Wall clock time and date at job start Tue Mar 31 2020 22:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47153 * 2 1 4 4 H 1.08994 * 109.47466 * 54.99374 * 3 2 1 5 5 C 1.50702 * 109.47012 * 175.00060 * 3 2 1 6 6 H 1.07998 * 119.99629 * 119.99805 * 5 3 2 7 7 C 1.37879 * 119.99481 * 299.99575 * 5 3 2 8 8 N 1.31514 * 119.99532 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 120.00424 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47319 * 89.99945 * 9 7 5 11 11 H 1.48497 * 109.47497 * 210.00310 * 9 7 5 12 12 H 1.48504 * 109.47156 * 330.00092 * 9 7 5 13 13 N 1.46500 * 109.46952 * 294.99546 * 3 2 1 14 14 C 1.34778 * 120.00133 * 84.99975 * 13 3 2 15 15 O 1.21563 * 119.99677 * 0.02562 * 14 13 3 16 16 C 1.47846 * 120.00551 * 179.97438 * 14 13 3 17 17 C 1.39600 * 120.13777 * 353.82058 * 16 14 13 18 18 C 1.37938 * 119.84664 * 179.78840 * 17 16 14 19 19 S 1.76202 * 119.92590 * 180.25062 * 18 17 16 20 20 C 1.81391 * 104.45142 * 270.23569 * 19 18 17 21 21 O 1.42094 * 104.27522 * 26.30937 * 19 18 17 22 22 O 1.42104 * 104.27683 * 154.16428 * 19 18 17 23 23 C 1.38383 * 120.14694 * 0.48877 * 18 17 16 24 24 C 1.38335 * 120.29232 * 359.73937 * 23 18 17 25 25 C 1.50700 * 119.92723 * 180.02562 * 24 23 18 26 26 C 1.37977 * 120.14456 * 0.02888 * 24 23 18 27 27 C 1.50708 * 120.07329 * 179.97438 * 26 24 23 28 28 H 1.09008 * 109.46943 * 60.00176 * 1 2 3 29 29 H 1.09001 * 109.47233 * 300.00901 * 1 2 3 30 30 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46981 * 119.99736 * 2 1 3 32 32 H 1.08994 * 109.47018 * 239.99732 * 2 1 3 33 33 H 0.96995 * 119.99869 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00572 * 265.00080 * 13 3 2 35 35 H 1.07996 * 120.07500 * 0.02562 * 17 16 14 36 36 H 1.08995 * 109.47374 * 59.99871 * 20 19 18 37 37 H 1.08999 * 109.47452 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47540 * 300.00119 * 20 19 18 39 39 H 1.08003 * 119.85208 * 179.72165 * 23 18 17 40 40 H 1.09007 * 109.47472 * 270.02374 * 25 24 23 41 41 H 1.08992 * 109.47225 * 30.02264 * 25 24 23 42 42 H 1.08999 * 109.46920 * 150.02587 * 25 24 23 43 43 H 1.09000 * 109.46795 * 263.51432 * 27 26 24 44 44 H 1.08999 * 109.46767 * 23.51972 * 27 26 24 45 45 H 1.09004 * 109.46608 * 143.51704 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8784 1.2280 8 7 5.4539 0.8804 1.3364 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2635 11 1 3.7935 0.2350 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6643 -1.3672 15 8 -0.3410 2.6326 -0.4322 16 6 0.0443 3.3258 -2.6303 17 6 0.9758 3.4789 -3.6588 18 6 0.6033 4.0930 -4.8364 19 16 1.7755 4.2814 -6.1385 20 6 2.5634 5.8819 -5.8101 21 8 2.6984 3.2203 -5.9353 22 8 0.9832 4.3479 -7.3163 23 6 -0.6874 4.5659 -4.9957 24 6 -1.6139 4.4216 -3.9786 25 6 -3.0174 4.9391 -4.1611 26 6 -1.2557 3.8049 -2.7974 27 6 -2.2661 3.6491 -1.6902 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 5.8769 0.4826 2.1133 34 1 2.2720 2.1231 -1.9979 35 1 1.9845 3.1139 -3.5341 36 1 3.0428 5.8570 -4.8316 37 1 3.3125 6.0822 -6.5762 38 1 1.8088 6.6684 -5.8250 39 1 -0.9726 5.0500 -5.9180 40 1 -3.0714 5.9722 -3.8175 41 1 -3.2875 4.8925 -5.2159 42 1 -3.7085 4.3270 -3.5816 43 1 -2.1468 4.4608 -0.9726 44 1 -3.2719 3.6793 -2.1093 45 1 -2.1103 2.6942 -1.1879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183831927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:47 Heat of formation + Delta-G solvation = -76.597875 kcal Electronic energy + Delta-G solvation = -28086.165498 eV Core-core repulsion = 24196.394299 eV Total energy + Delta-G solvation = -3889.771199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.45004 -38.57420 -37.27331 -36.11919 -35.49994 -33.96325 -32.55227 -32.23834 -31.34518 -29.79502 -28.23758 -27.23786 -26.91357 -23.85753 -22.59847 -21.82840 -20.78188 -19.61422 -18.98674 -18.07168 -16.93843 -16.62156 -16.40364 -15.86329 -15.64518 -15.57729 -15.27918 -14.98285 -14.46658 -14.10966 -13.80075 -13.54789 -13.47108 -13.31476 -13.10869 -12.89327 -12.75820 -12.35230 -12.27993 -12.22848 -12.19049 -12.15199 -11.96624 -11.88174 -11.77979 -11.68828 -11.25965 -11.10952 -10.93213 -10.72983 -10.65727 -9.95645 -9.57059 -9.27299 -9.20795 -9.08900 -8.95658 -8.77898 -8.13582 -6.22926 -4.25890 -0.15775 0.58385 0.85582 2.62946 2.83837 3.21832 3.33575 3.37440 3.62253 3.73672 3.83729 3.92207 4.29245 4.41349 4.50630 4.62590 4.67400 4.77282 4.94085 5.04185 5.10427 5.17151 5.30681 5.36996 5.41335 5.52164 5.68873 5.76065 5.78972 5.81213 5.93136 5.95686 5.99703 6.13761 6.19950 6.42583 6.59522 6.66113 6.68311 6.80089 6.90899 7.20292 7.25479 7.46251 8.08544 8.45578 8.71186 8.82529 9.37070 10.89072 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003832 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.019808 B = 7305.293920 C = 8972.283430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.243 3.757 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.693 5.693 14 C 0.545 3.455 15 O -0.538 6.538 16 C -0.144 4.144 17 C 0.006 3.994 18 C -0.672 4.672 19 S 2.501 3.499 20 C -0.651 4.651 21 O -0.931 6.931 22 O -0.941 6.941 23 C -0.006 4.006 24 C -0.120 4.120 25 C -0.116 4.116 26 C 0.027 3.973 27 C -0.133 4.133 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.268 0.732 34 H 0.395 0.605 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.618 10.894 -13.725 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.140 3.860 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.341 5.341 14 C 0.331 3.669 15 O -0.419 6.419 16 C -0.148 4.148 17 C -0.014 4.014 18 C -0.758 4.758 19 S 2.681 3.319 20 C -0.801 4.801 21 O -0.928 6.928 22 O -0.938 6.938 23 C -0.025 4.025 24 C -0.121 4.121 25 C -0.173 4.173 26 C 0.025 3.975 27 C -0.188 4.188 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.230 0.770 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.808 10.220 -13.573 21.278 hybrid contribution -0.138 0.006 1.052 1.061 sum -12.946 10.226 -12.521 20.711 Atomic orbital electron populations 1.21886 0.96982 0.99144 1.02142 1.22299 0.94367 0.99878 1.01299 1.19209 0.95820 0.88552 0.82449 0.93037 1.21042 0.88488 1.40042 1.07946 0.90068 1.24821 0.94861 0.95079 0.97643 1.69865 1.08680 1.44363 1.29786 0.86904 0.80919 0.80009 0.80892 1.20211 1.22168 1.18482 1.46195 1.14444 1.55212 1.18222 1.18036 0.82897 0.79252 0.86703 1.90689 1.50676 1.60659 1.39828 1.20196 0.94698 1.03945 0.95954 1.21149 0.99711 0.90556 0.89945 1.30404 1.12595 1.16160 1.16677 1.05148 0.75059 0.77292 0.74440 1.30231 1.14227 1.22662 1.12947 1.93626 1.63408 1.50235 1.85546 1.93572 1.68675 1.87149 1.44398 1.20890 0.90736 0.92989 0.97906 1.19845 0.97113 1.01381 0.93801 1.20876 0.92102 1.01426 1.02874 1.20228 0.93420 0.89401 0.94410 1.21323 0.95426 1.06107 0.95990 0.93015 0.92802 0.94902 0.92638 0.92144 0.92246 0.77009 0.83542 0.84613 0.84980 0.85069 0.83990 0.90847 0.91200 0.90585 0.89901 0.91848 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.51 37.16 0.32 -2.52 16 2 C -0.14 -3.07 5.11 -26.73 -0.14 -3.21 16 3 C 0.24 5.64 1.83 -69.08 -0.13 5.51 16 4 H 0.05 1.30 6.63 -51.93 -0.34 0.96 16 5 C -0.54 -14.30 9.31 -34.44 -0.32 -14.62 16 6 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 9 Si 0.88 21.45 24.41 -169.99 -4.15 17.30 16 10 H -0.28 -6.51 6.83 56.52 0.39 -6.13 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.21 6.53 56.52 0.37 -5.85 16 13 N -0.69 -13.60 4.97 -55.88 -0.28 -13.88 16 14 C 0.55 9.98 6.27 -12.33 -0.08 9.90 16 15 O -0.54 -10.77 10.47 5.31 0.06 -10.71 16 16 C -0.14 -2.17 5.87 -104.97 -0.62 -2.79 16 17 C 0.01 0.08 8.94 -39.18 -0.35 -0.27 16 18 C -0.67 -7.52 5.65 -39.64 -0.22 -7.74 16 19 S 2.50 24.08 5.79 -107.50 -0.62 23.46 16 20 C -0.65 -3.62 10.79 101.05 1.09 -2.53 16 21 O -0.93 -12.56 17.12 -57.54 -0.99 -13.55 16 22 O -0.94 -11.18 17.12 -57.54 -0.98 -12.16 16 23 C -0.01 -0.06 9.12 -39.49 -0.36 -0.42 16 24 C -0.12 -1.31 5.87 -104.68 -0.61 -1.92 16 25 C -0.12 -0.89 9.59 36.01 0.35 -0.55 16 26 C 0.03 0.35 5.91 -104.22 -0.62 -0.27 16 27 C -0.13 -1.65 8.43 36.01 0.30 -1.35 16 28 H 0.05 0.99 5.65 -51.92 -0.29 0.70 16 29 H 0.05 1.10 7.84 -51.93 -0.41 0.69 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.28 3.21 -51.93 -0.17 1.11 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.40 7.04 6.61 -40.82 -0.27 6.77 16 35 H 0.15 1.85 5.97 -52.49 -0.31 1.54 16 36 H 0.14 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.14 1.12 7.56 -52.48 -0.40 0.72 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 42 H 0.08 0.55 5.88 -51.93 -0.31 0.25 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.61 5.71 -51.93 -0.30 0.31 16 45 H 0.10 1.57 5.84 -51.93 -0.30 1.26 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -35.16 363.25 -8.28 -43.44 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.08 Total: 6.63 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.48 Total: -20.65 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.50 Total: -39.23 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -1.91 Total: -36.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.15 Total: 17.30 kcal Atomic # 16 Polarization: 24.08 SS G_CDS: -0.62 Total: 23.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.16 -8.28 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183831927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.156 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds