -4.7929 -0.3773 17 16 1.8370 -6.2526 -1.1391 18 6 2.9401 -6.8045 0.1194 19 1 2.9835 -6.2850 1.0652 20 6 3.7526 -7.9064 -0.1048 21 7 3.6999 -8.5393 -1.2577 22 14 4.9215 -8.4919 1.2296 23 1 4.7897 -7.6167 2.4219 24 1 4.5865 -9.8897 1.6026 25 1 6.3170 -8.4350 0.7250 26 6 1.9055 -3.5965 -0.4896 27 1 -0.3633 0.0184 1.0274 28 1 -0.3634 0.8805 -0.5298 29 1 -0.3632 -0.8991 -0.4978 30 1 1.6083 2.0284 0.5138 31 1 3.1499 1.1385 0.5139 32 1 2.7345 -0.2999 -2.1636 33 1 3.4608 0.9585 -3.1915 34 1 4.2319 0.5139 -1.6498 35 1 1.2974 2.2075 -3.1917 36 1 0.5707 0.9492 -2.1638 37 1 -0.5190 3.0578 -1.8941 38 1 2.6274 3.7952 -0.9289 39 1 4.1693 2.9059 -0.9286 40 1 3.9370 4.2831 -2.8662 41 1 -0.1858 -1.6118 1.2994 42 1 -1.4055 -3.7374 1.4902 43 1 -0.5297 -5.7671 0.4152 44 1 4.2678 -9.3099 -1.4143 45 1 2.8320 -3.5583 -1.0433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182929689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:33 Heat of formation + Delta-G solvation = -99.300178 kcal Electronic energy + Delta-G solvation = -27610.040564 eV Core-core repulsion = 23719.284919 eV Total energy + Delta-G solvation = -3890.755645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65228 -38.83462 -37.64890 -36.48290 -35.58441 -33.78270 -32.49556 -30.81397 -30.55561 -27.71239 -26.96355 -25.94977 -25.76262 -25.55293 -22.80213 -22.27684 -20.00086 -18.98598 -17.98380 -17.77647 -17.49817 -16.97748 -16.64399 -15.99043 -15.86367 -15.33737 -14.94746 -14.83995 -14.69841 -14.14823 -14.06017 -13.81790 -13.46861 -13.26359 -13.10880 -12.92966 -12.70998 -12.62648 -12.45789 -12.09200 -11.99467 -11.37871 -11.34157 -11.19446 -11.13111 -11.09051 -11.06020 -10.68502 -10.64599 -10.26412 -10.09352 -9.91143 -9.70754 -9.15393 -8.96505 -8.74857 -8.54495 -7.99952 -6.70744 -6.27789 -4.01556 1.24372 1.67712 2.82824 3.01826 3.20613 3.23716 3.30192 3.48597 3.88565 4.05748 4.17494 4.25379 4.50233 4.58262 4.68817 4.91732 4.92706 5.08882 5.12841 5.18206 5.22404 5.24893 5.29824 5.36999 5.46182 5.48365 5.53522 5.60524 5.64755 5.75163 5.78192 5.88553 5.99416 6.01599 6.07134 6.27275 6.38303 6.44281 6.60783 6.66473 6.93909 7.20421 7.32045 7.35380 7.38932 7.59496 8.25668 8.34673 9.18562 10.78989 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002817 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.214813 B = 9935.541229 C =10742.638705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.611 5.611 3 C 0.132 3.868 4 C -0.071 4.071 5 C -0.130 4.130 6 C 0.086 3.914 7 O -0.573 6.573 8 C 0.092 3.908 9 O -0.569 6.569 10 C 0.563 3.437 11 O -0.525 6.525 12 C -0.152 4.152 13 C -0.101 4.101 14 C -0.142 4.142 15 C -0.058 4.058 16 C -0.106 4.106 17 S -0.037 6.037 18 C -0.517 4.517 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.871 5.871 22 Si 0.921 3.079 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.278 1.278 26 C -0.023 4.023 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.377 0.623 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.377 0.623 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.130 0.870 44 H 0.269 0.731 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 23.568 0.966 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.345 5.345 3 C 0.008 3.992 4 C -0.073 4.073 5 C -0.187 4.187 6 C 0.008 3.992 7 O -0.378 6.378 8 C 0.014 3.986 9 O -0.374 6.374 10 C 0.353 3.647 11 O -0.402 6.402 12 C -0.157 4.157 13 C -0.119 4.119 14 C -0.162 4.162 15 C -0.079 4.079 16 C -0.216 4.216 17 S 0.198 5.802 18 C -0.665 4.665 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.045 4.045 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.223 0.777 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.224 0.776 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.079 0.921 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.290 22.334 0.022 23.823 hybrid contribution 0.716 0.685 1.773 2.032 sum -7.573 23.019 1.795 24.299 Atomic orbital electron populations 1.22327 0.79700 1.03770 1.01621 1.47592 1.06877 1.05408 1.74578 1.21316 0.97966 0.84859 0.95010 1.21019 0.94359 0.95208 0.96693 1.21743 1.00041 0.96959 0.99990 1.22203 0.91151 0.90557 0.95252 1.86410 1.33248 1.60691 1.57441 1.22010 0.97968 0.95255 0.83397 1.86446 1.79935 1.44195 1.26835 1.18509 0.87108 0.83441 0.75643 1.90781 1.13712 1.87046 1.48625 1.19823 0.97278 0.93600 1.04982 1.21637 0.93729 0.98492 0.98086 1.21075 1.00611 0.92817 1.01716 1.21940 0.94910 0.98085 0.92947 1.22811 0.97193 1.00369 1.01254 1.83575 1.52574 1.17686 1.26410 1.22882 1.25673 1.16948 1.00984 0.90559 1.25003 0.96517 0.95629 0.96443 1.69997 1.38474 1.19691 1.22462 0.86069 0.79932 0.78494 0.80844 1.19465 1.20497 1.20419 1.21872 0.97910 0.90027 0.94649 0.92444 0.90562 0.90040 0.89693 0.89837 0.92501 0.92438 0.91313 0.92910 0.93255 0.77659 0.92862 0.93629 0.77635 0.85229 0.85945 0.85195 0.92134 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 7.71 59.85 0.46 1.07 16 2 N -0.61 -7.32 2.40 -182.68 -0.44 -7.76 16 3 C 0.13 1.43 4.45 -4.04 -0.02 1.41 16 4 C -0.07 -0.76 0.51 -154.51 -0.08 -0.84 16 5 C -0.13 -1.73 6.92 37.16 0.26 -1.47 16 6 C 0.09 0.81 4.92 37.16 0.18 0.99 16 7 O -0.57 -4.41 11.28 -35.23 -0.40 -4.80 16 8 C 0.09 0.85 5.77 37.16 0.21 1.06 16 9 O -0.57 -5.28 12.31 -35.23 -0.43 -5.71 16 10 C 0.56 9.05 5.99 -12.32 -0.07 8.98 16 11 O -0.53 -10.11 14.12 5.32 0.08 -10.03 16 12 C -0.15 -2.56 5.31 -104.99 -0.56 -3.12 16 13 C -0.10 -1.40 7.61 -39.12 -0.30 -1.69 16 14 C -0.14 -2.04 10.02 -39.68 -0.40 -2.43 16 15 C -0.06 -1.03 9.79 -39.25 -0.38 -1.42 16 16 C -0.11 -2.26 5.45 -39.00 -0.21 -2.47 16 17 S -0.04 -0.96 21.41 -107.50 -2.30 -3.26 16 18 C -0.52 -14.76 9.46 30.92 0.29 -14.47 16 19 H 0.08 2.18 7.79 -52.49 -0.41 1.77 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -25.61 13.22 55.49 0.73 -24.88 16 22 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 C -0.02 -0.46 9.35 -38.92 -0.36 -0.83 16 27 H 0.06 0.43 6.77 -51.93 -0.35 0.08 16 28 H 0.08 0.56 5.24 -51.93 -0.27 0.29 16 29 H 0.08 0.77 5.82 -51.93 -0.30 0.47 16 30 H 0.08 0.79 7.61 -51.93 -0.40 0.40 16 31 H 0.08 1.01 7.50 -51.93 -0.39 0.62 16 32 H 0.06 0.86 6.06 -51.93 -0.31 0.54 16 33 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 34 H 0.07 1.00 7.63 -51.93 -0.40 0.61 16 35 H 0.05 0.54 7.68 -51.93 -0.40 0.14 16 36 H 0.05 0.47 5.97 -51.93 -0.31 0.16 16 37 H 0.38 1.44 9.12 45.56 0.42 1.85 16 38 H 0.05 0.46 7.68 -51.93 -0.40 0.06 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.38 1.82 9.12 45.56 0.42 2.24 16 41 H 0.13 1.37 4.91 -52.49 -0.26 1.11 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.13 2.22 8.06 -52.48 -0.42 1.79 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.13 2.94 7.93 -52.49 -0.42 2.52 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -34.63 371.46 -7.84 -42.48 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.58 Total: 4.90 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.07 Total: -13.26 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.30 Total: -32.64 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.76 Total: -20.55 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.30 Total: -3.26 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.63 -7.84 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182929689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.823 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds