Wall clock time and date at job start Tue Mar 31 2020 22:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 H 1.09005 * 109.47393 * 54.99909 * 3 2 1 5 5 C 1.50704 * 109.47076 * 174.99988 * 3 2 1 6 6 H 1.07994 * 120.00168 * 119.99913 * 5 3 2 7 7 C 1.37874 * 119.99606 * 300.00005 * 5 3 2 8 8 N 1.31511 * 120.00354 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99835 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46700 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47125 * 119.99827 * 9 7 5 12 12 H 1.48494 * 109.47431 * 240.00235 * 9 7 5 13 13 N 1.46501 * 109.47349 * 294.99887 * 3 2 1 14 14 C 1.34780 * 119.99572 * 85.00323 * 13 3 2 15 15 O 1.21548 * 120.00492 * 359.97438 * 14 13 3 16 16 C 1.47851 * 119.99404 * 180.02562 * 14 13 3 17 17 C 1.39576 * 120.13897 * 179.97438 * 16 14 13 18 18 C 1.37956 * 119.84932 * 179.71861 * 17 16 14 19 19 C 1.38363 * 120.14702 * 0.28830 * 18 17 16 20 20 S 1.76200 * 119.85445 * 180.02562 * 19 18 17 21 21 O 1.42098 * 104.27592 * 206.07041 * 20 19 18 22 22 O 1.42105 * 104.27838 * 333.92258 * 20 19 18 23 23 C 1.81396 * 104.45125 * 89.99506 * 20 19 18 24 24 C 1.53008 * 109.47058 * 59.99847 * 23 20 19 25 25 C 1.52998 * 109.47206 * 179.97438 * 23 20 19 26 26 C 1.38359 * 120.29270 * 359.97438 * 19 18 17 27 27 C 1.37965 * 120.14128 * 359.97438 * 26 19 18 28 28 H 1.09000 * 109.47295 * 300.00088 * 1 2 3 29 29 H 1.09000 * 109.47219 * 59.99452 * 1 2 3 30 30 H 1.08996 * 109.47256 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46719 * 240.00069 * 2 1 3 32 32 H 1.08995 * 109.46776 * 119.99746 * 2 1 3 33 33 H 0.97009 * 119.99968 * 180.02562 * 8 7 5 34 34 H 0.96996 * 119.99915 * 264.99894 * 13 3 2 35 35 H 1.08002 * 120.07892 * 0.02562 * 17 16 14 36 36 H 1.08008 * 119.92898 * 180.25846 * 18 17 16 37 37 H 1.08996 * 109.47337 * 300.00080 * 23 20 19 38 38 H 1.08999 * 109.47051 * 300.00443 * 24 23 20 39 39 H 1.09005 * 109.46978 * 60.00157 * 24 23 20 40 40 H 1.08997 * 109.47164 * 179.97438 * 24 23 20 41 41 H 1.08997 * 109.47028 * 60.00182 * 25 23 20 42 42 H 1.09006 * 109.47130 * 180.02562 * 25 23 20 43 43 H 1.09005 * 109.47306 * 300.00135 * 25 23 20 44 44 H 1.07994 * 119.92823 * 180.02562 * 26 19 18 45 45 H 1.07995 * 120.06782 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8800 1.3812 10 1 6.5987 1.5453 0.1937 11 1 6.3999 1.6157 2.6092 12 1 6.4962 -0.5190 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6319 -0.4323 16 6 0.0438 3.3250 -2.6304 17 6 -1.2163 3.9126 -2.7531 18 6 -1.5730 4.5324 -3.9328 19 6 -0.6870 4.5672 -4.9950 20 16 -1.1504 5.3615 -6.4980 21 8 -0.3691 4.7132 -7.4923 22 8 -2.5691 5.2816 -6.5137 23 6 -0.6120 7.0807 -6.2861 24 6 0.9014 7.1174 -6.0636 25 6 -0.9620 7.8831 -7.5408 26 6 0.5616 3.9818 -4.8819 27 6 0.9311 3.3597 -3.7072 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0612 2.9499 34 1 2.2720 2.1232 -1.9977 35 1 -1.9086 3.8865 -1.9246 36 1 -2.5461 4.9912 -4.0277 37 1 -1.1166 7.5158 -5.4236 38 1 1.1512 6.5456 -5.1699 39 1 1.4062 6.6823 -6.9262 40 1 1.2250 8.1505 -5.9367 41 1 -2.0400 7.8570 -7.6998 42 1 -0.6381 8.9161 -7.4137 43 1 -0.4570 7.4479 -8.4032 44 1 1.2486 4.0128 -5.7145 45 1 1.9061 2.9036 -3.6200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183801090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:53 Heat of formation + Delta-G solvation = -113.723268 kcal Electronic energy + Delta-G solvation = -27275.172112 eV Core-core repulsion = 23383.791036 eV Total energy + Delta-G solvation = -3891.381077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.33845 -39.54095 -38.24089 -37.05485 -36.99268 -35.93952 -34.49386 -33.35231 -32.27078 -31.94529 -29.01348 -28.23071 -25.82506 -24.75589 -23.86787 -23.41131 -22.15896 -21.27839 -19.96894 -19.61085 -18.73075 -17.80802 -17.67067 -17.35131 -16.85636 -16.43799 -16.35800 -15.86692 -15.78729 -15.35375 -15.15375 -14.66752 -14.61049 -14.41546 -14.16220 -14.11203 -14.08137 -13.66996 -13.46108 -13.23162 -13.20431 -13.16749 -13.05112 -12.89894 -12.72476 -12.36551 -12.32925 -12.31146 -12.19499 -12.09091 -12.01423 -11.63431 -11.25943 -11.07618 -10.88596 -10.56316 -10.48280 -10.17614 -9.72531 -8.18006 -6.35521 -1.02344 -0.63888 0.18304 1.44022 1.45568 1.56865 1.63449 1.82055 2.28217 2.50146 2.57765 2.90547 3.05007 3.12152 3.57042 3.60162 3.69950 3.78524 3.83919 4.17935 4.21132 4.30084 4.44663 4.48135 4.52991 4.65207 4.69838 4.70483 4.76167 4.82490 4.90027 4.91722 4.92446 5.03595 5.15495 5.17130 5.24946 5.26125 5.38798 5.48414 5.56810 5.63154 5.75296 5.86919 6.12775 6.71113 6.84616 7.28112 7.43801 8.87673 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002585 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.548007 B =10829.592809 C =11706.549112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.280 1.280 13 N -0.694 5.694 14 C 0.533 3.467 15 O -0.576 6.576 16 C -0.087 4.087 17 C -0.096 4.096 18 C -0.032 4.032 19 C -0.643 4.643 20 S 2.494 3.506 21 O -0.960 6.960 22 O -0.969 6.969 23 C -0.540 4.540 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.028 4.028 27 C -0.108 4.108 28 H 0.028 0.972 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.172 0.828 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 15.459 -19.855 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.182 1.182 11 H -0.211 1.211 12 H -0.206 1.206 13 N -0.342 5.342 14 C 0.320 3.680 15 O -0.458 6.458 16 C -0.090 4.090 17 C -0.116 4.116 18 C -0.051 4.051 19 C -0.729 4.729 20 S 2.677 3.323 21 O -0.957 6.957 22 O -0.966 6.966 23 C -0.654 4.654 24 C -0.215 4.215 25 C -0.216 4.216 26 C -0.047 4.047 27 C -0.127 4.127 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.156 0.844 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.189 0.811 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.019 14.881 -19.685 25.400 hybrid contribution 1.258 -0.285 1.353 1.870 sum -4.761 14.596 -18.332 23.911 Atomic orbital electron populations 1.21693 0.97110 0.99243 1.00185 1.21803 0.93643 0.99127 1.01517 1.18463 0.93969 0.89184 0.80985 0.97950 1.21576 0.91129 1.39043 1.06811 0.90789 1.25762 1.03314 0.94316 0.95012 1.70050 1.37051 1.38281 1.09893 0.85321 0.79092 0.77796 0.78272 1.18242 1.21090 1.20580 1.46243 1.15010 1.55059 1.17925 1.18746 0.82399 0.79032 0.87786 1.90736 1.52334 1.61138 1.41558 1.20448 0.96403 0.98485 0.93676 1.21476 0.95195 0.96049 0.98834 1.21110 0.99040 0.94646 0.90270 1.30893 1.03704 1.17274 1.20998 1.05789 0.73989 0.78898 0.73589 1.93522 1.71733 1.73999 1.56487 1.93528 1.29617 1.87252 1.86221 1.29820 1.08337 1.17273 1.09935 1.21889 0.89158 1.06444 1.03962 1.21887 1.03419 1.02734 0.93573 1.21177 0.94176 0.91753 0.97552 1.21710 1.00077 0.98732 0.92186 0.95314 0.94096 0.93526 0.93964 0.90713 0.92559 0.75949 0.84371 0.81647 0.81732 0.90742 0.89968 0.88161 0.90428 0.87324 0.90460 0.81093 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.51 71.98 0.61 -5.03 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.78 16 3 C 0.28 13.89 2.24 44.25 0.10 13.99 16 4 H 0.00 0.16 7.58 -2.38 -0.02 0.14 16 5 C -0.55 -28.08 8.73 25.60 0.22 -27.86 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.91 -51.36 11.29 21.45 0.24 -51.11 16 9 Si 0.97 41.00 29.54 68.60 2.03 43.02 16 10 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.69 -27.95 4.97 -448.96 -2.23 -30.18 16 14 C 0.53 21.06 6.34 86.79 0.55 21.62 16 15 O -0.58 -27.08 13.48 -3.87 -0.05 -27.13 16 16 C -0.09 -2.62 5.87 -20.09 -0.12 -2.74 16 17 C -0.10 -2.59 9.60 22.53 0.22 -2.38 16 18 C -0.03 -0.69 9.45 22.23 0.21 -0.48 16 19 C -0.64 -12.58 5.07 22.33 0.11 -12.46 16 20 S 2.49 42.41 4.65 -56.49 -0.26 42.15 16 21 O -0.96 -21.14 17.00 -127.65 -2.17 -23.31 16 22 O -0.97 -22.31 17.11 -127.65 -2.18 -24.50 16 23 C -0.54 -4.51 3.44 30.60 0.11 -4.41 16 24 C -0.16 -1.14 8.97 71.98 0.65 -0.50 16 25 C -0.16 -1.02 9.20 71.98 0.66 -0.36 16 26 C -0.03 -0.55 8.50 22.23 0.19 -0.36 16 27 C -0.11 -2.52 9.54 22.53 0.21 -2.30 16 28 H 0.03 1.38 7.84 -2.39 -0.02 1.37 16 29 H 0.04 1.79 5.64 -2.39 -0.01 1.78 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 4.07 5.95 -2.39 -0.01 4.06 16 33 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 34 H 0.40 13.51 6.57 -92.71 -0.61 12.90 16 35 H 0.14 3.86 7.65 -2.91 -0.02 3.84 16 36 H 0.17 2.73 7.56 -2.91 -0.02 2.71 16 37 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.58 6.70 -2.39 -0.02 0.56 16 39 H 0.08 0.57 8.11 -2.38 -0.02 0.55 16 40 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 43 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.17 2.39 7.56 -2.91 -0.02 2.37 16 45 H 0.15 3.02 6.41 -2.91 -0.02 3.01 16 Total: -1.00 -74.64 376.18 0.10 -74.54 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.40 Total: 24.25 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 4.34 Total: -27.73 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.99 Total: -81.30 kcal Atomic # 8 Polarization: -70.53 SS G_CDS: -4.41 Total: -74.93 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 16 Polarization: 42.41 SS G_CDS: -0.26 Total: 42.15 kcal Total: -74.64 0.10 -74.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183801090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.184 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds