Wall clock time and date at job start Tue Mar 31 2020 22:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47204 * 2 1 4 4 H 1.08991 * 109.46936 * 306.36787 * 3 2 1 5 5 C 1.50700 * 109.46974 * 186.36058 * 3 2 1 6 6 H 1.07996 * 119.99837 * 245.39124 * 5 3 2 7 7 C 1.37874 * 120.00018 * 65.39936 * 5 3 2 8 8 N 1.31511 * 120.00042 * 5.91607 * 7 5 3 9 9 Si 1.86798 * 119.99902 * 185.92022 * 7 5 3 10 10 H 1.48494 * 109.47218 * 84.99462 * 9 7 5 11 11 H 1.48499 * 109.47170 * 204.99487 * 9 7 5 12 12 H 1.48501 * 109.47315 * 324.99104 * 9 7 5 13 13 N 1.46507 * 109.46695 * 66.36076 * 3 2 1 14 14 C 1.34773 * 120.00004 * 274.99803 * 13 3 2 15 15 O 1.21552 * 120.00162 * 0.02562 * 14 13 3 16 16 C 1.47847 * 119.99735 * 180.02562 * 14 13 3 17 17 C 1.39600 * 120.14562 * 1.21377 * 16 14 13 18 18 C 1.37936 * 119.85104 * 179.79212 * 17 16 14 19 19 S 1.76201 * 119.92452 * 180.23559 * 18 17 16 20 20 C 1.81404 * 104.44600 * 270.25107 * 19 18 17 21 21 O 1.42092 * 104.27887 * 26.32555 * 19 18 17 22 22 O 1.42097 * 104.27629 * 154.18405 * 19 18 17 23 23 C 1.38378 * 120.14495 * 0.48397 * 18 17 16 24 24 C 1.38337 * 120.29326 * 359.74964 * 23 18 17 25 25 C 1.50706 * 119.92841 * 179.97438 * 24 23 18 26 26 C 1.37974 * 120.14883 * 0.02562 * 24 23 18 27 27 C 1.50698 * 120.07859 * 180.02562 * 26 24 23 28 28 H 1.09000 * 109.47089 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47315 * 59.99857 * 1 2 3 30 30 H 1.09010 * 109.47128 * 299.99887 * 1 2 3 31 31 H 1.08999 * 109.47315 * 120.00143 * 2 1 3 32 32 H 1.08997 * 109.47035 * 240.00420 * 2 1 3 33 33 H 0.97001 * 120.00200 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99624 * 95.00218 * 13 3 2 35 35 H 1.07997 * 120.06957 * 0.02562 * 17 16 14 36 36 H 1.09003 * 109.46874 * 60.00256 * 20 19 18 37 37 H 1.09003 * 109.46725 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.46999 * 300.00204 * 20 19 18 39 39 H 1.08000 * 119.85257 * 179.72353 * 23 18 17 40 40 H 1.08999 * 109.47181 * 270.02760 * 25 24 23 41 41 H 1.09001 * 109.46793 * 30.02033 * 25 24 23 42 42 H 1.08998 * 109.46944 * 150.02036 * 25 24 23 43 43 H 1.09006 * 109.46613 * 262.88216 * 27 26 24 44 44 H 1.08994 * 109.47131 * 22.88158 * 27 26 24 45 45 H 1.08997 * 109.47309 * 142.88551 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5866 1.9882 -0.8274 5 6 3.5388 1.4454 -0.1574 6 1 4.1653 1.8042 0.6457 7 6 4.1100 0.9901 -1.3267 8 7 3.3476 0.6629 -2.3471 9 14 5.9669 0.8378 -1.4615 10 1 6.3976 -0.4712 -0.9085 11 1 6.3687 0.9288 -2.8882 12 1 6.6105 1.9349 -0.6952 13 7 1.6806 2.0875 1.2654 14 6 0.4662 2.6534 1.4123 15 8 -0.3310 2.6282 0.4950 16 6 0.1038 3.3047 2.6891 17 6 1.0260 3.3576 3.7357 18 6 0.6830 3.9706 4.9228 19 16 1.8477 4.0439 6.2429 20 6 1.5497 2.5282 7.1940 21 8 3.1125 3.9873 5.5979 22 8 1.4575 5.1870 6.9914 23 6 -0.5756 4.5235 5.0810 24 6 -1.4959 4.4702 4.0496 25 6 -2.8645 5.0745 4.2310 26 6 -1.1640 3.8641 2.8553 27 6 -2.1675 3.8075 1.7325 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.7494 0.3422 -3.1697 34 1 2.3166 2.1073 1.9975 35 1 2.0072 2.9229 3.6148 36 1 1.7130 1.6603 6.5550 37 1 2.2354 2.4898 8.0405 38 1 0.5222 2.5235 7.5576 39 1 -0.8408 4.9983 6.0141 40 1 -3.5434 4.3224 4.6330 41 1 -2.8020 5.9144 4.9230 42 1 -3.2380 5.4238 3.2684 43 1 -2.6723 2.8414 1.7449 44 1 -2.9017 4.6027 1.8610 45 1 -1.6544 3.9371 0.7797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183831940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:50 Heat of formation + Delta-G solvation = -109.556761 kcal Electronic energy + Delta-G solvation = -27998.261505 eV Core-core repulsion = 24107.061101 eV Total energy + Delta-G solvation = -3891.200403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56895 -39.75132 -38.13690 -37.04042 -36.94799 -35.01228 -34.10495 -33.49015 -32.51736 -30.28905 -29.40350 -28.38565 -27.72562 -25.38677 -24.35676 -22.74952 -22.01348 -21.05333 -19.87790 -19.20757 -18.21556 -17.73311 -17.15851 -17.09538 -16.86081 -16.52153 -16.40487 -16.24726 -15.90990 -15.22703 -14.97766 -14.59948 -14.35907 -14.00040 -13.92462 -13.87704 -13.64545 -13.63045 -13.40181 -13.25715 -13.19510 -13.11473 -13.07583 -13.01242 -12.90337 -12.73637 -12.62482 -12.57350 -12.18557 -12.09265 -11.97625 -11.60416 -11.54544 -11.09741 -10.57506 -10.43587 -10.22164 -9.83447 -9.63485 -8.20225 -6.34521 -0.86498 -0.37006 -0.10405 1.43791 1.44122 1.54107 1.73726 1.91350 2.31936 2.53594 2.57260 3.03035 3.11547 3.16052 3.60692 3.68789 3.79518 4.02502 4.12528 4.15071 4.22552 4.31936 4.46399 4.53783 4.54637 4.66213 4.70219 4.73668 4.77252 4.85428 4.88550 4.99746 5.04980 5.06765 5.17021 5.23177 5.31632 5.41463 5.45135 5.55643 5.60382 5.73387 5.78194 5.89384 6.07100 6.73399 6.89917 7.30563 7.48043 8.87682 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.003847 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.300838 B = 7276.464559 C = 9101.283797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.278 3.722 4 H 0.007 0.993 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.703 5.703 14 C 0.539 3.461 15 O -0.563 6.563 16 C -0.167 4.167 17 C -0.006 4.006 18 C -0.670 4.670 19 S 2.507 3.493 20 C -0.624 4.624 21 O -0.979 6.979 22 O -0.966 6.966 23 C -0.003 4.003 24 C -0.116 4.116 25 C -0.117 4.117 26 C 0.010 3.990 27 C -0.132 4.132 28 H 0.048 0.952 29 H 0.028 0.972 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.265 0.735 34 H 0.399 0.601 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.174 0.826 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 3.997 21.957 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 C 0.175 3.825 4 H 0.025 0.975 5 C -0.591 4.591 6 H 0.086 0.914 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.193 1.193 13 N -0.352 5.352 14 C 0.328 3.672 15 O -0.445 6.445 16 C -0.171 4.171 17 C -0.026 4.026 18 C -0.755 4.755 19 S 2.689 3.311 20 C -0.778 4.778 21 O -0.976 6.976 22 O -0.964 6.964 23 C -0.021 4.021 24 C -0.117 4.117 25 C -0.173 4.173 26 C 0.009 3.991 27 C -0.188 4.188 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.234 0.766 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.178 0.822 39 H 0.191 0.809 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.332 4.575 21.196 24.020 hybrid contribution 0.902 -0.733 -0.968 1.513 sum -9.429 3.842 20.227 22.646 Atomic orbital electron populations 1.21678 0.96526 0.99374 1.00528 1.21700 0.94242 0.98693 1.00547 1.18431 0.93941 0.89411 0.80724 0.97505 1.21545 0.91558 1.44112 1.01867 0.91418 1.25702 1.02967 0.94549 0.94758 1.70097 1.37103 1.44128 1.03832 0.85466 0.79443 0.79004 0.77113 1.19326 1.21158 1.19293 1.46307 1.14988 1.56042 1.17834 1.18591 0.82295 0.78702 0.87653 1.90660 1.50318 1.60323 1.43204 1.20041 0.96747 1.05748 0.94573 1.21145 0.98177 0.92240 0.90989 1.30670 1.14280 1.14372 1.16137 1.04951 0.73186 0.78315 0.74633 1.30043 1.14916 1.17832 1.15004 1.93567 1.40657 1.88145 1.75238 1.93533 1.83288 1.47978 1.71562 1.21341 0.89713 0.91338 0.99741 1.20220 0.99004 1.00072 0.92384 1.20990 0.90733 1.01519 1.04056 1.20403 0.92719 0.90295 0.95647 1.21283 0.97446 1.03087 0.96936 0.93346 0.95319 0.93514 0.93478 0.92497 0.92561 0.76579 0.83764 0.83348 0.82515 0.82150 0.80869 0.89025 0.89282 0.90382 0.90396 0.88909 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.54 71.98 0.61 -4.79 16 2 C -0.11 -5.44 5.50 30.60 0.17 -5.27 16 3 C 0.28 14.33 2.10 44.25 0.09 14.43 16 4 H 0.01 0.43 7.55 -2.39 -0.02 0.41 16 5 C -0.55 -29.78 8.67 25.60 0.22 -29.56 16 6 H 0.07 3.48 7.72 -2.91 -0.02 3.46 16 7 C 0.02 1.14 5.21 84.65 0.44 1.58 16 8 N -0.91 -52.81 11.99 21.45 0.26 -52.56 16 9 Si 0.96 42.82 29.54 68.60 2.03 44.84 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 N -0.70 -30.07 4.99 -448.97 -2.24 -32.31 16 14 C 0.54 21.98 6.38 86.79 0.55 22.53 16 15 O -0.56 -25.74 10.37 -3.88 -0.04 -25.78 16 16 C -0.17 -5.40 5.87 -20.09 -0.12 -5.52 16 17 C -0.01 -0.16 8.96 22.53 0.20 0.04 16 18 C -0.67 -14.26 5.65 22.23 0.13 -14.14 16 19 S 2.51 43.52 5.80 -56.49 -0.33 43.19 16 20 C -0.62 -3.81 10.80 113.37 1.22 -2.59 16 21 O -0.98 -26.02 17.12 -127.65 -2.19 -28.20 16 22 O -0.97 -21.15 17.12 -127.65 -2.18 -23.34 16 23 C 0.00 -0.05 9.12 22.33 0.20 0.15 16 24 C -0.12 -2.37 5.87 -19.90 -0.12 -2.49 16 25 C -0.12 -1.50 9.59 71.24 0.68 -0.81 16 26 C 0.01 0.29 5.91 -19.61 -0.12 0.17 16 27 C -0.13 -3.56 8.54 71.24 0.61 -2.95 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.03 1.35 7.92 -2.39 -0.02 1.33 16 30 H 0.05 1.97 5.61 -2.38 -0.01 1.95 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 3.05 6.63 -2.39 -0.02 3.04 16 33 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.40 15.00 6.56 -92.71 -0.61 14.39 16 35 H 0.14 3.80 5.92 -2.91 -0.02 3.79 16 36 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.16 0.19 8.14 -2.39 -0.02 0.18 16 39 H 0.17 2.09 7.56 -2.91 -0.02 2.07 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 42 H 0.08 0.99 5.88 -2.39 -0.01 0.98 16 43 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.09 1.85 5.69 -2.39 -0.01 1.84 16 45 H 0.08 2.66 5.66 -2.39 -0.01 2.65 16 Total: -1.00 -78.87 371.03 0.51 -78.36 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.42 Total: 25.01 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 4.79 Total: -29.21 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.98 Total: -84.87 kcal Atomic # 8 Polarization: -72.91 SS G_CDS: -4.41 Total: -77.32 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 43.52 SS G_CDS: -0.33 Total: 43.19 kcal Total: -78.87 0.51 -78.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183831940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.199 kcal (2) G-P(sol) polarization free energy of solvation -78.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds