Wall clock time and date at job start Tue Mar 31 2020 22:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99736 * 2 1 4 4 C 1.53000 * 109.47044 * 269.99573 * 3 2 1 5 5 C 1.52998 * 109.47261 * 300.00201 * 4 3 2 6 6 C 1.53005 * 109.46903 * 60.00040 * 4 3 2 7 7 O 1.42898 * 109.47206 * 60.00176 * 6 4 3 8 8 C 1.53001 * 109.47416 * 179.97438 * 4 3 2 9 9 O 1.42895 * 109.47165 * 179.97438 * 8 4 3 10 10 C 1.34777 * 120.00490 * 179.97438 * 2 1 3 11 11 O 1.21547 * 120.00154 * 174.88438 * 10 2 1 12 12 C 1.47862 * 119.99652 * 354.88731 * 10 2 1 13 13 C 1.39679 * 120.10220 * 329.30545 * 12 10 2 14 14 C 1.38036 * 120.03529 * 180.02562 * 13 12 10 15 15 C 1.38179 * 120.24589 * 359.67913 * 14 13 12 16 16 C 1.39182 * 120.20155 * 0.59500 * 15 14 13 17 17 S 1.76202 * 120.01990 * 179.70016 * 16 15 14 18 18 C 1.76209 * 99.99700 * 264.81746 * 17 16 15 19 19 H 1.07997 * 120.00258 * 5.02891 * 18 17 16 20 20 C 1.38735 * 119.99622 * 185.02046 * 18 17 16 21 21 N 1.31621 * 120.00028 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99690 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47074 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46884 * 120.00037 * 22 20 18 25 25 H 1.48496 * 109.46983 * 240.00351 * 22 20 18 26 26 C 1.38867 * 119.95784 * 359.42863 * 16 15 14 27 27 H 1.08993 * 109.47230 * 271.02722 * 1 2 3 28 28 H 1.08998 * 109.47274 * 31.03496 * 1 2 3 29 29 H 1.09003 * 109.46516 * 151.02634 * 1 2 3 30 30 H 1.09005 * 109.46764 * 29.99536 * 3 2 1 31 31 H 1.09001 * 109.47091 * 149.99612 * 3 2 1 32 32 H 1.09002 * 109.47251 * 59.99494 * 5 4 3 33 33 H 1.08997 * 109.47605 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.46936 * 299.99999 * 5 4 3 35 35 H 1.09006 * 109.46871 * 180.02562 * 6 4 3 36 36 H 1.09003 * 109.47166 * 299.99594 * 6 4 3 37 37 H 0.96705 * 113.99539 * 179.97438 * 7 6 4 38 38 H 1.09005 * 109.46669 * 300.00133 * 8 4 3 39 39 H 1.09001 * 109.46814 * 59.99981 * 8 4 3 40 40 H 0.96702 * 113.99673 * 179.97438 * 9 8 4 41 41 H 1.07994 * 119.97813 * 0.02562 * 13 12 10 42 42 H 1.07997 * 119.87617 * 179.97438 * 14 13 12 43 43 H 1.08005 * 119.89915 * 180.32001 * 15 14 13 44 44 H 0.97003 * 119.99550 * 180.02562 * 21 20 18 45 45 H 1.07998 * 120.12102 * 180.25219 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2795 0.6441 -2.1637 6 6 1.1157 1.8933 -2.1638 7 8 0.3433 2.8892 -1.4903 8 6 3.2169 3.0358 -1.4426 9 8 3.4557 3.4479 -2.7899 10 6 2.1390 -1.1671 0.0005 11 8 3.3509 -1.1692 -0.0933 12 6 1.4042 -2.4451 0.1152 13 6 0.2055 -2.5022 0.8300 14 6 -0.4792 -3.6961 0.9366 15 6 0.0132 -4.8371 0.3325 16 6 1.2096 -4.7929 -0.3773 17 16 1.8370 -6.2526 -1.1391 18 6 2.9401 -6.8045 0.1194 19 1 2.9835 -6.2850 1.0652 20 6 3.7526 -7.9064 -0.1048 21 7 3.6999 -8.5393 -1.2577 22 14 4.9215 -8.4919 1.2296 23 1 4.7897 -7.6167 2.4219 24 1 4.5865 -9.8897 1.6026 25 1 6.3170 -8.4350 0.7250 26 6 1.9055 -3.5965 -0.4896 27 1 -0.3633 0.0184 1.0274 28 1 -0.3634 0.8805 -0.5298 29 1 -0.3632 -0.8991 -0.4978 30 1 1.6083 2.0284 0.5138 31 1 3.1499 1.1385 0.5139 32 1 2.7345 -0.2999 -2.1636 33 1 3.4608 0.9585 -3.1915 34 1 4.2319 0.5139 -1.6498 35 1 1.2974 2.2075 -3.1917 36 1 0.5707 0.9492 -2.1638 37 1 -0.5190 3.0578 -1.8941 38 1 2.6274 3.7952 -0.9289 39 1 4.1693 2.9059 -0.9286 40 1 3.9370 4.2831 -2.8662 41 1 -0.1858 -1.6118 1.2994 42 1 -1.4055 -3.7374 1.4902 43 1 -0.5297 -5.7671 0.4152 44 1 4.2678 -9.3099 -1.4143 45 1 2.8320 -3.5583 -1.0433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182929689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:32 Heat of formation + Delta-G solvation = -126.228850 kcal Electronic energy + Delta-G solvation = -27611.208279 eV Core-core repulsion = 23719.284919 eV Total energy + Delta-G solvation = -3891.923359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.76403 -39.87010 -38.83716 -37.18932 -36.53144 -34.68564 -34.66298 -32.11562 -31.92087 -28.58139 -27.95578 -27.75439 -26.80068 -26.64717 -24.02142 -23.64716 -21.17328 -20.01901 -19.72522 -18.54923 -18.43572 -18.09873 -17.74174 -17.13741 -16.95676 -16.92125 -16.25186 -16.13240 -15.98673 -15.30603 -15.11774 -14.90384 -14.69999 -14.52774 -14.24169 -14.03471 -13.89149 -13.46990 -13.43138 -13.38602 -13.22282 -13.11194 -12.99848 -12.69318 -12.54482 -12.32135 -12.24749 -12.05251 -11.72712 -11.48957 -11.26278 -11.04028 -10.94272 -10.77067 -10.65245 -9.98552 -9.66708 -9.65632 -8.81365 -8.41051 -6.20656 -0.10793 0.25853 1.27938 1.34446 1.44196 1.59121 1.79535 1.92072 2.22621 2.74405 2.91810 3.19076 3.39107 3.44316 3.58645 3.73835 3.75695 3.95579 3.98785 4.17064 4.27154 4.34396 4.37064 4.41805 4.50396 4.55466 4.59903 4.64433 4.66729 4.72850 4.76575 4.90458 4.92327 4.93491 5.00597 5.16373 5.23921 5.29365 5.33057 5.37323 5.50087 5.52246 5.88363 6.14395 6.27710 6.89718 6.92674 6.99611 7.07912 8.66106 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002817 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.214813 B = 9935.541229 C =10742.638705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.598 5.598 3 C 0.133 3.867 4 C -0.073 4.073 5 C -0.120 4.120 6 C 0.098 3.902 7 O -0.572 6.572 8 C 0.097 3.903 9 O -0.586 6.586 10 C 0.559 3.441 11 O -0.571 6.571 12 C -0.153 4.153 13 C -0.074 4.074 14 C -0.121 4.121 15 C -0.066 4.066 16 C -0.128 4.128 17 S -0.094 6.094 18 C -0.535 4.535 19 H 0.064 0.936 20 C 0.020 3.980 21 N -0.905 5.905 22 Si 0.991 3.009 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.272 1.272 26 C -0.048 4.048 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.397 0.603 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.396 0.604 41 H 0.179 0.821 42 H 0.175 0.825 43 H 0.134 0.866 44 H 0.274 0.726 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.653 26.416 3.427 29.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.329 5.329 3 C 0.010 3.990 4 C -0.075 4.075 5 C -0.178 4.178 6 C 0.020 3.980 7 O -0.380 6.380 8 C 0.018 3.982 9 O -0.394 6.394 10 C 0.348 3.652 11 O -0.451 6.451 12 C -0.158 4.158 13 C -0.092 4.092 14 C -0.140 4.140 15 C -0.087 4.087 16 C -0.239 4.239 17 S 0.141 5.859 18 C -0.682 4.682 19 H 0.082 0.918 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.813 3.187 23 H -0.192 1.192 24 H -0.188 1.188 25 H -0.197 1.197 26 C -0.070 4.070 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.247 0.753 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.246 0.754 41 H 0.196 0.804 42 H 0.193 0.807 43 H 0.152 0.848 44 H 0.083 0.917 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.988 25.233 2.467 27.632 hybrid contribution 1.408 0.018 0.981 1.716 sum -9.580 25.251 3.448 27.226 Atomic orbital electron populations 1.22638 0.77193 1.04758 1.03801 1.47611 1.08379 1.04426 1.72486 1.21419 0.97767 0.84659 0.95160 1.20991 0.95126 0.95038 0.96297 1.21596 0.99287 0.96945 0.99972 1.21912 0.90594 0.90937 0.94566 1.86357 1.34462 1.59873 1.57333 1.21937 0.97997 0.94633 0.83587 1.86400 1.80426 1.45735 1.26855 1.18481 0.86592 0.84366 0.75742 1.90764 1.15676 1.87679 1.50943 1.19942 0.98459 0.92742 1.04671 1.22175 0.91477 1.00145 0.95429 1.21565 1.01715 0.90948 0.99749 1.22052 0.93576 1.00118 0.92904 1.22461 0.99301 0.97996 1.04130 1.83420 1.52959 1.21397 1.28162 1.23078 1.26594 1.17433 1.01122 0.91773 1.25986 0.98078 0.95550 0.98886 1.70108 1.39441 1.20257 1.24359 0.85017 0.77561 0.78441 0.77693 1.19246 1.18840 1.19709 1.21539 0.97373 0.91592 0.96489 0.89394 0.88394 0.90413 0.86817 0.91506 0.94923 0.92774 0.93490 0.93861 0.93456 0.75338 0.91312 0.93711 0.75431 0.80433 0.80715 0.84807 0.91675 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 7.71 127.77 0.98 1.73 16 2 N -0.60 -12.97 2.40 -850.16 -2.04 -15.01 16 3 C 0.13 2.61 4.45 86.38 0.38 3.00 16 4 C -0.07 -1.48 0.51 -52.18 -0.03 -1.50 16 5 C -0.12 -3.35 6.92 71.98 0.50 -2.86 16 6 C 0.10 1.62 4.92 71.98 0.35 1.97 16 7 O -0.57 -6.46 11.28 -148.98 -1.68 -8.15 16 8 C 0.10 1.62 5.77 71.98 0.42 2.04 16 9 O -0.59 -10.06 12.31 -148.98 -1.83 -11.89 16 10 C 0.56 17.90 5.99 86.79 0.52 18.42 16 11 O -0.57 -23.15 14.12 -3.86 -0.05 -23.21 16 12 C -0.15 -5.09 5.31 -20.10 -0.11 -5.19 16 13 C -0.07 -1.76 7.61 22.57 0.17 -1.59 16 14 C -0.12 -2.93 10.02 22.21 0.22 -2.71 16 15 C -0.07 -2.29 9.79 22.48 0.22 -2.07 16 16 C -0.13 -5.70 5.45 22.65 0.12 -5.58 16 17 S -0.09 -5.21 21.41 -56.49 -1.21 -6.42 16 18 C -0.54 -32.09 9.46 67.94 0.64 -31.44 16 19 H 0.06 3.86 7.79 -2.91 -0.02 3.83 16 20 C 0.02 1.18 5.49 84.84 0.47 1.65 16 21 N -0.91 -55.24 13.22 21.64 0.29 -54.96 16 22 Si 0.99 45.68 29.55 68.60 2.03 47.70 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C -0.05 -2.07 9.35 22.70 0.21 -1.86 16 27 H 0.09 0.70 6.77 -2.39 -0.02 0.68 16 28 H 0.10 0.93 5.24 -2.39 -0.01 0.92 16 29 H 0.08 1.13 5.82 -2.39 -0.01 1.11 16 30 H 0.11 1.64 7.61 -2.38 -0.02 1.63 16 31 H 0.07 1.58 7.50 -2.39 -0.02 1.56 16 32 H 0.03 1.04 6.06 -2.39 -0.01 1.02 16 33 H 0.05 1.48 7.68 -2.39 -0.02 1.47 16 34 H 0.05 1.48 7.63 -2.39 -0.02 1.46 16 35 H 0.04 0.81 7.68 -2.38 -0.02 0.80 16 36 H 0.05 0.80 5.97 -2.39 -0.01 0.78 16 37 H 0.40 1.27 9.12 -74.05 -0.68 0.60 16 38 H 0.07 0.96 7.68 -2.38 -0.02 0.94 16 39 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.40 3.17 9.12 -74.06 -0.68 2.49 16 41 H 0.18 2.55 4.91 -2.91 -0.01 2.54 16 42 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 43 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.10 4.77 7.93 -2.91 -0.02 4.75 16 Total: -1.00 -82.76 371.46 0.27 -82.49 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -0.31 Total: 15.43 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 5.08 Total: -26.00 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -1.75 Total: -69.96 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -3.57 Total: -43.25 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.21 Total: -6.42 kcal Total: -82.76 0.27 -82.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182929689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.739 kcal (2) G-P(sol) polarization free energy of solvation -82.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds