Wall clock time and date at job start Tue Mar 31 2020 22:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 H 1.09005 * 109.47393 * 54.99909 * 3 2 1 5 5 C 1.50704 * 109.47076 * 174.99988 * 3 2 1 6 6 H 1.07994 * 120.00168 * 119.99913 * 5 3 2 7 7 C 1.37874 * 119.99606 * 300.00005 * 5 3 2 8 8 N 1.31511 * 120.00354 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99835 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46700 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47125 * 119.99827 * 9 7 5 12 12 H 1.48494 * 109.47431 * 240.00235 * 9 7 5 13 13 N 1.46501 * 109.47349 * 294.99887 * 3 2 1 14 14 C 1.34780 * 119.99572 * 85.00323 * 13 3 2 15 15 O 1.21548 * 120.00492 * 359.97438 * 14 13 3 16 16 C 1.47851 * 119.99404 * 180.02562 * 14 13 3 17 17 C 1.39576 * 120.13897 * 179.97438 * 16 14 13 18 18 C 1.37956 * 119.84932 * 179.71861 * 17 16 14 19 19 C 1.38363 * 120.14702 * 0.28830 * 18 17 16 20 20 S 1.76200 * 119.85445 * 180.02562 * 19 18 17 21 21 O 1.42098 * 104.27592 * 206.07041 * 20 19 18 22 22 O 1.42105 * 104.27838 * 333.92258 * 20 19 18 23 23 C 1.81396 * 104.45125 * 89.99506 * 20 19 18 24 24 C 1.53008 * 109.47058 * 59.99847 * 23 20 19 25 25 C 1.52998 * 109.47206 * 179.97438 * 23 20 19 26 26 C 1.38359 * 120.29270 * 359.97438 * 19 18 17 27 27 C 1.37965 * 120.14128 * 359.97438 * 26 19 18 28 28 H 1.09000 * 109.47295 * 300.00088 * 1 2 3 29 29 H 1.09000 * 109.47219 * 59.99452 * 1 2 3 30 30 H 1.08996 * 109.47256 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46719 * 240.00069 * 2 1 3 32 32 H 1.08995 * 109.46776 * 119.99746 * 2 1 3 33 33 H 0.97009 * 119.99968 * 180.02562 * 8 7 5 34 34 H 0.96996 * 119.99915 * 264.99894 * 13 3 2 35 35 H 1.08002 * 120.07892 * 0.02562 * 17 16 14 36 36 H 1.08008 * 119.92898 * 180.25846 * 18 17 16 37 37 H 1.08996 * 109.47337 * 300.00080 * 23 20 19 38 38 H 1.08999 * 109.47051 * 300.00443 * 24 23 20 39 39 H 1.09005 * 109.46978 * 60.00157 * 24 23 20 40 40 H 1.08997 * 109.47164 * 179.97438 * 24 23 20 41 41 H 1.08997 * 109.47028 * 60.00182 * 25 23 20 42 42 H 1.09006 * 109.47130 * 180.02562 * 25 23 20 43 43 H 1.09005 * 109.47306 * 300.00135 * 25 23 20 44 44 H 1.07994 * 119.92823 * 180.02562 * 26 19 18 45 45 H 1.07995 * 120.06782 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8800 1.3812 10 1 6.5987 1.5453 0.1937 11 1 6.3999 1.6157 2.6092 12 1 6.4962 -0.5190 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6319 -0.4323 16 6 0.0438 3.3250 -2.6304 17 6 -1.2163 3.9126 -2.7531 18 6 -1.5730 4.5324 -3.9328 19 6 -0.6870 4.5672 -4.9950 20 16 -1.1504 5.3615 -6.4980 21 8 -0.3691 4.7132 -7.4923 22 8 -2.5691 5.2816 -6.5137 23 6 -0.6120 7.0807 -6.2861 24 6 0.9014 7.1174 -6.0636 25 6 -0.9620 7.8831 -7.5408 26 6 0.5616 3.9818 -4.8819 27 6 0.9311 3.3597 -3.7072 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0612 2.9499 34 1 2.2720 2.1232 -1.9977 35 1 -1.9086 3.8865 -1.9246 36 1 -2.5461 4.9912 -4.0277 37 1 -1.1166 7.5158 -5.4236 38 1 1.1512 6.5456 -5.1699 39 1 1.4062 6.6823 -6.9262 40 1 1.2250 8.1505 -5.9367 41 1 -2.0400 7.8570 -7.6998 42 1 -0.6381 8.9161 -7.4137 43 1 -0.4570 7.4479 -8.4032 44 1 1.2486 4.0128 -5.7145 45 1 1.9061 2.9036 -3.6200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183801090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:54 Heat of formation + Delta-G solvation = -90.978040 kcal Electronic energy + Delta-G solvation = -27274.185805 eV Core-core repulsion = 23383.791036 eV Total energy + Delta-G solvation = -3890.394770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.02018 -38.25611 -37.41134 -36.20938 -35.48615 -35.19809 -32.77447 -31.79046 -31.23756 -30.52886 -27.86818 -27.11181 -24.49758 -23.13675 -23.04391 -22.59529 -20.61677 -19.57940 -19.12492 -18.38718 -17.61391 -16.94770 -16.29827 -15.95794 -15.66371 -15.13389 -14.93286 -14.79104 -14.63258 -14.29487 -13.86588 -13.81781 -13.65062 -13.59265 -13.05186 -12.90866 -12.81796 -12.73468 -12.35024 -12.24230 -12.08401 -11.93629 -11.90102 -11.61466 -11.38313 -11.33182 -11.14499 -11.03477 -10.91734 -10.63051 -10.38268 -10.27390 -9.72642 -9.42615 -9.29412 -9.23113 -9.12852 -8.58629 -7.97549 -6.19941 -4.29997 -0.28551 0.38008 1.13486 2.54522 2.86505 3.18753 3.26907 3.28961 3.54518 3.72247 3.82631 3.92127 4.05225 4.22117 4.29273 4.57294 4.59656 4.68286 4.97338 5.00871 5.06909 5.11681 5.14204 5.15351 5.27899 5.30264 5.44045 5.47440 5.61103 5.72015 5.86452 5.95314 6.20028 6.32988 6.38861 6.58367 6.59281 6.96721 7.11179 7.24201 7.31103 7.52830 7.62807 7.80084 8.08915 8.48830 8.66229 8.92914 9.37311 10.85408 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002585 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.548007 B =10829.592809 C =11706.549112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.696 5.696 14 C 0.533 3.467 15 O -0.536 6.536 16 C -0.062 4.062 17 C -0.088 4.088 18 C -0.033 4.033 19 C -0.650 4.650 20 S 2.495 3.505 21 O -0.933 6.933 22 O -0.938 6.938 23 C -0.569 4.569 24 C -0.146 4.146 25 C -0.146 4.146 26 C -0.030 4.030 27 C -0.112 4.112 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.024 0.976 31 H 0.032 0.968 32 H 0.101 0.899 33 H 0.265 0.735 34 H 0.389 0.611 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.145 0.855 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 13.610 -17.294 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.343 5.343 14 C 0.318 3.682 15 O -0.415 6.415 16 C -0.065 4.065 17 C -0.107 4.107 18 C -0.052 4.052 19 C -0.737 4.737 20 S 2.675 3.325 21 O -0.931 6.931 22 O -0.935 6.935 23 C -0.679 4.679 24 C -0.204 4.204 25 C -0.204 4.204 26 C -0.049 4.049 27 C -0.131 4.131 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.223 0.777 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.163 0.837 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.133 13.070 -17.090 22.667 hybrid contribution 1.665 0.154 0.652 1.794 sum -5.468 13.225 -16.439 21.795 Atomic orbital electron populations 1.21851 0.98308 0.98254 1.01176 1.21946 0.92652 0.99595 1.02490 1.18891 0.94472 0.89298 0.80584 0.93020 1.21230 0.90486 1.39296 1.06445 0.91981 1.24885 0.98725 0.94683 0.95332 1.69899 1.35143 1.37421 1.09327 0.86386 0.84678 0.77845 0.78150 1.19714 1.20852 1.20810 1.46527 1.14116 1.54882 1.18809 1.18164 0.83370 0.79935 0.86753 1.90764 1.51340 1.59733 1.39643 1.20795 0.94793 0.96176 0.94785 1.21441 0.95719 0.95587 0.97984 1.20902 0.97992 0.95192 0.91110 1.30538 1.04068 1.18239 1.20856 1.05670 0.74914 0.77270 0.74636 1.93560 1.71612 1.71960 1.55930 1.93568 1.27719 1.86038 1.86152 1.30014 1.07675 1.22009 1.08178 1.21724 0.89859 1.05104 1.03720 1.21688 1.02871 1.01713 0.94148 1.20861 0.93696 0.92804 0.97547 1.21552 0.99993 0.99015 0.92576 0.93068 0.94406 0.95658 0.94902 0.88079 0.92508 0.77739 0.83618 0.83795 0.84138 0.90695 0.90334 0.90108 0.90797 0.89646 0.90715 0.83714 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.52 2.24 -69.08 -0.15 6.36 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.64 8.73 -34.44 -0.30 -13.94 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.41 16 9 Si 0.90 20.04 29.54 -169.99 -5.02 15.01 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 13 N -0.70 -13.80 4.97 -55.87 -0.28 -14.07 16 14 C 0.53 10.24 6.34 -12.33 -0.08 10.17 16 15 O -0.54 -11.98 13.48 5.32 0.07 -11.91 16 16 C -0.06 -0.94 5.87 -104.97 -0.62 -1.56 16 17 C -0.09 -1.19 9.60 -39.19 -0.38 -1.57 16 18 C -0.03 -0.38 9.45 -39.64 -0.37 -0.75 16 19 C -0.65 -7.02 5.07 -39.49 -0.20 -7.22 16 20 S 2.49 23.93 4.65 -107.50 -0.50 23.43 16 21 O -0.93 -11.16 17.00 -57.54 -0.98 -12.14 16 22 O -0.94 -11.52 17.11 -57.54 -0.98 -12.50 16 23 C -0.57 -3.39 3.44 -26.73 -0.09 -3.49 16 24 C -0.15 -0.81 8.97 37.16 0.33 -0.48 16 25 C -0.15 -0.73 9.20 37.16 0.34 -0.39 16 26 C -0.03 -0.33 8.50 -39.64 -0.34 -0.66 16 27 C -0.11 -1.39 9.54 -39.18 -0.37 -1.77 16 28 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 29 H 0.04 0.81 5.64 -51.93 -0.29 0.51 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.39 6.59 6.57 -40.82 -0.27 6.33 16 35 H 0.15 1.96 7.65 -52.49 -0.40 1.55 16 36 H 0.14 1.31 7.56 -52.48 -0.40 0.91 16 37 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.42 6.70 -51.93 -0.35 0.07 16 39 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.15 1.24 7.56 -52.49 -0.40 0.84 16 45 H 0.14 1.50 6.41 -52.49 -0.34 1.16 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -33.32 376.18 -10.02 -43.34 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.47 Total: 6.11 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.15 Total: -19.54 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.35 Total: -37.48 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -1.89 Total: -36.55 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 23.93 SS G_CDS: -0.50 Total: 23.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.32 -10.02 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183801090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.637 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds