Wall clock time and date at job start Tue Mar 31 2020 22:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46878 * 2 1 4 4 H 1.08994 * 109.47104 * 304.99661 * 3 2 1 5 5 C 1.50700 * 109.47006 * 184.99537 * 3 2 1 6 6 H 1.07999 * 120.00121 * 240.00094 * 5 3 2 7 7 C 1.37883 * 119.99959 * 60.00023 * 5 3 2 8 8 N 1.31521 * 119.99972 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00393 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46994 * 89.99812 * 9 7 5 11 11 H 1.48499 * 109.47268 * 210.00369 * 9 7 5 12 12 H 1.48509 * 109.46933 * 330.00192 * 9 7 5 13 13 N 1.46502 * 109.47141 * 64.99971 * 3 2 1 14 14 C 1.34777 * 119.99763 * 275.00271 * 13 3 2 15 15 O 1.21548 * 119.99995 * 359.97438 * 14 13 3 16 16 C 1.47850 * 119.99744 * 180.02562 * 14 13 3 17 17 C 1.39590 * 120.14370 * 353.84987 * 16 14 13 18 18 C 1.37935 * 119.85380 * 180.30105 * 17 16 14 19 19 C 1.38387 * 120.14188 * 359.44226 * 18 17 16 20 20 C 1.38340 * 120.29233 * 0.56179 * 19 18 17 21 21 C 1.37983 * 120.14507 * 359.72158 * 20 19 18 22 22 S 1.76195 * 120.07510 * 179.97438 * 21 20 19 23 23 O 1.42099 * 104.27907 * 2.99389 * 22 21 20 24 24 O 1.42100 * 104.27739 * 130.85282 * 22 21 20 25 25 C 1.81398 * 104.44725 * 246.92290 * 22 21 20 26 26 C 1.52999 * 109.47439 * 64.92019 * 25 22 21 27 27 C 1.53005 * 109.47028 * 184.92229 * 25 22 21 28 28 H 1.08998 * 109.47056 * 60.00217 * 1 2 3 29 29 H 1.09006 * 109.46738 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47269 * 299.99812 * 1 2 3 31 31 H 1.09002 * 109.47672 * 240.00006 * 2 1 3 32 32 H 1.08998 * 109.47056 * 119.99783 * 2 1 3 33 33 H 0.96994 * 120.00124 * 180.02562 * 8 7 5 34 34 H 0.97004 * 119.99883 * 94.99898 * 13 3 2 35 35 H 1.08004 * 120.07687 * 0.02704 * 17 16 14 36 36 H 1.07996 * 119.93424 * 179.72720 * 18 17 16 37 37 H 1.07993 * 119.85435 * 180.29853 * 19 18 17 38 38 H 1.07996 * 119.92693 * 179.69432 * 20 19 18 39 39 H 1.09005 * 109.47519 * 304.92261 * 25 22 21 40 40 H 1.09004 * 109.46969 * 55.00823 * 26 25 22 41 41 H 1.09000 * 109.47568 * 175.00777 * 26 25 22 42 42 H 1.08997 * 109.46874 * 295.01546 * 26 25 22 43 43 H 1.08991 * 109.47066 * 60.00258 * 27 25 22 44 44 H 1.09004 * 109.46830 * 180.02562 * 27 25 22 45 45 H 1.09003 * 109.46569 * 299.99713 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8785 -1.2278 8 7 3.4063 0.3375 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5548 -0.3501 -0.7600 11 1 6.3830 0.9225 -2.8171 12 1 6.5569 2.0740 -0.6900 13 7 1.6523 2.0976 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3411 2.6325 0.4320 16 6 0.0440 3.3259 2.6301 17 6 0.8792 3.2548 3.7463 18 6 0.5057 3.8689 4.9235 19 6 -0.6887 4.5641 4.9962 20 6 -1.5210 4.6383 3.8936 21 6 -1.1619 4.0235 2.7117 22 16 -2.2237 4.1186 1.3088 23 8 -3.2951 4.9487 1.7358 24 8 -1.3670 4.5164 0.2472 25 6 -2.7979 2.4161 1.0595 26 6 -3.6469 1.9837 2.2567 27 6 -3.6400 2.3434 -0.2158 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8294 -0.0610 -2.9498 34 1 2.2718 2.1232 1.9978 35 1 1.8138 2.7165 3.6896 36 1 1.1488 3.8110 5.7892 37 1 -0.9743 5.0472 5.9188 38 1 -2.4541 5.1782 3.9583 39 1 -1.9381 1.7527 0.9655 40 1 -4.4568 2.6981 2.4047 41 1 -4.0647 0.9948 2.0676 42 1 -3.0241 1.9502 3.1506 43 1 -3.0352 2.6514 -1.0686 44 1 -3.9854 1.3204 -0.3653 45 1 -4.4999 3.0067 -0.1216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183932701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:05 Heat of formation + Delta-G solvation = -96.667770 kcal Electronic energy + Delta-G solvation = -29306.026468 eV Core-core repulsion = 25415.384973 eV Total energy + Delta-G solvation = -3890.641495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45171 -39.51515 -38.04009 -36.99498 -36.81316 -35.82953 -34.46000 -33.23922 -32.36715 -31.77891 -28.93966 -28.25165 -25.60567 -24.59001 -24.26733 -23.22653 -22.18407 -21.20382 -20.02088 -19.48006 -18.49571 -17.74731 -17.42163 -17.27369 -16.83746 -16.60628 -16.42499 -15.92056 -15.61515 -15.50504 -15.19613 -14.66869 -14.57548 -14.24456 -14.16802 -14.02023 -13.65113 -13.44513 -13.38668 -13.19561 -13.15173 -13.00746 -12.96862 -12.79218 -12.64807 -12.59629 -12.36021 -12.34336 -12.14458 -11.85926 -11.79437 -11.53517 -11.09952 -11.04343 -10.74776 -10.51939 -10.39798 -10.12195 -9.62782 -8.16013 -6.32849 -0.80066 -0.45784 0.04114 1.43918 1.45667 1.55180 1.83669 1.98090 2.28554 2.49706 2.59250 2.94587 3.14096 3.32912 3.63516 3.69667 3.73288 3.90520 4.03079 4.25652 4.31598 4.35359 4.50654 4.53710 4.58378 4.60546 4.67250 4.71776 4.75461 4.79206 4.96151 4.98101 5.07903 5.12589 5.14708 5.19760 5.27376 5.31178 5.46075 5.55676 5.59884 5.75037 5.80885 5.91048 6.17845 6.73288 6.82731 7.29037 7.44601 8.89229 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.004283 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.312081 B = 6535.339276 C = 7566.533691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.277 3.723 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.688 5.688 14 C 0.514 3.486 15 O -0.544 6.544 16 C -0.061 4.061 17 C -0.109 4.109 18 C -0.063 4.063 19 C -0.108 4.108 20 C -0.043 4.043 21 C -0.625 4.625 22 S 2.496 3.504 23 O -0.978 6.978 24 O -0.967 6.967 25 C -0.551 4.551 26 C -0.143 4.143 27 C -0.144 4.144 28 H 0.031 0.969 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.152 0.848 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.351 2.704 17.998 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.192 1.192 13 N -0.336 5.336 14 C 0.300 3.700 15 O -0.426 6.426 16 C -0.065 4.065 17 C -0.129 4.129 18 C -0.081 4.081 19 C -0.126 4.126 20 C -0.061 4.061 21 C -0.714 4.714 22 S 2.681 3.319 23 O -0.975 6.975 24 O -0.965 6.965 25 C -0.664 4.664 26 C -0.201 4.201 27 C -0.202 4.202 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.170 0.830 36 H 0.197 0.803 37 H 0.195 0.805 38 H 0.176 0.824 39 H 0.167 0.833 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.120 0.880 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.021 3.341 16.668 20.259 hybrid contribution 1.719 -0.588 -0.230 1.831 sum -9.302 2.753 16.438 19.087 Atomic orbital electron populations 1.21779 0.96741 0.99505 1.00666 1.21769 0.94126 0.98533 1.01475 1.18487 0.93753 0.89451 0.80908 0.97885 1.21557 0.91414 1.38990 1.06813 0.91134 1.25719 1.03115 0.94435 0.94989 1.70039 1.36960 1.38263 1.09802 0.85405 0.79363 0.78831 0.77084 1.19430 1.21466 1.19163 1.46092 1.14661 1.54926 1.17953 1.18890 0.83608 0.79655 0.87800 1.90746 1.51273 1.59657 1.40953 1.19712 0.94872 0.97535 0.94338 1.21808 0.99383 0.99354 0.92326 1.21917 0.96239 0.92263 0.97653 1.21978 0.93657 0.97700 0.99308 1.21307 1.00477 0.93924 0.90424 1.30504 1.11045 1.10988 1.18845 1.05268 0.73933 0.78538 0.74173 1.93440 1.55939 1.65641 1.82475 1.93570 1.65948 1.81806 1.55131 1.30064 1.10499 1.20646 1.05237 1.21793 0.99592 1.04823 0.93931 1.21677 0.98901 1.06097 0.93545 0.94940 0.93379 0.93180 0.90944 0.93839 0.92623 0.76035 0.83019 0.80348 0.80456 0.82424 0.83257 0.89988 0.88541 0.90691 0.92702 0.87956 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 8.45 71.98 0.61 -4.78 16 2 C -0.12 -5.65 5.45 30.60 0.17 -5.48 16 3 C 0.28 13.91 2.24 44.25 0.10 14.01 16 4 H 0.00 0.20 7.58 -2.39 -0.02 0.18 16 5 C -0.55 -28.66 8.73 25.60 0.22 -28.44 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -51.69 11.30 21.45 0.24 -51.45 16 9 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 N -0.69 -27.83 4.97 -448.97 -2.23 -30.06 16 14 C 0.51 20.33 5.95 86.79 0.52 20.85 16 15 O -0.54 -24.35 6.48 20.05 0.13 -24.22 16 16 C -0.06 -1.88 5.86 -20.09 -0.12 -2.00 16 17 C -0.11 -2.41 9.53 22.52 0.21 -2.20 16 18 C -0.06 -0.92 10.03 22.23 0.22 -0.70 16 19 C -0.11 -1.59 10.04 22.33 0.22 -1.36 16 20 C -0.04 -0.94 9.49 22.23 0.21 -0.73 16 21 C -0.63 -18.68 5.20 22.53 0.12 -18.56 16 22 S 2.50 86.61 4.00 -56.49 -0.23 86.38 16 23 O -0.98 -33.70 16.33 -127.65 -2.08 -35.79 16 24 O -0.97 -44.29 14.86 -118.17 -1.76 -46.05 16 25 C -0.55 -15.85 2.70 30.60 0.08 -15.77 16 26 C -0.14 -2.92 8.99 71.98 0.65 -2.27 16 27 C -0.14 -3.83 9.20 71.98 0.66 -3.17 16 28 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 29 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.05 1.92 4.55 -2.39 -0.01 1.91 16 31 H 0.07 3.86 5.95 -2.39 -0.01 3.85 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 34 H 0.40 13.53 6.61 -92.71 -0.61 12.92 16 35 H 0.15 2.80 6.45 -2.91 -0.02 2.78 16 36 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.16 3.07 7.21 -2.91 -0.02 3.05 16 39 H 0.15 4.86 4.32 -2.39 -0.01 4.85 16 40 H 0.08 1.50 7.85 -2.38 -0.02 1.48 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 1.36 7.87 -2.39 -0.02 1.34 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -76.41 363.20 0.83 -75.58 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.40 Total: 30.98 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 4.33 Total: -49.20 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -1.99 Total: -81.51 kcal Atomic # 8 Polarization: -102.34 SS G_CDS: -3.71 Total: -106.05 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 86.61 SS G_CDS: -0.23 Total: 86.38 kcal Total: -76.41 0.83 -75.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183932701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.088 kcal (2) G-P(sol) polarization free energy of solvation -76.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds