Wall clock time and date at job start Tue Mar 31 2020 23:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46911 * 2 1 4 4 S 1.81395 * 109.46965 * 180.02562 * 3 2 1 5 5 O 1.42108 * 110.54292 * 74.13166 * 4 3 2 6 6 O 1.42095 * 110.54381 * 297.38183 * 4 3 2 7 7 C 1.76199 * 104.45173 * 185.75612 * 4 3 2 8 8 C 1.37979 * 120.07292 * 246.34453 * 7 4 3 9 9 C 1.38343 * 120.14281 * 179.70140 * 8 7 4 10 10 C 1.38375 * 120.29051 * 0.29073 * 9 8 7 11 11 C 1.37933 * 120.14990 * 359.97438 * 10 9 8 12 12 C 1.39555 * 120.07544 * 66.58243 * 7 4 3 13 13 C 1.47850 * 120.14419 * 0.05793 * 12 7 4 14 14 O 1.21552 * 119.99632 * 354.45596 * 13 12 7 15 15 N 1.34776 * 120.00360 * 174.46550 * 13 12 7 16 16 C 1.46492 * 120.00220 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.47491 * 324.99703 * 16 15 13 18 18 C 1.50700 * 109.47246 * 204.99486 * 16 15 13 19 19 H 1.07998 * 119.99871 * 0.02562 * 18 16 15 20 20 C 1.37878 * 120.00182 * 179.97438 * 18 16 15 21 21 N 1.31515 * 120.00129 * 180.02562 * 20 18 16 22 22 Si 1.86800 * 120.00010 * 0.02562 * 20 18 16 23 23 H 1.48497 * 109.47194 * 89.99757 * 22 20 18 24 24 H 1.48500 * 109.47323 * 209.99978 * 22 20 18 25 25 H 1.48508 * 109.47172 * 330.00037 * 22 20 18 26 26 C 1.53005 * 109.47438 * 84.99609 * 16 15 13 27 27 C 1.52999 * 109.46818 * 295.00094 * 26 16 15 28 28 H 1.08989 * 109.47163 * 59.99942 * 1 2 3 29 29 H 1.08997 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46623 * 299.99601 * 1 2 3 31 31 H 1.09003 * 109.46623 * 240.00399 * 2 1 3 32 32 H 1.08995 * 109.47592 * 120.00098 * 2 1 3 33 33 H 1.08995 * 109.46965 * 60.00072 * 3 2 1 34 34 H 1.08999 * 109.46744 * 300.00059 * 3 2 1 35 35 H 1.07995 * 119.93066 * 359.96533 * 8 7 4 36 36 H 1.07997 * 119.85125 * 180.27089 * 9 8 7 37 37 H 1.08006 * 119.92764 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.07843 * 180.02562 * 11 10 9 39 39 H 0.97003 * 119.99709 * 359.97438 * 15 13 12 40 40 H 0.97000 * 119.99859 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.47263 * 54.99768 * 26 16 15 42 42 H 1.08995 * 109.47441 * 175.00240 * 26 16 15 43 43 H 1.09000 * 109.47075 * 179.97438 * 27 26 16 44 44 H 1.08993 * 109.47263 * 299.99646 * 27 26 16 45 45 H 1.09002 * 109.47566 * 60.00188 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 3.8540 1.4426 -0.0008 5 8 4.3521 1.0789 -1.2810 6 8 4.3531 0.8305 1.1804 7 6 4.2938 3.1402 0.1704 8 6 4.9298 3.7973 -0.8628 9 6 5.2702 5.1318 -0.7323 10 6 4.9812 5.8148 0.4359 11 6 4.3505 5.1683 1.4785 12 6 4.0040 3.8219 1.3532 13 6 3.3285 3.1224 2.4669 14 8 2.9340 1.9823 2.3183 15 7 3.1500 3.7488 3.6468 16 6 2.4802 3.0559 4.7501 17 1 1.7004 2.4069 4.3516 18 6 1.8638 4.0695 5.6794 19 1 1.9609 5.1243 5.4690 20 6 1.1749 3.6502 6.7978 21 7 0.6366 4.5347 7.6086 22 14 1.0064 1.8257 7.1614 23 1 2.1468 1.3811 8.0022 24 1 -0.2671 1.5807 7.8849 25 1 1.0055 1.0648 5.8861 26 6 3.5010 2.2141 5.5184 27 6 4.0355 1.1056 4.6092 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.1586 3.2698 -1.7770 36 1 5.7640 5.6426 -1.5456 37 1 5.2499 6.8565 0.5316 38 1 4.1251 5.7026 2.3896 39 1 3.4651 4.6586 3.7654 40 1 0.1516 4.2397 8.3952 41 1 4.3263 2.8489 5.8410 42 1 3.0223 1.7693 6.3907 43 1 4.7630 0.5062 5.1564 44 1 3.2103 0.4708 4.2866 45 1 4.5143 1.5504 3.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183957719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:53 Heat of formation + Delta-G solvation = -92.796833 kcal Electronic energy + Delta-G solvation = -29090.176134 eV Core-core repulsion = 25199.702496 eV Total energy + Delta-G solvation = -3890.473638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.51845 -39.56906 -38.02873 -37.10246 -36.77520 -35.69727 -34.51767 -33.63615 -32.36913 -31.87242 -29.40478 -28.53564 -25.53905 -24.39653 -24.17206 -22.74789 -22.45158 -21.36317 -20.11395 -19.54787 -18.62168 -17.81810 -17.62855 -17.11931 -17.09515 -16.70612 -16.48211 -15.97692 -15.75825 -15.59802 -15.44715 -15.08147 -14.65917 -14.39741 -14.26510 -13.88758 -13.71638 -13.61261 -13.50492 -13.40171 -13.21739 -12.98517 -12.86746 -12.81111 -12.71296 -12.59292 -12.34050 -12.29805 -11.86637 -11.85666 -11.71933 -11.34583 -11.27249 -11.21172 -10.86173 -10.78885 -10.42285 -10.13960 -9.75766 -8.37958 -6.43029 -0.79882 -0.47283 0.02489 1.28496 1.36123 1.45664 1.78912 1.99681 2.24997 2.26736 2.55694 2.95121 2.98743 3.34594 3.61887 3.69133 3.72815 3.91598 4.02588 4.22538 4.26776 4.28074 4.31922 4.36276 4.48421 4.52364 4.53600 4.72881 4.74671 4.78319 4.88939 4.94592 5.04293 5.09155 5.12884 5.14148 5.16589 5.26842 5.30299 5.31999 5.40917 5.60234 5.61644 5.73823 6.11279 6.57673 6.73027 7.15097 7.31281 8.76790 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.004800 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.831293 B = 5831.361480 C = 7116.393667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.585 4.585 4 S 2.505 3.495 5 O -0.981 6.981 6 O -0.950 6.950 7 C -0.627 4.627 8 C -0.044 4.044 9 C -0.108 4.108 10 C -0.066 4.066 11 C -0.110 4.110 12 C -0.060 4.060 13 C 0.521 3.479 14 O -0.538 6.538 15 N -0.684 5.684 16 C 0.251 3.749 17 H 0.036 0.964 18 C -0.531 4.531 19 H 0.061 0.939 20 C 0.035 3.965 21 N -0.932 5.932 22 Si 0.930 3.070 23 H -0.266 1.266 24 H -0.294 1.294 25 H -0.256 1.256 26 C -0.138 4.138 27 C -0.136 4.136 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.176 0.824 38 H 0.150 0.850 39 H 0.406 0.594 40 H 0.270 0.730 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.455 0.752 -19.327 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.717 4.717 4 S 2.689 3.311 5 O -0.979 6.979 6 O -0.947 6.947 7 C -0.714 4.714 8 C -0.063 4.063 9 C -0.127 4.127 10 C -0.083 4.083 11 C -0.130 4.130 12 C -0.063 4.063 13 C 0.308 3.692 14 O -0.420 6.420 15 N -0.333 5.333 16 C 0.147 3.853 17 H 0.054 0.946 18 C -0.569 4.569 19 H 0.079 0.921 20 C -0.165 4.165 21 N -0.571 5.571 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.222 1.222 25 H -0.180 1.180 26 C -0.177 4.177 27 C -0.193 4.193 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.194 0.806 37 H 0.193 0.807 38 H 0.167 0.833 39 H 0.243 0.757 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.676 -0.681 -19.291 20.425 hybrid contribution -0.571 0.484 1.157 1.378 sum 6.105 -0.197 -18.135 19.136 Atomic orbital electron populations 1.21710 0.92851 1.02970 1.02548 1.21319 0.99509 0.91790 1.03251 1.30324 1.21431 1.07026 1.12953 1.04900 0.79024 0.74201 0.72954 1.93470 1.79430 1.82109 1.42854 1.93570 1.78518 1.74536 1.48061 1.30625 1.14295 1.25676 1.00838 1.21321 0.92297 0.95808 0.96861 1.21976 0.98095 0.93453 0.99176 1.21901 0.92953 1.01926 0.91549 1.21815 0.97505 0.92475 1.01160 1.19630 0.98882 0.95678 0.92159 1.18788 0.80439 0.86289 0.83687 1.90765 1.51358 1.17530 1.82338 1.45811 1.57906 1.17971 1.11591 1.18878 0.90564 0.91703 0.84196 0.94650 1.21237 1.34110 0.93835 1.07684 0.92132 1.25452 0.94463 1.01048 0.95577 1.69960 1.36623 1.35634 1.14833 0.86139 0.76804 0.81880 0.79451 1.19190 1.22170 1.17992 1.22252 0.99735 0.97591 0.98099 1.21781 1.00235 0.98051 0.99237 0.90844 0.90867 0.93327 0.89590 0.91522 0.83849 0.83322 0.82367 0.80646 0.80672 0.83253 0.75693 0.92114 0.91675 0.93785 0.93509 0.93957 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.91 71.98 0.71 -2.27 16 2 C -0.12 -2.95 5.94 30.60 0.18 -2.76 16 3 C -0.59 -14.99 5.24 71.98 0.38 -14.61 16 4 S 2.51 75.93 4.50 -56.49 -0.25 75.68 16 5 O -0.98 -30.93 16.74 -127.65 -2.14 -33.07 16 6 O -0.95 -36.78 14.64 -118.17 -1.73 -38.51 16 7 C -0.63 -16.95 5.62 22.53 0.13 -16.83 16 8 C -0.04 -0.91 9.49 22.23 0.21 -0.70 16 9 C -0.11 -1.53 10.04 22.33 0.22 -1.31 16 10 C -0.07 -0.95 10.03 22.23 0.22 -0.73 16 11 C -0.11 -2.34 9.53 22.53 0.21 -2.12 16 12 C -0.06 -1.70 5.86 -20.09 -0.12 -1.81 16 13 C 0.52 18.51 5.94 86.79 0.52 19.03 16 14 O -0.54 -21.07 6.24 20.04 0.13 -20.95 16 15 N -0.68 -25.56 4.97 -448.98 -2.23 -27.79 16 16 C 0.25 11.41 1.83 44.25 0.08 11.49 16 17 H 0.04 1.76 6.63 -2.39 -0.02 1.74 16 18 C -0.53 -27.77 9.31 25.60 0.24 -27.53 16 19 H 0.06 3.34 7.98 -2.91 -0.02 3.31 16 20 C 0.03 1.91 5.45 84.65 0.46 2.37 16 21 N -0.93 -54.62 13.96 21.45 0.30 -54.32 16 22 Si 0.93 44.12 24.41 68.60 1.67 45.80 16 23 H -0.27 -12.14 6.83 99.48 0.68 -11.46 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.26 -11.93 6.53 99.48 0.65 -11.28 16 26 C -0.14 -6.05 5.11 30.60 0.16 -5.89 16 27 C -0.14 -5.66 8.51 71.98 0.61 -5.04 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.14 4.20 5.55 -2.39 -0.01 4.19 16 34 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.16 2.84 7.21 -2.91 -0.02 2.82 16 36 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 38 H 0.15 2.75 6.45 -2.91 -0.02 2.73 16 39 H 0.41 13.10 6.61 -92.71 -0.61 12.49 16 40 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.04 2.01 3.22 -2.39 -0.01 2.00 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 44 H 0.04 1.84 7.84 -2.39 -0.02 1.82 16 45 H 0.06 2.63 5.42 -2.39 -0.01 2.62 16 Total: -1.00 -73.58 360.21 0.28 -73.30 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.32 Total: 28.58 kcal Atomic # 6 Polarization: -52.94 SS G_CDS: 4.22 Total: -48.72 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -1.93 Total: -82.11 kcal Atomic # 8 Polarization: -88.78 SS G_CDS: -3.74 Total: -92.53 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.67 Total: 45.80 kcal Atomic # 16 Polarization: 75.93 SS G_CDS: -0.25 Total: 75.68 kcal Total: -73.58 0.28 -73.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183957719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.501 kcal (2) G-P(sol) polarization free energy of solvation -73.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds