Wall clock time and date at job start Tue Mar 31 2020 23:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47332 * 2 1 4 4 S 1.81398 * 109.47527 * 179.97438 * 3 2 1 5 5 O 1.42099 * 110.54034 * 68.37884 * 4 3 2 6 6 O 1.42098 * 110.54332 * 291.62862 * 4 3 2 7 7 C 1.76199 * 104.45286 * 180.02562 * 4 3 2 8 8 C 1.37978 * 120.07343 * 114.97704 * 7 4 3 9 9 C 1.38340 * 120.14468 * 180.02562 * 8 7 4 10 10 C 1.38381 * 120.29287 * 359.97438 * 9 8 7 11 11 C 1.37940 * 120.14570 * 359.74671 * 10 9 8 12 12 C 1.39557 * 120.07396 * 295.00372 * 7 4 3 13 13 C 1.47849 * 120.14343 * 359.95388 * 12 7 4 14 14 O 1.21553 * 119.99954 * 359.97438 * 13 12 7 15 15 N 1.34777 * 119.99699 * 180.27372 * 13 12 7 16 16 C 1.46505 * 119.99724 * 179.72334 * 15 13 12 17 17 H 1.09002 * 109.47181 * 34.99973 * 16 15 13 18 18 C 1.50696 * 109.46982 * 155.00323 * 16 15 13 19 19 H 1.07998 * 120.00244 * 359.97438 * 18 16 15 20 20 C 1.37881 * 119.99729 * 179.97438 * 18 16 15 21 21 N 1.31506 * 120.00366 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99757 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47157 * 90.00095 * 22 20 18 24 24 H 1.48504 * 109.47035 * 210.00268 * 22 20 18 25 25 H 1.48502 * 109.46999 * 330.00079 * 22 20 18 26 26 C 1.53008 * 109.46864 * 275.00347 * 16 15 13 27 27 C 1.52990 * 109.47287 * 65.00230 * 26 16 15 28 28 H 1.08995 * 109.47160 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46935 * 299.99859 * 1 2 3 30 30 H 1.08995 * 109.47385 * 59.99546 * 1 2 3 31 31 H 1.09000 * 109.47150 * 240.00603 * 2 1 3 32 32 H 1.09004 * 109.47433 * 120.00258 * 2 1 3 33 33 H 1.09004 * 109.46996 * 60.00178 * 3 2 1 34 34 H 1.08995 * 109.47256 * 300.00533 * 3 2 1 35 35 H 1.07999 * 119.92778 * 0.04862 * 8 7 4 36 36 H 1.07997 * 119.85623 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.93162 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.07471 * 180.25076 * 11 10 9 39 39 H 0.97000 * 120.00483 * 359.72766 * 15 13 12 40 40 H 0.97000 * 120.00380 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.46467 * 185.00487 * 26 16 15 42 42 H 1.09001 * 109.46674 * 304.99544 * 26 16 15 43 43 H 1.08999 * 109.47385 * 180.02562 * 27 26 16 44 44 H 1.09005 * 109.47146 * 299.99374 * 27 26 16 45 45 H 1.08998 * 109.47315 * 59.99464 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3531 0.9520 -1.2360 6 8 4.3522 0.9523 1.2380 7 6 4.2937 3.1488 0.0015 8 6 4.9541 3.6922 1.0843 9 6 5.2995 5.0317 1.0866 10 6 4.9863 5.8352 0.0044 11 6 4.3315 5.3032 -1.0869 12 6 3.9744 3.9537 -1.0929 13 6 3.2673 3.3780 -2.2568 14 8 2.9632 2.2011 -2.2620 15 7 2.9652 4.1568 -3.3145 16 6 2.2700 3.5850 -4.4703 17 1 1.5660 2.8249 -4.1314 18 6 1.5228 4.6739 -5.1962 19 1 1.5615 5.6901 -4.8328 20 6 0.7896 4.3727 -6.3245 21 7 0.7420 3.1351 -6.7668 22 14 -0.1360 5.7226 -7.2247 23 1 0.7448 6.3215 -8.2594 24 1 -1.3420 5.1480 -7.8735 25 1 -0.5467 6.7713 -6.2569 26 6 3.2908 2.9490 -5.4162 27 6 3.9615 1.7632 -4.7200 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 5.2021 3.0703 1.9317 36 1 5.8159 5.4523 1.9368 37 1 5.2584 6.8803 0.0126 38 1 4.0912 5.9304 -1.9326 39 1 3.2082 5.0959 -3.3105 40 1 0.2266 2.9233 -7.5608 41 1 2.7846 2.6026 -6.3172 42 1 4.0462 3.6874 -5.6850 43 1 4.6891 1.3104 -5.3936 44 1 4.4678 2.1097 -3.8190 45 1 3.2060 1.0249 -4.4511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183957737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:57 Heat of formation + Delta-G solvation = -97.834006 kcal Electronic energy + Delta-G solvation = -28943.142576 eV Core-core repulsion = 25052.450509 eV Total energy + Delta-G solvation = -3890.692067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43352 -39.50535 -37.97853 -36.97246 -36.75396 -35.70642 -34.46512 -33.22651 -32.34257 -31.76932 -28.96474 -28.52128 -25.60959 -24.55802 -24.18073 -22.72773 -22.16372 -21.21658 -20.07648 -19.48304 -18.38949 -17.75450 -17.37650 -17.13208 -17.04089 -16.54739 -16.40360 -15.93212 -15.80461 -15.58510 -15.39356 -14.70618 -14.56157 -14.38674 -14.17830 -13.68131 -13.55926 -13.51408 -13.35574 -13.18175 -13.12837 -12.95257 -12.85834 -12.75540 -12.65546 -12.57800 -12.31416 -12.14246 -12.01713 -11.85328 -11.74328 -11.52678 -11.26947 -11.02381 -10.73697 -10.50596 -10.41064 -10.11673 -9.61313 -8.14312 -6.31632 -0.78963 -0.45499 0.03884 1.46267 1.46798 1.56674 1.84447 2.01011 2.29202 2.50404 2.60309 2.94415 3.15604 3.37202 3.67166 3.69650 3.73862 3.92239 4.02974 4.21250 4.28702 4.32701 4.51043 4.51922 4.54733 4.63684 4.71118 4.76462 4.77380 4.84490 4.96265 5.06257 5.10902 5.13947 5.14731 5.27237 5.29770 5.33989 5.49643 5.56377 5.61345 5.74719 5.81878 5.90311 6.17357 6.74595 6.83879 7.30175 7.45746 8.90823 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.004351 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.100237 B = 6433.745959 C = 7560.138234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C -0.588 4.588 4 S 2.506 3.494 5 O -0.952 6.952 6 O -0.980 6.980 7 C -0.629 4.629 8 C -0.044 4.044 9 C -0.110 4.110 10 C -0.064 4.064 11 C -0.110 4.110 12 C -0.060 4.060 13 C 0.512 3.488 14 O -0.539 6.539 15 N -0.688 5.688 16 C 0.280 3.720 17 H 0.012 0.988 18 C -0.547 4.547 19 H 0.074 0.926 20 C 0.018 3.982 21 N -0.913 5.913 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.289 1.289 25 H -0.263 1.263 26 C -0.121 4.121 27 C -0.124 4.124 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.152 0.848 39 H 0.403 0.597 40 H 0.264 0.736 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.034 0.966 44 H 0.047 0.953 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.179 5.899 17.290 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C -0.720 4.720 4 S 2.690 3.310 5 O -0.949 6.949 6 O -0.978 6.978 7 C -0.716 4.716 8 C -0.063 4.063 9 C -0.128 4.128 10 C -0.082 4.082 11 C -0.130 4.130 12 C -0.063 4.063 13 C 0.298 3.702 14 O -0.421 6.421 15 N -0.337 5.337 16 C 0.177 3.823 17 H 0.030 0.970 18 C -0.585 4.585 19 H 0.092 0.908 20 C -0.182 4.182 21 N -0.551 5.551 22 Si 0.793 3.207 23 H -0.200 1.200 24 H -0.215 1.215 25 H -0.187 1.187 26 C -0.160 4.160 27 C -0.181 4.181 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.168 0.832 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.194 0.806 37 H 0.196 0.804 38 H 0.170 0.830 39 H 0.240 0.760 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.475 4.291 17.092 18.453 hybrid contribution -0.835 1.305 -1.125 1.915 sum 4.639 5.596 15.967 17.544 Atomic orbital electron populations 1.21705 0.92776 1.03044 1.02489 1.21334 0.99628 0.91731 1.03241 1.30352 1.21716 1.07039 1.12927 1.04850 0.78937 0.74276 0.72970 1.93587 1.78502 1.78482 1.44354 1.93460 1.79344 1.78944 1.46030 1.30603 1.14232 1.25090 1.01723 1.21318 0.92334 0.97172 0.95490 1.21977 0.98282 0.92537 1.00031 1.21914 0.92870 1.02170 0.91236 1.21818 0.97655 0.92889 1.00612 1.19725 0.98487 0.95733 0.92398 1.18903 0.80625 0.86649 0.83989 1.90807 1.54424 1.15672 1.81206 1.46111 1.57227 1.13087 1.17274 1.18459 0.89237 0.93250 0.81336 0.97041 1.21535 1.30535 0.95086 1.11340 0.90827 1.25719 0.97079 0.97695 0.97720 1.70046 1.41191 1.19691 1.24179 0.85408 0.77753 0.78914 0.78611 1.19970 1.21473 1.18731 1.21822 0.97355 0.95924 1.00897 1.21682 0.99006 0.98360 0.99100 0.90674 0.90702 0.93610 0.91863 0.89201 0.83211 0.84171 0.82431 0.80567 0.80432 0.83031 0.76023 0.92647 0.90863 0.94414 0.94710 0.93403 0.95088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.91 71.98 0.71 -2.58 16 2 C -0.12 -3.26 5.94 30.59 0.18 -3.08 16 3 C -0.59 -16.81 5.32 71.98 0.38 -16.43 16 4 S 2.51 82.94 4.50 -56.49 -0.25 82.69 16 5 O -0.95 -40.70 14.84 -118.13 -1.75 -42.46 16 6 O -0.98 -32.91 16.74 -127.65 -2.14 -35.04 16 7 C -0.63 -18.33 5.61 22.53 0.13 -18.20 16 8 C -0.04 -0.98 9.49 22.23 0.21 -0.77 16 9 C -0.11 -1.64 10.04 22.33 0.22 -1.41 16 10 C -0.06 -0.95 10.03 22.23 0.22 -0.73 16 11 C -0.11 -2.42 9.54 22.53 0.21 -2.21 16 12 C -0.06 -1.81 5.86 -20.09 -0.12 -1.93 16 13 C 0.51 19.75 5.92 86.79 0.51 20.26 16 14 O -0.54 -23.59 6.20 20.14 0.12 -23.46 16 15 N -0.69 -27.23 4.97 -448.95 -2.23 -29.46 16 16 C 0.28 13.83 2.24 44.25 0.10 13.93 16 17 H 0.01 0.67 7.58 -2.39 -0.02 0.65 16 18 C -0.55 -27.64 8.73 25.60 0.22 -27.41 16 19 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 20 C 0.02 0.95 5.29 84.66 0.45 1.40 16 21 N -0.91 -51.05 11.29 21.45 0.24 -50.80 16 22 Si 0.97 40.75 29.54 68.60 2.03 42.78 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 26 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 27 C -0.12 -5.96 8.51 71.98 0.61 -5.35 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.15 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.14 4.70 5.42 -2.39 -0.01 4.69 16 35 H 0.16 3.06 7.21 -2.91 -0.02 3.04 16 36 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.15 2.78 6.41 -2.91 -0.02 2.76 16 39 H 0.40 13.21 6.57 -92.71 -0.61 12.60 16 40 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.07 4.05 5.95 -2.39 -0.01 4.03 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.05 2.29 5.64 -2.38 -0.01 2.27 16 45 H 0.03 1.58 7.84 -2.39 -0.02 1.56 16 Total: -1.00 -73.71 367.22 0.64 -73.07 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 0.40 Total: 33.04 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 4.22 Total: -50.36 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.99 Total: -80.26 kcal Atomic # 8 Polarization: -97.20 SS G_CDS: -3.76 Total: -100.96 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 16 Polarization: 82.94 SS G_CDS: -0.25 Total: 82.69 kcal Total: -73.71 0.64 -73.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183957737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.761 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds