Wall clock time and date at job start Tue Mar 31 2020 22:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 H 1.08990 * 109.47164 * 304.89871 * 3 2 1 5 5 C 1.50697 * 109.46666 * 184.89947 * 3 2 1 6 6 H 1.08010 * 120.00015 * 245.45034 * 5 3 2 7 7 C 1.37874 * 120.00111 * 65.45470 * 5 3 2 8 8 N 1.31505 * 119.99970 * 9.46952 * 7 5 3 9 9 Si 1.86805 * 120.00100 * 189.46616 * 7 5 3 10 10 H 1.48498 * 109.46940 * 84.99429 * 9 7 5 11 11 H 1.48499 * 109.47399 * 204.99402 * 9 7 5 12 12 H 1.48504 * 109.46920 * 324.99664 * 9 7 5 13 13 N 1.46503 * 109.47131 * 64.90329 * 3 2 1 14 14 C 1.34776 * 119.99782 * 274.99928 * 13 3 2 15 15 O 1.21552 * 119.99804 * 359.97438 * 14 13 3 16 16 C 1.47840 * 120.00026 * 180.02562 * 14 13 3 17 17 C 1.39581 * 120.14392 * 179.97438 * 16 14 13 18 18 C 1.37966 * 119.84982 * 180.02562 * 17 16 14 19 19 C 1.38352 * 120.14521 * 359.97438 * 18 17 16 20 20 S 1.76201 * 119.85220 * 179.97438 * 19 18 17 21 21 O 1.42096 * 104.28188 * 206.07228 * 20 19 18 22 22 O 1.42101 * 104.27824 * 333.93707 * 20 19 18 23 23 C 1.81400 * 104.44692 * 90.00356 * 20 19 18 24 24 C 1.52997 * 109.47306 * 60.00097 * 23 20 19 25 25 C 1.53001 * 109.47132 * 179.97438 * 23 20 19 26 26 C 1.38359 * 120.29740 * 0.28294 * 19 18 17 27 27 C 1.37964 * 120.14214 * 359.43922 * 26 19 18 28 28 H 1.09000 * 109.47383 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47413 * 299.99807 * 1 2 3 30 30 H 1.08997 * 109.47120 * 60.00278 * 1 2 3 31 31 H 1.08999 * 109.47148 * 239.99723 * 2 1 3 32 32 H 1.09000 * 109.46817 * 120.00122 * 2 1 3 33 33 H 0.97007 * 120.00239 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00397 * 94.99386 * 13 3 2 35 35 H 1.08000 * 120.07371 * 0.02562 * 17 16 14 36 36 H 1.07998 * 119.92190 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47423 * 300.00046 * 23 20 19 38 38 H 1.09001 * 109.46969 * 300.00110 * 24 23 20 39 39 H 1.08995 * 109.47258 * 59.99915 * 24 23 20 40 40 H 1.09001 * 109.47798 * 179.97438 * 24 23 20 41 41 H 1.08998 * 109.47425 * 60.00185 * 25 23 20 42 42 H 1.09001 * 109.46998 * 179.97438 * 25 23 20 43 43 H 1.08999 * 109.47541 * 299.99761 * 25 23 20 44 44 H 1.07998 * 119.92741 * 179.70500 * 26 19 18 45 45 H 1.07991 * 120.07448 * 180.26024 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9810 -0.8428 5 6 3.5420 1.4442 -0.1213 6 1 4.1493 1.8090 0.6940 7 6 4.1411 0.9801 -1.2731 8 7 3.4097 0.7115 -2.3325 9 14 5.9919 0.7328 -1.3289 10 1 6.3289 -0.6067 -0.7834 11 1 6.4619 0.8275 -2.7344 12 1 6.6561 1.7809 -0.5131 13 7 1.6504 2.0982 1.2508 14 6 0.4328 2.6651 1.3637 15 8 -0.3417 2.6328 0.4275 16 6 0.0399 3.3273 2.6257 17 6 -1.2201 3.9158 2.7457 18 6 -1.5803 4.5326 3.9260 19 6 -0.6961 4.5681 4.9895 20 16 -1.1639 5.3585 6.4932 21 8 0.0684 5.7569 7.0779 22 8 -2.1318 6.3205 6.0970 23 6 -1.9380 4.0434 7.4739 24 6 -0.9263 2.9202 7.7098 25 6 -2.3920 4.6111 8.8202 26 6 0.5564 3.9913 4.8754 27 6 0.9270 3.3663 3.7026 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8311 0.3846 -3.1428 34 1 2.2686 2.1243 1.9979 35 1 -1.9114 3.8885 1.9164 36 1 -2.5548 4.9888 4.0200 37 1 -2.8002 3.6487 6.9363 38 1 -0.6024 2.5156 6.7508 39 1 -0.0641 3.3148 8.2474 40 1 -1.3912 2.1301 8.2995 41 1 -3.1127 5.4114 8.6526 42 1 -2.8576 3.8209 9.4093 43 1 -1.5296 5.0054 9.3577 44 1 1.2437 4.0266 5.7077 45 1 1.9033 2.9128 3.6162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183801106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:57 Heat of formation + Delta-G solvation = -115.439191 kcal Electronic energy + Delta-G solvation = -27276.879435 eV Core-core repulsion = 23385.423950 eV Total energy + Delta-G solvation = -3891.455485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33653 -39.53795 -38.24070 -37.05008 -36.97516 -35.93562 -34.47660 -33.41297 -32.27357 -31.95171 -29.01392 -28.22675 -25.82373 -24.74666 -23.86613 -23.40999 -22.18779 -21.29041 -19.96618 -19.61265 -18.72901 -17.80464 -17.65548 -17.36950 -16.83739 -16.45213 -16.35276 -15.87088 -15.76354 -15.38147 -15.13774 -14.67183 -14.61645 -14.35044 -14.28026 -14.14106 -13.96129 -13.67905 -13.44446 -13.30200 -13.22890 -13.16606 -13.04850 -12.94323 -12.63791 -12.35923 -12.32739 -12.30806 -12.23249 -12.11773 -12.02316 -11.65692 -11.25190 -11.13294 -10.86418 -10.55682 -10.48081 -10.17336 -9.73703 -8.21755 -6.35051 -1.02029 -0.63747 0.18540 1.44469 1.44974 1.54524 1.63634 1.82232 2.28277 2.49947 2.57941 2.90848 3.05267 3.10494 3.57446 3.60520 3.70275 3.78910 3.84229 4.18234 4.21616 4.30338 4.43192 4.48212 4.50386 4.65818 4.67747 4.70128 4.76925 4.82792 4.90332 4.92153 4.92686 5.03354 5.15358 5.17511 5.23563 5.26807 5.37714 5.45406 5.56885 5.63300 5.71711 5.85689 6.02799 6.72231 6.84613 7.28106 7.43578 8.86991 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.002522 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.725179 B =11100.300209 C =11562.792170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.275 3.725 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.074 0.926 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.693 5.693 14 C 0.533 3.467 15 O -0.576 6.576 16 C -0.087 4.087 17 C -0.096 4.096 18 C -0.032 4.032 19 C -0.643 4.643 20 S 2.493 3.507 21 O -0.961 6.961 22 O -0.970 6.970 23 C -0.539 4.539 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.028 4.028 27 C -0.107 4.107 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.026 0.974 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.172 0.828 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 3.467 24.728 26.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.092 0.908 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.791 3.209 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.342 5.342 14 C 0.320 3.680 15 O -0.458 6.458 16 C -0.090 4.090 17 C -0.116 4.116 18 C -0.051 4.051 19 C -0.729 4.729 20 S 2.676 3.324 21 O -0.958 6.958 22 O -0.967 6.967 23 C -0.653 4.653 24 C -0.214 4.214 25 C -0.216 4.216 26 C -0.047 4.047 27 C -0.127 4.127 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.156 0.844 36 H 0.183 0.817 37 H 0.183 0.817 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.189 0.811 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.400 4.247 24.014 26.512 hybrid contribution 1.062 -0.846 -1.163 1.788 sum -9.338 3.400 22.850 24.918 Atomic orbital electron populations 1.21697 0.96697 0.99525 1.00419 1.21705 0.94077 0.98725 1.00634 1.18468 0.93960 0.89239 0.81156 0.97706 1.21519 0.91153 1.43966 1.02288 0.90827 1.25754 1.03158 0.94734 0.94530 1.70125 1.37843 1.44599 1.02794 0.85441 0.79212 0.79109 0.77099 1.19404 1.21525 1.18827 1.46230 1.15002 1.55081 1.17898 1.18745 0.82434 0.78983 0.87805 1.90741 1.52572 1.61056 1.41399 1.20448 0.96378 0.98584 0.93594 1.21480 0.95344 0.95970 0.98770 1.21106 0.99706 0.93478 0.90778 1.30885 1.03721 1.17304 1.20951 1.05819 0.74708 0.77165 0.74675 1.93522 1.43922 1.81174 1.77181 1.93528 1.62908 1.58178 1.82075 1.29813 1.11795 1.13228 1.10436 1.21886 0.97772 0.97143 1.04626 1.21888 1.03250 1.03497 0.92997 1.21178 0.94004 0.91133 0.98353 1.21713 0.99909 0.98855 0.92197 0.93112 0.93626 0.95487 0.92825 0.92980 0.92566 0.75935 0.84388 0.81667 0.81680 0.90671 0.90022 0.88097 0.90474 0.87267 0.90486 0.81091 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 8.51 71.98 0.61 -4.84 16 2 C -0.11 -5.29 5.50 30.59 0.17 -5.12 16 3 C 0.27 13.75 2.11 44.24 0.09 13.84 16 4 H 0.00 0.30 7.52 -2.39 -0.02 0.28 16 5 C -0.55 -28.47 8.66 25.60 0.22 -28.25 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 1.01 5.16 84.66 0.44 1.45 16 8 N -0.92 -52.38 12.16 21.44 0.26 -52.12 16 9 Si 0.97 41.36 29.55 68.60 2.03 43.38 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 13 N -0.69 -27.83 4.97 -449.00 -2.23 -30.06 16 14 C 0.53 21.03 6.34 86.79 0.55 21.58 16 15 O -0.58 -27.12 13.48 -3.88 -0.05 -27.17 16 16 C -0.09 -2.61 5.87 -20.09 -0.12 -2.73 16 17 C -0.10 -2.59 9.60 22.53 0.22 -2.38 16 18 C -0.03 -0.69 9.45 22.23 0.21 -0.47 16 19 C -0.64 -12.55 5.06 22.33 0.11 -12.43 16 20 S 2.49 42.38 4.65 -56.49 -0.26 42.12 16 21 O -0.96 -21.24 16.99 -127.65 -2.17 -23.41 16 22 O -0.97 -22.45 17.11 -127.65 -2.18 -24.63 16 23 C -0.54 -4.34 3.44 30.59 0.11 -4.23 16 24 C -0.16 -1.06 8.97 71.98 0.65 -0.42 16 25 C -0.16 -0.99 9.20 71.98 0.66 -0.33 16 26 C -0.03 -0.55 8.53 22.23 0.19 -0.36 16 27 C -0.11 -2.50 9.54 22.53 0.21 -2.28 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.90 5.65 -2.39 -0.01 1.88 16 30 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 31 H 0.05 2.82 6.80 -2.39 -0.02 2.80 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 34 H 0.40 13.40 6.56 -92.71 -0.61 12.79 16 35 H 0.14 3.86 7.65 -2.91 -0.02 3.84 16 36 H 0.17 2.73 7.56 -2.91 -0.02 2.71 16 37 H 0.17 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.53 6.72 -2.39 -0.02 0.52 16 39 H 0.08 0.54 8.11 -2.39 -0.02 0.52 16 40 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 44 H 0.17 2.39 7.55 -2.91 -0.02 2.36 16 45 H 0.16 3.00 6.40 -2.92 -0.02 2.98 16 Total: -1.00 -75.90 377.58 0.11 -75.80 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.40 Total: 23.06 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 4.32 Total: -26.97 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -1.97 Total: -82.18 kcal Atomic # 8 Polarization: -70.80 SS G_CDS: -4.41 Total: -75.21 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: 42.38 SS G_CDS: -0.26 Total: 42.12 kcal Total: -75.90 0.11 -75.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183801106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.644 kcal (2) G-P(sol) polarization free energy of solvation -75.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds