Wall clock time and date at job start Tue Mar 31 2020 22:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47153 * 2 1 4 4 H 1.08994 * 109.47466 * 54.99374 * 3 2 1 5 5 C 1.50702 * 109.47012 * 175.00060 * 3 2 1 6 6 H 1.07998 * 119.99629 * 119.99805 * 5 3 2 7 7 C 1.37879 * 119.99481 * 299.99575 * 5 3 2 8 8 N 1.31514 * 119.99532 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 120.00424 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47319 * 89.99945 * 9 7 5 11 11 H 1.48497 * 109.47497 * 210.00310 * 9 7 5 12 12 H 1.48504 * 109.47156 * 330.00092 * 9 7 5 13 13 N 1.46500 * 109.46952 * 294.99546 * 3 2 1 14 14 C 1.34778 * 120.00133 * 84.99975 * 13 3 2 15 15 O 1.21563 * 119.99677 * 0.02562 * 14 13 3 16 16 C 1.47846 * 120.00551 * 179.97438 * 14 13 3 17 17 C 1.39600 * 120.13777 * 353.82058 * 16 14 13 18 18 C 1.37938 * 119.84664 * 179.78840 * 17 16 14 19 19 S 1.76202 * 119.92590 * 180.25062 * 18 17 16 20 20 C 1.81391 * 104.45142 * 270.23569 * 19 18 17 21 21 O 1.42094 * 104.27522 * 26.30937 * 19 18 17 22 22 O 1.42104 * 104.27683 * 154.16428 * 19 18 17 23 23 C 1.38383 * 120.14694 * 0.48877 * 18 17 16 24 24 C 1.38335 * 120.29232 * 359.73937 * 23 18 17 25 25 C 1.50700 * 119.92723 * 180.02562 * 24 23 18 26 26 C 1.37977 * 120.14456 * 0.02888 * 24 23 18 27 27 C 1.50708 * 120.07329 * 179.97438 * 26 24 23 28 28 H 1.09008 * 109.46943 * 60.00176 * 1 2 3 29 29 H 1.09001 * 109.47233 * 300.00901 * 1 2 3 30 30 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46981 * 119.99736 * 2 1 3 32 32 H 1.08994 * 109.47018 * 239.99732 * 2 1 3 33 33 H 0.96995 * 119.99869 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00572 * 265.00080 * 13 3 2 35 35 H 1.07996 * 120.07500 * 0.02562 * 17 16 14 36 36 H 1.08995 * 109.47374 * 59.99871 * 20 19 18 37 37 H 1.08999 * 109.47452 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47540 * 300.00119 * 20 19 18 39 39 H 1.08003 * 119.85208 * 179.72165 * 23 18 17 40 40 H 1.09007 * 109.47472 * 270.02374 * 25 24 23 41 41 H 1.08992 * 109.47225 * 30.02264 * 25 24 23 42 42 H 1.08999 * 109.46920 * 150.02587 * 25 24 23 43 43 H 1.09000 * 109.46795 * 263.51432 * 27 26 24 44 44 H 1.08999 * 109.46767 * 23.51972 * 27 26 24 45 45 H 1.09004 * 109.46608 * 143.51704 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8784 1.2280 8 7 5.4539 0.8804 1.3364 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2635 11 1 3.7935 0.2350 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6643 -1.3672 15 8 -0.3410 2.6326 -0.4322 16 6 0.0443 3.3258 -2.6303 17 6 0.9758 3.4789 -3.6588 18 6 0.6033 4.0930 -4.8364 19 16 1.7755 4.2814 -6.1385 20 6 2.5634 5.8819 -5.8101 21 8 2.6984 3.2203 -5.9353 22 8 0.9832 4.3479 -7.3163 23 6 -0.6874 4.5659 -4.9957 24 6 -1.6139 4.4216 -3.9786 25 6 -3.0174 4.9391 -4.1611 26 6 -1.2557 3.8049 -2.7974 27 6 -2.2661 3.6491 -1.6902 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 5.8769 0.4826 2.1133 34 1 2.2720 2.1231 -1.9979 35 1 1.9845 3.1139 -3.5341 36 1 3.0428 5.8570 -4.8316 37 1 3.3125 6.0822 -6.5762 38 1 1.8088 6.6684 -5.8250 39 1 -0.9726 5.0500 -5.9180 40 1 -3.0714 5.9722 -3.8175 41 1 -3.2875 4.8925 -5.2159 42 1 -3.7085 4.3270 -3.5816 43 1 -2.1468 4.4608 -0.9726 44 1 -3.2719 3.6793 -2.1093 45 1 -2.1103 2.6942 -1.1879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183831927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:46 Heat of formation + Delta-G solvation = -102.916792 kcal Electronic energy + Delta-G solvation = -28087.306771 eV Core-core repulsion = 24196.394299 eV Total energy + Delta-G solvation = -3890.912473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63662 -39.84872 -38.14624 -37.20050 -36.98006 -35.02716 -34.26308 -33.63277 -32.73657 -30.30609 -29.69300 -28.59887 -27.72855 -25.22857 -24.29485 -22.76159 -22.31228 -21.16338 -19.90268 -19.30181 -18.44991 -17.80437 -17.41882 -17.15579 -16.89392 -16.62843 -16.40493 -16.24079 -15.99634 -15.31695 -15.03734 -14.91648 -14.38073 -14.15308 -14.01923 -13.94207 -13.78241 -13.73161 -13.63849 -13.40789 -13.22554 -13.13442 -13.09183 -13.01878 -12.95672 -12.82302 -12.70321 -12.58707 -12.41425 -11.99061 -11.86973 -11.56292 -11.38245 -11.26248 -10.87306 -10.53515 -10.24199 -9.85236 -9.77919 -8.38910 -6.45099 -0.87931 -0.38593 -0.12334 1.26845 1.34185 1.44000 1.69014 1.90405 2.24978 2.32361 2.51789 2.96632 3.01085 3.14434 3.59062 3.63461 3.77546 4.00837 4.09053 4.12604 4.19785 4.22248 4.29604 4.30422 4.42316 4.54044 4.65464 4.70658 4.76826 4.81860 4.84132 4.89656 4.97607 4.98206 5.05511 5.08748 5.17053 5.20313 5.29894 5.38751 5.45709 5.50669 5.62049 5.75963 6.11728 6.56088 6.78445 7.16189 7.34256 8.76367 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003832 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.019808 B = 7305.293920 C = 8972.283430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.140 4.140 3 C 0.251 3.749 4 H 0.031 0.969 5 C -0.537 4.537 6 H 0.055 0.945 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.938 3.062 10 H -0.261 1.261 11 H -0.292 1.292 12 H -0.257 1.257 13 N -0.700 5.700 14 C 0.545 3.455 15 O -0.558 6.558 16 C -0.167 4.167 17 C -0.007 4.007 18 C -0.670 4.670 19 S 2.508 3.492 20 C -0.627 4.627 21 O -0.979 6.979 22 O -0.964 6.964 23 C -0.002 4.002 24 C -0.115 4.115 25 C -0.117 4.117 26 C 0.013 3.987 27 C -0.128 4.128 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.270 0.730 34 H 0.401 0.599 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.174 0.826 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.843 12.465 -15.278 24.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.178 4.178 3 C 0.147 3.853 4 H 0.048 0.952 5 C -0.575 4.575 6 H 0.073 0.927 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.765 3.235 10 H -0.187 1.187 11 H -0.220 1.220 12 H -0.181 1.181 13 N -0.348 5.348 14 C 0.333 3.667 15 O -0.440 6.440 16 C -0.171 4.171 17 C -0.026 4.026 18 C -0.755 4.755 19 S 2.690 3.310 20 C -0.781 4.781 21 O -0.976 6.976 22 O -0.962 6.962 23 C -0.020 4.020 24 C -0.116 4.116 25 C -0.173 4.173 26 C 0.012 3.988 27 C -0.183 4.183 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.237 0.763 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.191 0.809 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.081 11.758 -15.147 24.395 hybrid contribution 0.572 -0.318 1.393 1.539 sum -14.509 11.440 -13.754 23.034 Atomic orbital electron populations 1.21766 0.95011 1.00624 1.01669 1.22228 0.96081 0.98496 1.00985 1.18840 0.93354 0.89645 0.83497 0.95156 1.21284 0.90312 1.38890 1.07042 0.92717 1.25548 0.95765 0.95743 0.99842 1.69978 1.10320 1.46013 1.30840 0.86015 0.79419 0.79878 0.78219 1.18729 1.21961 1.18099 1.46052 1.15534 1.55961 1.17292 1.18513 0.81864 0.78505 0.87786 1.90676 1.51013 1.61282 1.40987 1.19977 0.96272 1.05954 0.94913 1.21152 0.99401 0.91452 0.90632 1.30637 1.13747 1.15227 1.15861 1.04893 0.74190 0.78506 0.73373 1.30059 1.15072 1.18673 1.14278 1.93571 1.64130 1.54037 1.85895 1.93535 1.69379 1.88122 1.45135 1.21352 0.89999 0.91893 0.98793 1.20221 0.98867 0.99973 0.92560 1.20993 0.89739 1.02220 1.04359 1.20402 0.92676 0.90050 0.95707 1.21242 0.97005 1.04300 0.95787 0.92998 0.93785 0.92355 0.93504 0.91811 0.92037 0.76292 0.84032 0.83684 0.82598 0.82098 0.80907 0.89141 0.89316 0.90143 0.90358 0.88825 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.51 71.98 0.61 -4.54 16 2 C -0.14 -6.12 5.11 30.60 0.16 -5.96 16 3 C 0.25 11.96 1.83 44.25 0.08 12.04 16 4 H 0.03 1.58 6.63 -2.39 -0.02 1.57 16 5 C -0.54 -29.63 9.31 25.60 0.24 -29.39 16 6 H 0.05 3.23 7.98 -2.91 -0.02 3.20 16 7 C 0.03 1.75 5.45 84.66 0.46 2.22 16 8 N -0.93 -56.26 13.96 21.45 0.30 -55.97 16 9 Si 0.94 44.75 24.41 68.60 1.67 46.43 16 10 H -0.26 -11.82 6.83 99.48 0.68 -11.14 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 12 H -0.26 -12.00 6.53 99.48 0.65 -11.35 16 13 N -0.70 -28.49 4.97 -448.96 -2.23 -30.72 16 14 C 0.54 20.52 6.27 86.79 0.54 21.06 16 15 O -0.56 -22.90 10.47 -3.91 -0.04 -22.94 16 16 C -0.17 -5.09 5.87 -20.09 -0.12 -5.20 16 17 C -0.01 -0.18 8.94 22.53 0.20 0.02 16 18 C -0.67 -14.04 5.65 22.23 0.13 -13.91 16 19 S 2.51 44.59 5.79 -56.49 -0.33 44.26 16 20 C -0.63 -4.69 10.79 113.37 1.22 -3.47 16 21 O -0.98 -26.66 17.12 -127.65 -2.19 -28.84 16 22 O -0.96 -21.08 17.12 -127.65 -2.18 -23.26 16 23 C 0.00 -0.03 9.12 22.33 0.20 0.17 16 24 C -0.12 -2.19 5.87 -19.90 -0.12 -2.31 16 25 C -0.12 -1.33 9.59 71.24 0.68 -0.65 16 26 C 0.01 0.32 5.91 -19.61 -0.12 0.21 16 27 C -0.13 -3.07 8.43 71.24 0.60 -2.47 16 28 H 0.05 1.99 5.65 -2.38 -0.01 1.97 16 29 H 0.04 1.77 7.84 -2.39 -0.02 1.75 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 2.13 3.21 -2.39 -0.01 2.12 16 32 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.40 15.11 6.61 -92.71 -0.61 14.49 16 35 H 0.14 3.78 5.97 -2.91 -0.02 3.77 16 36 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.17 1.99 7.56 -2.91 -0.02 1.96 16 40 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.09 0.72 8.08 -2.39 -0.02 0.70 16 42 H 0.08 0.87 5.88 -2.39 -0.01 0.85 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.09 1.60 5.71 -2.39 -0.01 1.59 16 45 H 0.08 2.32 5.84 -2.38 -0.01 2.31 16 Total: -1.00 -78.93 363.25 0.12 -78.81 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.34 Total: 24.43 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 4.78 Total: -32.20 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -1.93 Total: -86.69 kcal Atomic # 8 Polarization: -70.63 SS G_CDS: -4.41 Total: -75.04 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.43 kcal Atomic # 16 Polarization: 44.59 SS G_CDS: -0.33 Total: 44.26 kcal Total: -78.93 0.12 -78.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183831927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.110 kcal (2) G-P(sol) polarization free energy of solvation -78.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds