Wall clock time and date at job start Tue Mar 31 2020 23:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47332 * 2 1 4 4 S 1.81398 * 109.47527 * 179.97438 * 3 2 1 5 5 O 1.42099 * 110.54034 * 68.37884 * 4 3 2 6 6 O 1.42098 * 110.54332 * 291.62862 * 4 3 2 7 7 C 1.76199 * 104.45286 * 180.02562 * 4 3 2 8 8 C 1.37978 * 120.07343 * 114.97704 * 7 4 3 9 9 C 1.38340 * 120.14468 * 180.02562 * 8 7 4 10 10 C 1.38381 * 120.29287 * 359.97438 * 9 8 7 11 11 C 1.37940 * 120.14570 * 359.74671 * 10 9 8 12 12 C 1.39557 * 120.07396 * 295.00372 * 7 4 3 13 13 C 1.47849 * 120.14343 * 359.95388 * 12 7 4 14 14 O 1.21553 * 119.99954 * 359.97438 * 13 12 7 15 15 N 1.34777 * 119.99699 * 180.27372 * 13 12 7 16 16 C 1.46505 * 119.99724 * 179.72334 * 15 13 12 17 17 H 1.09002 * 109.47181 * 34.99973 * 16 15 13 18 18 C 1.50696 * 109.46982 * 155.00323 * 16 15 13 19 19 H 1.07998 * 120.00244 * 359.97438 * 18 16 15 20 20 C 1.37881 * 119.99729 * 179.97438 * 18 16 15 21 21 N 1.31506 * 120.00366 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99757 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47157 * 90.00095 * 22 20 18 24 24 H 1.48504 * 109.47035 * 210.00268 * 22 20 18 25 25 H 1.48502 * 109.46999 * 330.00079 * 22 20 18 26 26 C 1.53008 * 109.46864 * 275.00347 * 16 15 13 27 27 C 1.52990 * 109.47287 * 65.00230 * 26 16 15 28 28 H 1.08995 * 109.47160 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46935 * 299.99859 * 1 2 3 30 30 H 1.08995 * 109.47385 * 59.99546 * 1 2 3 31 31 H 1.09000 * 109.47150 * 240.00603 * 2 1 3 32 32 H 1.09004 * 109.47433 * 120.00258 * 2 1 3 33 33 H 1.09004 * 109.46996 * 60.00178 * 3 2 1 34 34 H 1.08995 * 109.47256 * 300.00533 * 3 2 1 35 35 H 1.07999 * 119.92778 * 0.04862 * 8 7 4 36 36 H 1.07997 * 119.85623 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.93162 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.07471 * 180.25076 * 11 10 9 39 39 H 0.97000 * 120.00483 * 359.72766 * 15 13 12 40 40 H 0.97000 * 120.00380 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.46467 * 185.00487 * 26 16 15 42 42 H 1.09001 * 109.46674 * 304.99544 * 26 16 15 43 43 H 1.08999 * 109.47385 * 180.02562 * 27 26 16 44 44 H 1.09005 * 109.47146 * 299.99374 * 27 26 16 45 45 H 1.08998 * 109.47315 * 59.99464 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3531 0.9520 -1.2360 6 8 4.3522 0.9523 1.2380 7 6 4.2937 3.1488 0.0015 8 6 4.9541 3.6922 1.0843 9 6 5.2995 5.0317 1.0866 10 6 4.9863 5.8352 0.0044 11 6 4.3315 5.3032 -1.0869 12 6 3.9744 3.9537 -1.0929 13 6 3.2673 3.3780 -2.2568 14 8 2.9632 2.2011 -2.2620 15 7 2.9652 4.1568 -3.3145 16 6 2.2700 3.5850 -4.4703 17 1 1.5660 2.8249 -4.1314 18 6 1.5228 4.6739 -5.1962 19 1 1.5615 5.6901 -4.8328 20 6 0.7896 4.3727 -6.3245 21 7 0.7420 3.1351 -6.7668 22 14 -0.1360 5.7226 -7.2247 23 1 0.7448 6.3215 -8.2594 24 1 -1.3420 5.1480 -7.8735 25 1 -0.5467 6.7713 -6.2569 26 6 3.2908 2.9490 -5.4162 27 6 3.9615 1.7632 -4.7200 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 5.2021 3.0703 1.9317 36 1 5.8159 5.4523 1.9368 37 1 5.2584 6.8803 0.0126 38 1 4.0912 5.9304 -1.9326 39 1 3.2082 5.0959 -3.3105 40 1 0.2266 2.9233 -7.5608 41 1 2.7846 2.6026 -6.3172 42 1 4.0462 3.6874 -5.6850 43 1 4.6891 1.3104 -5.3936 44 1 4.4678 2.1097 -3.8190 45 1 3.2060 1.0249 -4.4511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183957737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:58 Heat of formation + Delta-G solvation = -77.176921 kcal Electronic energy + Delta-G solvation = -28942.246818 eV Core-core repulsion = 25052.450509 eV Total energy + Delta-G solvation = -3889.796308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.14778 -38.34090 -36.61798 -35.49000 -35.22386 -34.60236 -32.78074 -31.65061 -31.35740 -30.36008 -27.53681 -27.03048 -24.22398 -23.27152 -22.81290 -21.67391 -20.63300 -19.52884 -18.81935 -18.17469 -17.00328 -16.34263 -15.92246 -15.87875 -15.71397 -15.04009 -14.93082 -14.91936 -14.57819 -14.34637 -14.07828 -13.37876 -13.26054 -12.97003 -12.69267 -12.52916 -12.43177 -12.22509 -11.98382 -11.72776 -11.61476 -11.53173 -11.39750 -11.26154 -11.24485 -11.05359 -10.87362 -10.74158 -10.62563 -10.34531 -10.15081 -10.08794 -9.58946 -9.47313 -9.26754 -9.12367 -9.08370 -8.55699 -7.94298 -6.18383 -4.28825 0.34641 0.63907 0.97186 2.96672 3.19388 3.19616 3.26965 3.28086 3.70960 3.80643 4.12312 4.29484 4.47358 4.69004 4.71053 4.80219 4.82557 5.00875 5.12920 5.20101 5.24291 5.33511 5.44974 5.55604 5.68638 5.72386 5.82924 5.91764 5.96433 6.11604 6.13104 6.15521 6.28993 6.48690 6.57876 6.60211 6.75264 7.10017 7.24313 7.27353 7.42990 7.57976 7.65586 7.83468 8.13254 8.44139 8.63263 8.88160 9.38054 10.86525 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.004351 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.100237 B = 6433.745959 C = 7560.138234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.599 4.599 4 S 2.508 3.492 5 O -0.899 6.899 6 O -0.967 6.967 7 C -0.617 4.617 8 C -0.034 4.034 9 C -0.127 4.127 10 C -0.077 4.077 11 C -0.110 4.110 12 C -0.032 4.032 13 C 0.517 3.483 14 O -0.516 6.516 15 N -0.687 5.687 16 C 0.270 3.730 17 H 0.055 0.945 18 C -0.538 4.538 19 H 0.061 0.939 20 C 0.069 3.931 21 N -0.878 5.878 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.129 4.129 27 C -0.139 4.139 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.389 0.611 40 H 0.265 0.735 41 H 0.099 0.901 42 H 0.030 0.970 43 H 0.020 0.980 44 H 0.048 0.952 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 2.641 15.083 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.729 4.729 4 S 2.687 3.313 5 O -0.896 6.896 6 O -0.964 6.964 7 C -0.702 4.702 8 C -0.053 4.053 9 C -0.146 4.146 10 C -0.095 4.095 11 C -0.129 4.129 12 C -0.036 4.036 13 C 0.302 3.698 14 O -0.397 6.397 15 N -0.334 5.334 16 C 0.169 3.831 17 H 0.073 0.927 18 C -0.577 4.577 19 H 0.079 0.921 20 C -0.135 4.135 21 N -0.515 5.515 22 Si 0.728 3.272 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.167 4.167 27 C -0.196 4.196 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.178 0.822 35 H 0.165 0.835 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.223 0.777 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.048 0.952 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.766 1.041 14.856 15.637 hybrid contribution -0.669 2.286 -0.573 2.450 sum 4.097 3.326 14.283 15.227 Atomic orbital electron populations 1.21692 0.94087 1.01902 1.02452 1.21190 0.98396 0.92189 1.03142 1.30496 1.23833 1.06275 1.12339 1.05203 0.78251 0.73664 0.74230 1.93652 1.76940 1.76659 1.42345 1.93493 1.78589 1.78009 1.46334 1.30962 1.12338 1.26401 1.00488 1.21005 0.92685 0.95539 0.96089 1.21438 1.00273 0.93929 0.98951 1.21397 0.95093 1.00163 0.92806 1.21526 0.98044 0.94307 0.99052 1.20038 0.96144 0.94048 0.93337 1.18325 0.81143 0.86959 0.83353 1.90805 1.53835 1.14421 1.80613 1.46450 1.56712 1.12298 1.17897 1.18943 0.89746 0.94242 0.80215 0.92692 1.21185 1.30728 0.94395 1.11368 0.92122 1.24861 0.96151 0.95696 0.96768 1.69889 1.40290 1.17631 1.23733 0.86466 0.79348 0.81585 0.79795 1.20527 1.21038 1.19914 1.21961 0.97401 0.95588 1.01794 1.21848 0.99568 0.99173 0.99049 0.92278 0.92731 0.91722 0.89862 0.91268 0.86537 0.82209 0.83496 0.84889 0.84818 0.84468 0.77685 0.92459 0.88246 0.95163 0.96064 0.93294 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.91 37.16 0.37 -1.30 16 2 C -0.11 -1.45 5.94 -26.73 -0.16 -1.61 16 3 C -0.60 -8.33 5.32 37.16 0.20 -8.13 16 4 S 2.51 40.21 4.50 -107.50 -0.48 39.73 16 5 O -0.90 -18.00 14.84 -67.50 -1.00 -19.00 16 6 O -0.97 -16.13 16.74 -57.54 -0.96 -17.09 16 7 C -0.62 -9.20 5.61 -39.18 -0.22 -9.42 16 8 C -0.03 -0.42 9.49 -39.64 -0.38 -0.80 16 9 C -0.13 -1.27 10.04 -39.49 -0.40 -1.66 16 10 C -0.08 -0.76 10.03 -39.64 -0.40 -1.16 16 11 C -0.11 -1.36 9.54 -39.18 -0.37 -1.73 16 12 C -0.03 -0.49 5.86 -104.97 -0.62 -1.11 16 13 C 0.52 9.67 5.92 -12.33 -0.07 9.60 16 14 O -0.52 -10.59 6.20 -19.80 -0.12 -10.71 16 15 N -0.69 -13.32 4.97 -55.87 -0.28 -13.59 16 16 C 0.27 6.40 2.24 -69.08 -0.15 6.24 16 17 H 0.06 1.48 7.58 -51.93 -0.39 1.09 16 18 C -0.54 -13.46 8.73 -34.44 -0.30 -13.76 16 19 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 21 N -0.88 -23.74 11.29 55.43 0.63 -23.11 16 22 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 26 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 27 C -0.14 -3.18 8.51 37.15 0.32 -2.87 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 1.27 8.14 -51.92 -0.42 0.85 16 34 H 0.16 2.51 5.42 -51.93 -0.28 2.22 16 35 H 0.15 1.61 7.21 -52.49 -0.38 1.23 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.14 1.46 6.41 -52.49 -0.34 1.12 16 39 H 0.39 6.47 6.57 -40.82 -0.27 6.20 16 40 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 1.12 5.64 -51.93 -0.29 0.82 16 45 H 0.05 1.27 7.84 -51.93 -0.41 0.87 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -31.98 367.22 -10.57 -42.55 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.44 Total: 10.09 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: -2.42 Total: -29.24 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.35 Total: -36.70 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -2.09 Total: -46.80 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 40.21 SS G_CDS: -0.48 Total: 39.73 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.98 -10.57 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183957737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.629 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds