Wall clock time and date at job start Tue Mar 31 2020 22:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47414 * 2 1 4 4 H 1.09007 * 109.47095 * 54.99823 * 3 2 1 5 5 C 1.50696 * 109.47613 * 174.99932 * 3 2 1 6 6 H 1.07994 * 120.00346 * 119.99590 * 5 3 2 7 7 C 1.37887 * 119.99788 * 300.00422 * 5 3 2 8 8 N 1.31509 * 119.99958 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 119.99926 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47254 * 90.00349 * 9 7 5 11 11 H 1.48499 * 109.47452 * 210.00117 * 9 7 5 12 12 H 1.48508 * 109.47443 * 330.00087 * 9 7 5 13 13 N 1.46503 * 109.47306 * 295.00057 * 3 2 1 14 14 C 1.34780 * 120.00042 * 84.99918 * 13 3 2 15 15 O 1.21556 * 119.99834 * 359.97438 * 14 13 3 16 16 C 1.47845 * 119.99977 * 180.02562 * 14 13 3 17 17 C 1.39595 * 120.14392 * 5.98982 * 16 14 13 18 18 C 1.37931 * 119.85554 * 180.02562 * 17 16 14 19 19 C 1.38390 * 120.14186 * 359.74145 * 18 17 16 20 20 C 1.38339 * 120.29108 * 0.51286 * 19 18 17 21 21 C 1.37978 * 120.14432 * 359.49170 * 20 19 18 22 22 S 1.76195 * 120.07240 * 180.27715 * 21 20 19 23 23 O 1.42104 * 104.27656 * 228.36919 * 22 21 20 24 24 O 1.42103 * 104.28038 * 356.22734 * 22 21 20 25 25 C 1.81401 * 104.45282 * 112.29985 * 22 21 20 26 26 C 1.52999 * 109.47627 * 184.22065 * 25 22 21 27 27 C 1.53004 * 109.46946 * 304.22676 * 25 22 21 28 28 H 1.09000 * 109.46971 * 300.00455 * 1 2 3 29 29 H 1.09005 * 109.46810 * 59.99518 * 1 2 3 30 30 H 1.09001 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46971 * 239.99545 * 2 1 3 32 32 H 1.09000 * 109.46403 * 120.00265 * 2 1 3 33 33 H 0.97004 * 120.00009 * 179.97438 * 8 7 5 34 34 H 0.96998 * 119.99944 * 265.00218 * 13 3 2 35 35 H 1.08008 * 120.07516 * 0.03889 * 17 16 14 36 36 H 1.08002 * 119.93325 * 179.97438 * 18 17 16 37 37 H 1.07995 * 119.85114 * 180.27829 * 19 18 17 38 38 H 1.07994 * 119.92394 * 179.76225 * 20 19 18 39 39 H 1.09000 * 109.47361 * 64.21714 * 25 22 21 40 40 H 1.09002 * 109.46652 * 60.00120 * 26 25 22 41 41 H 1.08998 * 109.46974 * 179.97438 * 26 25 22 42 42 H 1.09004 * 109.46961 * 300.00260 * 26 25 22 43 43 H 1.09000 * 109.47066 * 180.02562 * 27 25 22 44 44 H 1.08999 * 109.46694 * 299.99317 * 27 25 22 45 45 H 1.08995 * 109.47647 * 59.99596 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 5.4540 0.8794 1.3359 9 14 3.0963 0.1099 2.5707 10 1 2.8745 -1.3262 2.2645 11 1 3.7940 0.2357 3.8755 12 1 1.7880 0.8092 2.6395 13 7 1.6526 2.0975 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3412 2.6319 -0.4323 16 6 0.0440 3.3250 -2.6304 17 6 0.8803 3.2557 -3.7460 18 6 0.5097 3.8746 -4.9216 19 6 -0.6909 4.5586 -4.9983 20 6 -1.5219 4.6355 -3.8949 21 6 -1.1629 4.0209 -2.7129 22 16 -2.2261 4.1139 -1.3110 23 8 -1.3675 4.4946 -0.2446 24 8 -3.2891 4.9574 -1.7326 25 6 -2.8165 2.4146 -1.0771 26 6 -3.8407 2.3823 0.0591 27 6 -3.4713 1.9199 -2.3684 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 5.8771 0.4815 2.1129 34 1 2.2720 2.1231 -1.9978 35 1 1.8156 2.7185 -3.6887 36 1 1.1560 3.8222 -5.7853 37 1 -0.9786 5.0377 -5.9224 38 1 -2.4557 5.1741 -3.9603 39 1 -1.9750 1.7689 -0.8261 40 1 -4.6823 3.0280 -0.1921 41 1 -4.1957 1.3614 0.1992 42 1 -3.3741 2.7348 0.9790 43 1 -3.8264 0.8991 -2.2277 44 1 -4.3128 2.5656 -2.6194 45 1 -2.7416 1.9429 -3.1777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183932684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:02 Heat of formation + Delta-G solvation = -66.321180 kcal Electronic energy + Delta-G solvation = -29425.199818 eV Core-core repulsion = 25535.874250 eV Total energy + Delta-G solvation = -3889.325568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.29668 -38.48406 -36.77418 -35.64271 -35.47823 -34.82304 -32.79903 -32.01605 -31.48140 -30.73745 -27.63429 -27.40458 -24.27262 -23.34854 -22.75067 -22.26577 -21.07479 -19.81890 -18.85060 -18.26466 -17.22201 -16.47387 -16.20928 -16.08513 -15.62179 -15.46879 -15.14906 -14.81126 -14.48929 -14.26638 -14.06625 -13.50725 -13.32750 -13.23184 -13.03486 -12.92509 -12.52061 -12.45420 -12.37361 -12.05058 -11.89253 -11.82953 -11.71427 -11.51689 -11.47349 -11.35200 -11.09401 -10.92926 -10.69226 -10.65311 -10.04301 -9.98609 -9.64353 -9.51462 -9.38882 -9.28790 -9.19433 -8.80552 -8.20381 -6.25521 -4.28769 0.25997 0.56529 0.91790 2.87638 3.08795 3.19482 3.33304 3.37598 3.55061 3.69442 4.06186 4.27643 4.36388 4.55758 4.64096 4.65870 4.74081 4.91198 5.07994 5.12831 5.16416 5.29737 5.37828 5.40158 5.49937 5.58023 5.62676 5.79968 5.82643 5.89679 5.90782 5.92013 5.97975 6.04146 6.08210 6.09058 6.53075 6.56767 6.59968 6.71608 6.82070 7.10534 7.19206 7.42388 7.97363 8.37638 8.58993 8.74657 9.34112 10.86413 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.004689 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.298900 B = 5969.387139 C = 7051.377904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.239 3.761 4 H 0.059 0.941 5 C -0.538 4.538 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.881 3.119 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.257 1.257 13 N -0.679 5.679 14 C 0.525 3.475 15 O -0.523 6.523 16 C -0.033 4.033 17 C -0.107 4.107 18 C -0.075 4.075 19 C -0.124 4.124 20 C -0.033 4.033 21 C -0.613 4.613 22 S 2.508 3.492 23 O -0.904 6.904 24 O -0.962 6.962 25 C -0.570 4.570 26 C -0.138 4.138 27 C -0.141 4.141 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.268 0.732 34 H 0.396 0.604 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.148 0.852 39 H 0.168 0.832 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 2.002 -12.873 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.136 3.864 4 H 0.076 0.924 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.182 1.182 13 N -0.326 5.326 14 C 0.310 3.690 15 O -0.404 6.404 16 C -0.037 4.037 17 C -0.127 4.127 18 C -0.093 4.093 19 C -0.143 4.143 20 C -0.052 4.052 21 C -0.698 4.698 22 S 2.686 3.314 23 O -0.902 6.902 24 O -0.960 6.960 25 C -0.681 4.681 26 C -0.196 4.196 27 C -0.199 4.199 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.231 0.769 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.186 0.814 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.099 2.646 -11.612 20.025 hybrid contribution 0.501 -1.135 -0.316 1.280 sum -15.598 1.511 -11.928 19.694 Atomic orbital electron populations 1.21974 0.97186 0.99363 1.02176 1.22296 0.94259 0.99796 1.01421 1.19313 0.96020 0.88538 0.82482 0.92350 1.20994 0.88372 1.40114 1.08068 0.90166 1.24815 0.94875 0.95084 0.97600 1.69858 1.08714 1.44274 1.29816 0.86926 0.81188 0.79815 0.81006 1.20253 1.22064 1.18169 1.46050 1.13978 1.54239 1.18328 1.18297 0.84073 0.79947 0.86658 1.90727 1.50767 1.59181 1.39700 1.19897 0.93420 0.95689 0.94699 1.21537 0.99461 0.99218 0.92476 1.21413 0.95971 0.94325 0.97630 1.21456 0.94660 0.99331 0.98872 1.20997 0.99425 0.94200 0.90597 1.30869 1.11209 1.09113 1.18632 1.05389 0.74272 0.77367 0.74375 1.93648 1.64174 1.80330 1.51999 1.93484 1.56386 1.63553 1.82537 1.30311 1.10493 1.23752 1.03499 1.21573 0.97132 1.04500 0.96397 1.21677 1.00978 1.03368 0.93921 0.92308 0.93163 0.94666 0.92178 0.92421 0.92204 0.76912 0.84325 0.84681 0.84792 0.83453 0.81448 0.91571 0.90170 0.90812 0.90577 0.91152 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.38 37.16 0.31 -2.39 16 2 C -0.14 -2.88 5.11 -26.73 -0.14 -3.02 16 3 C 0.24 5.42 1.83 -69.09 -0.13 5.30 16 4 H 0.06 1.48 6.63 -51.93 -0.34 1.13 16 5 C -0.54 -14.07 9.31 -34.44 -0.32 -14.40 16 6 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 9 Si 0.88 21.22 24.41 -169.99 -4.15 17.07 16 10 H -0.28 -6.38 6.83 56.52 0.39 -5.99 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.12 6.53 56.52 0.37 -5.75 16 13 N -0.68 -12.79 4.97 -55.88 -0.28 -13.07 16 14 C 0.52 9.51 6.08 -12.33 -0.07 9.44 16 15 O -0.52 -10.35 6.35 -19.79 -0.13 -10.48 16 16 C -0.03 -0.50 5.86 -104.97 -0.62 -1.11 16 17 C -0.11 -1.27 9.53 -39.19 -0.37 -1.65 16 18 C -0.08 -0.71 10.03 -39.64 -0.40 -1.11 16 19 C -0.12 -1.16 10.04 -39.49 -0.40 -1.56 16 20 C -0.03 -0.39 9.49 -39.64 -0.38 -0.77 16 21 C -0.61 -8.85 4.60 -39.19 -0.18 -9.03 16 22 S 2.51 39.95 4.00 -107.50 -0.43 39.52 16 23 O -0.90 -18.42 14.76 -67.49 -1.00 -19.42 16 24 O -0.96 -15.71 16.73 -57.54 -0.96 -16.68 16 25 C -0.57 -7.50 2.92 -26.73 -0.08 -7.58 16 26 C -0.14 -1.60 9.20 37.16 0.34 -1.26 16 27 C -0.14 -1.44 9.00 37.16 0.33 -1.11 16 28 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 29 H 0.05 0.84 4.69 -51.93 -0.24 0.60 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.27 3.22 -51.93 -0.17 1.11 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.40 6.47 6.61 -40.82 -0.27 6.20 16 35 H 0.14 1.41 6.45 -52.48 -0.34 1.07 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.15 1.52 7.22 -52.49 -0.38 1.14 16 39 H 0.17 2.43 4.36 -51.92 -0.23 2.21 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.62 7.33 -51.93 -0.38 0.24 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -33.80 356.24 -9.15 -42.95 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.16 Total: 8.00 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -2.19 Total: -28.13 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.50 Total: -38.21 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -2.08 Total: -46.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.15 Total: 17.07 kcal Atomic # 16 Polarization: 39.95 SS G_CDS: -0.43 Total: 39.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.80 -9.15 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183932684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.367 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds