Wall clock time and date at job start Tue Mar 31 2020 22:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47414 * 2 1 4 4 H 1.09007 * 109.47095 * 54.99823 * 3 2 1 5 5 C 1.50696 * 109.47613 * 174.99932 * 3 2 1 6 6 H 1.07994 * 120.00346 * 119.99590 * 5 3 2 7 7 C 1.37887 * 119.99788 * 300.00422 * 5 3 2 8 8 N 1.31509 * 119.99958 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 119.99926 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47254 * 90.00349 * 9 7 5 11 11 H 1.48499 * 109.47452 * 210.00117 * 9 7 5 12 12 H 1.48508 * 109.47443 * 330.00087 * 9 7 5 13 13 N 1.46503 * 109.47306 * 295.00057 * 3 2 1 14 14 C 1.34780 * 120.00042 * 84.99918 * 13 3 2 15 15 O 1.21556 * 119.99834 * 359.97438 * 14 13 3 16 16 C 1.47845 * 119.99977 * 180.02562 * 14 13 3 17 17 C 1.39595 * 120.14392 * 5.98982 * 16 14 13 18 18 C 1.37931 * 119.85554 * 180.02562 * 17 16 14 19 19 C 1.38390 * 120.14186 * 359.74145 * 18 17 16 20 20 C 1.38339 * 120.29108 * 0.51286 * 19 18 17 21 21 C 1.37978 * 120.14432 * 359.49170 * 20 19 18 22 22 S 1.76195 * 120.07240 * 180.27715 * 21 20 19 23 23 O 1.42104 * 104.27656 * 228.36919 * 22 21 20 24 24 O 1.42103 * 104.28038 * 356.22734 * 22 21 20 25 25 C 1.81401 * 104.45282 * 112.29985 * 22 21 20 26 26 C 1.52999 * 109.47627 * 184.22065 * 25 22 21 27 27 C 1.53004 * 109.46946 * 304.22676 * 25 22 21 28 28 H 1.09000 * 109.46971 * 300.00455 * 1 2 3 29 29 H 1.09005 * 109.46810 * 59.99518 * 1 2 3 30 30 H 1.09001 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46971 * 239.99545 * 2 1 3 32 32 H 1.09000 * 109.46403 * 120.00265 * 2 1 3 33 33 H 0.97004 * 120.00009 * 179.97438 * 8 7 5 34 34 H 0.96998 * 119.99944 * 265.00218 * 13 3 2 35 35 H 1.08008 * 120.07516 * 0.03889 * 17 16 14 36 36 H 1.08002 * 119.93325 * 179.97438 * 18 17 16 37 37 H 1.07995 * 119.85114 * 180.27829 * 19 18 17 38 38 H 1.07994 * 119.92394 * 179.76225 * 20 19 18 39 39 H 1.09000 * 109.47361 * 64.21714 * 25 22 21 40 40 H 1.09002 * 109.46652 * 60.00120 * 26 25 22 41 41 H 1.08998 * 109.46974 * 179.97438 * 26 25 22 42 42 H 1.09004 * 109.46961 * 300.00260 * 26 25 22 43 43 H 1.09000 * 109.47066 * 180.02562 * 27 25 22 44 44 H 1.08999 * 109.46694 * 299.99317 * 27 25 22 45 45 H 1.08995 * 109.47647 * 59.99596 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 5.4540 0.8794 1.3359 9 14 3.0963 0.1099 2.5707 10 1 2.8745 -1.3262 2.2645 11 1 3.7940 0.2357 3.8755 12 1 1.7880 0.8092 2.6395 13 7 1.6526 2.0975 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3412 2.6319 -0.4323 16 6 0.0440 3.3250 -2.6304 17 6 0.8803 3.2557 -3.7460 18 6 0.5097 3.8746 -4.9216 19 6 -0.6909 4.5586 -4.9983 20 6 -1.5219 4.6355 -3.8949 21 6 -1.1629 4.0209 -2.7129 22 16 -2.2261 4.1139 -1.3110 23 8 -1.3675 4.4946 -0.2446 24 8 -3.2891 4.9574 -1.7326 25 6 -2.8165 2.4146 -1.0771 26 6 -3.8407 2.3823 0.0591 27 6 -3.4713 1.9199 -2.3684 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 5.8771 0.4815 2.1129 34 1 2.2720 2.1231 -1.9978 35 1 1.8156 2.7185 -3.6887 36 1 1.1560 3.8222 -5.7853 37 1 -0.9786 5.0377 -5.9224 38 1 -2.4557 5.1741 -3.9603 39 1 -1.9750 1.7689 -0.8261 40 1 -4.6823 3.0280 -0.1921 41 1 -4.1957 1.3614 0.1992 42 1 -3.3741 2.7348 0.9790 43 1 -3.8264 0.8991 -2.2277 44 1 -4.3128 2.5656 -2.6194 45 1 -2.7416 1.9429 -3.1777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183932684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:01 Heat of formation + Delta-G solvation = -90.562013 kcal Electronic energy + Delta-G solvation = -29426.250980 eV Core-core repulsion = 25535.874250 eV Total energy + Delta-G solvation = -3890.376729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.54251 -39.58341 -38.08903 -37.13115 -36.82890 -35.84779 -34.51985 -33.65295 -32.40264 -31.88489 -29.41148 -28.26585 -25.52651 -24.44180 -24.24701 -23.26771 -22.49588 -21.34745 -20.08447 -19.50246 -18.70372 -17.83350 -17.59571 -17.43378 -16.94539 -16.74462 -16.38582 -15.89612 -15.68921 -15.52481 -15.31385 -15.02327 -14.66232 -14.31428 -14.16884 -14.08764 -13.89870 -13.68826 -13.58473 -13.39330 -13.18657 -13.04273 -13.01369 -12.84786 -12.72883 -12.60187 -12.45291 -12.37347 -12.10127 -11.83824 -11.79067 -11.34956 -11.24264 -11.09416 -10.85944 -10.79884 -10.40572 -10.14386 -9.77600 -8.38880 -6.44311 -0.81662 -0.48187 0.02848 1.25575 1.35763 1.45061 1.77178 1.95720 2.24076 2.26091 2.56080 2.93413 2.97904 3.31347 3.59150 3.68164 3.68971 3.88247 4.01917 4.20746 4.28053 4.29448 4.33753 4.36278 4.46650 4.50575 4.59551 4.65566 4.71336 4.74842 4.85059 4.93474 4.99752 5.04702 5.08966 5.12825 5.14006 5.17063 5.25378 5.27200 5.39523 5.54435 5.60781 5.74311 6.10234 6.56079 6.71875 7.14150 7.30243 8.76195 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.004689 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.298900 B = 5969.387139 C = 7051.377904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.247 3.753 4 H 0.026 0.974 5 C -0.534 4.534 6 H 0.057 0.943 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.933 3.067 10 H -0.255 1.255 11 H -0.296 1.296 12 H -0.259 1.259 13 N -0.683 5.683 14 C 0.520 3.480 15 O -0.542 6.542 16 C -0.061 4.061 17 C -0.109 4.109 18 C -0.064 4.064 19 C -0.106 4.106 20 C -0.042 4.042 21 C -0.623 4.623 22 S 2.493 3.507 23 O -0.966 6.966 24 O -0.978 6.978 25 C -0.554 4.554 26 C -0.146 4.146 27 C -0.143 4.143 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.270 0.730 34 H 0.406 0.594 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.177 0.823 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.523 1.085 -16.043 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.143 3.857 4 H 0.044 0.956 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.760 3.240 10 H -0.181 1.181 11 H -0.224 1.224 12 H -0.184 1.184 13 N -0.332 5.332 14 C 0.307 3.693 15 O -0.424 6.424 16 C -0.064 4.064 17 C -0.128 4.128 18 C -0.082 4.082 19 C -0.125 4.125 20 C -0.061 4.061 21 C -0.711 4.711 22 S 2.678 3.322 23 O -0.964 6.964 24 O -0.976 6.976 25 C -0.667 4.667 26 C -0.205 4.205 27 C -0.201 4.201 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.168 0.832 36 H 0.195 0.805 37 H 0.195 0.805 38 H 0.176 0.824 39 H 0.173 0.827 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.044 1.764 -14.790 23.398 hybrid contribution 1.080 -0.754 0.499 1.408 sum -16.964 1.011 -14.292 22.205 Atomic orbital electron populations 1.21894 0.95021 1.01072 1.01995 1.22190 0.96199 0.97835 1.01316 1.18908 0.93400 0.90006 0.83406 0.95589 1.21266 0.90281 1.38583 1.07084 0.92505 1.25518 0.95705 0.95904 0.99748 1.69970 1.10276 1.46133 1.30822 0.86085 0.79449 0.80117 0.78312 1.18080 1.22409 1.18376 1.45808 1.14964 1.55024 1.17390 1.18833 0.83261 0.79338 0.87843 1.90727 1.51254 1.59498 1.40896 1.19611 0.94904 0.97812 0.94121 1.21806 0.99320 0.99242 0.92429 1.21908 0.96277 0.92329 0.97677 1.21976 0.93558 0.97575 0.99361 1.21300 1.00499 0.93874 0.90406 1.30496 1.10940 1.10800 1.18844 1.05407 0.73972 0.78687 0.74181 1.93577 1.65776 1.82271 1.54729 1.93445 1.56436 1.65104 1.82585 1.30113 1.10557 1.20284 1.05793 1.21730 0.97146 1.06375 0.95238 1.21791 1.01384 1.04662 0.92259 0.93888 0.92116 0.91850 0.90927 0.93719 0.92106 0.75677 0.83177 0.80547 0.80526 0.82392 0.82721 0.90104 0.87651 0.92427 0.88457 0.89923 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.38 71.98 0.60 -4.38 16 2 C -0.14 -5.59 5.11 30.59 0.16 -5.43 16 3 C 0.25 11.44 1.83 44.24 0.08 11.52 16 4 H 0.03 1.38 6.63 -2.38 -0.02 1.36 16 5 C -0.53 -28.79 9.31 25.60 0.24 -28.55 16 6 H 0.06 3.25 7.98 -2.91 -0.02 3.23 16 7 C 0.03 1.75 5.45 84.66 0.46 2.21 16 8 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 9 Si 0.93 44.54 24.41 68.60 1.67 46.21 16 10 H -0.26 -11.26 6.83 99.48 0.68 -10.58 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.26 -12.34 6.53 99.48 0.65 -11.69 16 13 N -0.68 -26.11 4.97 -448.97 -2.23 -28.34 16 14 C 0.52 19.11 6.08 86.79 0.53 19.64 16 15 O -0.54 -22.18 6.35 20.11 0.13 -22.05 16 16 C -0.06 -1.77 5.86 -20.09 -0.12 -1.88 16 17 C -0.11 -2.30 9.53 22.52 0.21 -2.09 16 18 C -0.06 -0.91 10.03 22.23 0.22 -0.69 16 19 C -0.11 -1.47 10.04 22.33 0.22 -1.25 16 20 C -0.04 -0.87 9.49 22.23 0.21 -0.66 16 21 C -0.62 -17.43 4.60 22.53 0.10 -17.33 16 22 S 2.49 80.91 4.00 -56.49 -0.23 80.69 16 23 O -0.97 -41.82 14.76 -118.13 -1.74 -43.56 16 24 O -0.98 -32.13 16.73 -127.65 -2.14 -34.26 16 25 C -0.55 -14.19 2.92 30.60 0.09 -14.10 16 26 C -0.15 -3.30 9.20 71.98 0.66 -2.64 16 27 C -0.14 -2.56 9.00 71.98 0.65 -1.91 16 28 H 0.04 1.62 7.84 -2.39 -0.02 1.60 16 29 H 0.06 1.98 4.69 -2.38 -0.01 1.97 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.04 1.93 3.22 -2.39 -0.01 1.92 16 33 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.41 13.37 6.61 -92.71 -0.61 12.75 16 35 H 0.15 2.73 6.45 -2.91 -0.02 2.71 16 36 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.16 2.87 7.22 -2.91 -0.02 2.85 16 39 H 0.16 4.47 4.36 -2.39 -0.01 4.46 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.20 7.33 -2.39 -0.02 1.18 16 Total: -1.00 -78.09 356.24 0.41 -77.68 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.33 Total: 26.69 kcal Atomic # 6 Polarization: -51.86 SS G_CDS: 4.33 Total: -47.54 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -1.93 Total: -83.86 kcal Atomic # 8 Polarization: -96.12 SS G_CDS: -3.75 Total: -99.87 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.67 Total: 46.21 kcal Atomic # 16 Polarization: 80.91 SS G_CDS: -0.23 Total: 80.69 kcal Total: -78.09 0.41 -77.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183932684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.882 kcal (2) G-P(sol) polarization free energy of solvation -78.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds