Wall clock time and date at job start Tue Mar 31 2020 23:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46911 * 2 1 4 4 S 1.81395 * 109.46965 * 180.02562 * 3 2 1 5 5 O 1.42108 * 110.54292 * 74.13166 * 4 3 2 6 6 O 1.42095 * 110.54381 * 297.38183 * 4 3 2 7 7 C 1.76199 * 104.45173 * 185.75612 * 4 3 2 8 8 C 1.37979 * 120.07292 * 246.34453 * 7 4 3 9 9 C 1.38343 * 120.14281 * 179.70140 * 8 7 4 10 10 C 1.38375 * 120.29051 * 0.29073 * 9 8 7 11 11 C 1.37933 * 120.14990 * 359.97438 * 10 9 8 12 12 C 1.39555 * 120.07544 * 66.58243 * 7 4 3 13 13 C 1.47850 * 120.14419 * 0.05793 * 12 7 4 14 14 O 1.21552 * 119.99632 * 354.45596 * 13 12 7 15 15 N 1.34776 * 120.00360 * 174.46550 * 13 12 7 16 16 C 1.46492 * 120.00220 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.47491 * 324.99703 * 16 15 13 18 18 C 1.50700 * 109.47246 * 204.99486 * 16 15 13 19 19 H 1.07998 * 119.99871 * 0.02562 * 18 16 15 20 20 C 1.37878 * 120.00182 * 179.97438 * 18 16 15 21 21 N 1.31515 * 120.00129 * 180.02562 * 20 18 16 22 22 Si 1.86800 * 120.00010 * 0.02562 * 20 18 16 23 23 H 1.48497 * 109.47194 * 89.99757 * 22 20 18 24 24 H 1.48500 * 109.47323 * 209.99978 * 22 20 18 25 25 H 1.48508 * 109.47172 * 330.00037 * 22 20 18 26 26 C 1.53005 * 109.47438 * 84.99609 * 16 15 13 27 27 C 1.52999 * 109.46818 * 295.00094 * 26 16 15 28 28 H 1.08989 * 109.47163 * 59.99942 * 1 2 3 29 29 H 1.08997 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46623 * 299.99601 * 1 2 3 31 31 H 1.09003 * 109.46623 * 240.00399 * 2 1 3 32 32 H 1.08995 * 109.47592 * 120.00098 * 2 1 3 33 33 H 1.08995 * 109.46965 * 60.00072 * 3 2 1 34 34 H 1.08999 * 109.46744 * 300.00059 * 3 2 1 35 35 H 1.07995 * 119.93066 * 359.96533 * 8 7 4 36 36 H 1.07997 * 119.85125 * 180.27089 * 9 8 7 37 37 H 1.08006 * 119.92764 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.07843 * 180.02562 * 11 10 9 39 39 H 0.97003 * 119.99709 * 359.97438 * 15 13 12 40 40 H 0.97000 * 119.99859 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.47263 * 54.99768 * 26 16 15 42 42 H 1.08995 * 109.47441 * 175.00240 * 26 16 15 43 43 H 1.09000 * 109.47075 * 179.97438 * 27 26 16 44 44 H 1.08993 * 109.47263 * 299.99646 * 27 26 16 45 45 H 1.09002 * 109.47566 * 60.00188 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 3.8540 1.4426 -0.0008 5 8 4.3521 1.0789 -1.2810 6 8 4.3531 0.8305 1.1804 7 6 4.2938 3.1402 0.1704 8 6 4.9298 3.7973 -0.8628 9 6 5.2702 5.1318 -0.7323 10 6 4.9812 5.8148 0.4359 11 6 4.3505 5.1683 1.4785 12 6 4.0040 3.8219 1.3532 13 6 3.3285 3.1224 2.4669 14 8 2.9340 1.9823 2.3183 15 7 3.1500 3.7488 3.6468 16 6 2.4802 3.0559 4.7501 17 1 1.7004 2.4069 4.3516 18 6 1.8638 4.0695 5.6794 19 1 1.9609 5.1243 5.4690 20 6 1.1749 3.6502 6.7978 21 7 0.6366 4.5347 7.6086 22 14 1.0064 1.8257 7.1614 23 1 2.1468 1.3811 8.0022 24 1 -0.2671 1.5807 7.8849 25 1 1.0055 1.0648 5.8861 26 6 3.5010 2.2141 5.5184 27 6 4.0355 1.1056 4.6092 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.1586 3.2698 -1.7770 36 1 5.7640 5.6426 -1.5456 37 1 5.2499 6.8565 0.5316 38 1 4.1251 5.7026 2.3896 39 1 3.4651 4.6586 3.7654 40 1 0.1516 4.2397 8.3952 41 1 4.3263 2.8489 5.8410 42 1 3.0223 1.7693 6.3907 43 1 4.7630 0.5062 5.1564 44 1 3.2103 0.4708 4.2866 45 1 4.5143 1.5504 3.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183957719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:55 Heat of formation + Delta-G solvation = -70.067835 kcal Electronic energy + Delta-G solvation = -29089.190531 eV Core-core repulsion = 25199.702496 eV Total energy + Delta-G solvation = -3889.488035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.28813 -38.48016 -36.73810 -35.63189 -35.42862 -34.68937 -32.80288 -31.97813 -31.45144 -30.67750 -27.69538 -27.43608 -24.30370 -23.32661 -22.57753 -21.75545 -21.01693 -19.82292 -18.91958 -18.28567 -17.15751 -16.48863 -16.13566 -15.98531 -15.81668 -15.34667 -15.10048 -14.99763 -14.62267 -14.36963 -14.17436 -13.48404 -13.38958 -13.15592 -12.93200 -12.60039 -12.50889 -12.36871 -12.25473 -11.88924 -11.80810 -11.77288 -11.69832 -11.49836 -11.36271 -11.05422 -10.94206 -10.78225 -10.70924 -10.57963 -10.19380 -9.93441 -9.62274 -9.53822 -9.34183 -9.27035 -9.19447 -8.81674 -8.18270 -6.27153 -4.30665 0.25873 0.55533 0.90870 2.87108 3.10092 3.21691 3.32967 3.37677 3.55939 3.66793 4.05217 4.26963 4.37892 4.62118 4.65300 4.73470 4.73967 4.92930 5.07057 5.11528 5.16987 5.24601 5.38224 5.47855 5.61549 5.64931 5.74770 5.83942 5.90723 6.02486 6.06595 6.08198 6.09599 6.11864 6.20291 6.27228 6.53561 6.68579 6.78244 6.88760 7.08434 7.12610 7.33886 7.41801 7.96056 8.36474 8.57113 8.72763 9.32862 10.84570 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.004800 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.831293 B = 5831.361480 C = 7116.393667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.596 4.596 4 S 2.508 3.492 5 O -0.966 6.966 6 O -0.903 6.903 7 C -0.616 4.616 8 C -0.034 4.034 9 C -0.125 4.125 10 C -0.075 4.075 11 C -0.108 4.108 12 C -0.034 4.034 13 C 0.524 3.476 14 O -0.521 6.521 15 N -0.679 5.679 16 C 0.242 3.758 17 H 0.055 0.945 18 C -0.539 4.539 19 H 0.080 0.920 20 C 0.081 3.919 21 N -0.891 5.891 22 Si 0.882 3.118 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.258 1.258 26 C -0.140 4.140 27 C -0.146 4.146 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.396 0.604 40 H 0.268 0.732 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.029 0.971 44 H 0.054 0.946 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -0.295 -17.073 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.726 4.726 4 S 2.687 3.313 5 O -0.963 6.963 6 O -0.900 6.900 7 C -0.701 4.701 8 C -0.053 4.053 9 C -0.144 4.144 10 C -0.093 4.093 11 C -0.127 4.127 12 C -0.038 4.038 13 C 0.309 3.691 14 O -0.403 6.403 15 N -0.326 5.326 16 C 0.139 3.861 17 H 0.073 0.927 18 C -0.577 4.577 19 H 0.098 0.902 20 C -0.123 4.123 21 N -0.527 5.527 22 Si 0.712 3.288 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.182 1.182 26 C -0.179 4.179 27 C -0.203 4.203 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.176 0.824 34 H 0.135 0.865 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.231 0.769 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.590 -1.707 -17.010 17.986 hybrid contribution -0.281 0.680 0.603 0.951 sum 5.309 -1.027 -16.407 17.275 Atomic orbital electron populations 1.21693 0.94116 1.01923 1.02402 1.21184 0.98332 0.92157 1.03194 1.30452 1.23688 1.06331 1.12139 1.05199 0.78263 0.73788 0.74092 1.93503 1.78584 1.81321 1.42875 1.93630 1.77046 1.72789 1.46536 1.30927 1.12619 1.26604 0.99989 1.21010 0.92630 0.94501 0.97177 1.21461 1.00080 0.94590 0.98231 1.21418 0.94951 1.00236 0.92738 1.21553 0.97777 0.93616 0.99760 1.19912 0.96553 0.94384 0.92902 1.18297 0.80946 0.86376 0.83460 1.90767 1.50923 1.16594 1.81967 1.46068 1.57249 1.17447 1.11874 1.19289 0.90521 0.92594 0.83688 0.92723 1.21004 1.35027 0.93945 1.07674 0.90214 1.24810 0.94341 0.97826 0.95358 1.69861 1.34985 1.33941 1.13923 0.86912 0.76669 0.85729 0.79508 1.20166 1.22214 1.18239 1.22311 0.99825 0.97284 0.98448 1.21900 1.00431 0.98512 0.99490 0.92692 0.92271 0.91813 0.91414 0.89647 0.82415 0.86504 0.83457 0.84797 0.84672 0.84282 0.76911 0.92209 0.92419 0.92787 0.95234 0.92684 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.91 37.16 0.37 -1.20 16 2 C -0.11 -1.36 5.94 -26.73 -0.16 -1.52 16 3 C -0.60 -7.71 5.24 37.16 0.19 -7.51 16 4 S 2.51 37.84 4.50 -107.50 -0.48 37.35 16 5 O -0.97 -15.40 16.74 -57.54 -0.96 -16.37 16 6 O -0.90 -16.89 14.64 -67.46 -0.99 -17.88 16 7 C -0.62 -8.66 5.62 -39.19 -0.22 -8.88 16 8 C -0.03 -0.40 9.49 -39.64 -0.38 -0.78 16 9 C -0.12 -1.17 10.04 -39.49 -0.40 -1.57 16 10 C -0.08 -0.71 10.03 -39.64 -0.40 -1.11 16 11 C -0.11 -1.27 9.53 -39.19 -0.37 -1.64 16 12 C -0.03 -0.49 5.86 -104.97 -0.62 -1.11 16 13 C 0.52 9.23 5.94 -12.33 -0.07 9.16 16 14 O -0.52 -9.93 6.24 -19.69 -0.12 -10.06 16 15 N -0.68 -12.60 4.97 -55.88 -0.28 -12.87 16 16 C 0.24 5.43 1.83 -69.08 -0.13 5.31 16 17 H 0.06 1.32 6.63 -51.93 -0.34 0.98 16 18 C -0.54 -13.86 9.31 -34.44 -0.32 -14.18 16 19 H 0.08 2.15 7.98 -52.49 -0.42 1.73 16 20 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 21 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 22 Si 0.88 21.20 24.41 -169.99 -4.15 17.05 16 23 H -0.27 -6.49 6.83 56.52 0.39 -6.10 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 26 C -0.14 -3.08 5.11 -26.73 -0.14 -3.21 16 27 C -0.15 -3.04 8.51 37.16 0.32 -2.73 16 28 H 0.05 0.52 8.14 -51.94 -0.42 0.10 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.16 2.26 5.55 -51.93 -0.29 1.97 16 34 H 0.12 1.17 8.14 -51.92 -0.42 0.75 16 35 H 0.15 1.51 7.21 -52.49 -0.38 1.14 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.14 1.42 6.45 -52.48 -0.34 1.09 16 39 H 0.40 6.39 6.61 -40.82 -0.27 6.12 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 45 H 0.06 1.38 5.42 -51.93 -0.28 1.10 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -33.07 360.21 -9.50 -42.57 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.30 Total: 8.53 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -2.41 Total: -28.89 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.50 Total: -37.73 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -2.07 Total: -44.30 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.15 Total: 17.05 kcal Atomic # 16 Polarization: 37.84 SS G_CDS: -0.48 Total: 37.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.07 -9.50 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183957719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.499 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds