Wall clock time and date at job start Tue Mar 31 2020 22:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47079 * 2 1 4 4 H 1.08999 * 109.47561 * 57.18577 * 3 2 1 5 5 C 1.50699 * 109.47241 * 177.19266 * 3 2 1 6 6 H 1.08000 * 120.00161 * 119.99125 * 5 3 2 7 7 C 1.37881 * 119.99963 * 299.99670 * 5 3 2 8 8 N 1.31512 * 119.99892 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99967 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46872 * 60.00170 * 9 7 5 11 11 H 1.48503 * 109.46903 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47459 * 299.99964 * 9 7 5 13 13 O 1.45205 * 109.46768 * 297.18998 * 3 2 1 14 14 C 1.34231 * 116.99973 * 110.02039 * 13 3 2 15 15 O 1.20824 * 119.99791 * 355.55979 * 14 13 3 16 16 C 1.50696 * 119.99923 * 175.55515 * 14 13 3 17 17 H 1.09000 * 109.47628 * 321.85162 * 16 14 13 18 18 N 1.46497 * 109.47315 * 201.85403 * 16 14 13 19 19 C 1.34773 * 120.00636 * 155.00206 * 18 16 14 20 20 O 1.21707 * 119.99845 * 359.97438 * 19 18 16 21 21 C 1.46579 * 120.00718 * 179.97438 * 19 18 16 22 22 C 1.36643 * 125.46484 * 180.02562 * 21 19 18 23 23 C 1.37472 * 113.29964 * 179.97438 * 22 21 19 24 24 C 1.33818 * 115.09898 * 359.97438 * 23 22 21 25 25 S 1.70611 * 110.95640 * 359.76674 * 24 23 22 26 26 C 1.53001 * 109.47388 * 81.85054 * 16 14 13 27 27 C 1.53002 * 109.46798 * 65.70159 * 26 16 14 28 28 C 1.52997 * 109.47534 * 185.69993 * 26 16 14 29 29 H 1.08999 * 109.47043 * 185.46855 * 1 2 3 30 30 H 1.09004 * 109.46984 * 65.46339 * 1 2 3 31 31 H 1.09001 * 109.46905 * 305.46590 * 1 2 3 32 32 H 1.09004 * 109.47121 * 119.99418 * 2 1 3 33 33 H 1.09001 * 109.47482 * 239.99886 * 2 1 3 34 34 H 0.96997 * 120.00290 * 179.97438 * 8 7 5 35 35 H 0.97005 * 120.00141 * 334.99577 * 18 16 14 36 36 H 1.08001 * 123.34974 * 359.94365 * 22 21 19 37 37 H 1.08001 * 122.44907 * 180.02562 * 23 22 21 38 38 H 1.08002 * 124.51823 * 180.02562 * 24 23 22 39 39 H 1.08997 * 109.46941 * 305.70587 * 26 16 14 40 40 H 1.08997 * 109.47165 * 56.03432 * 27 26 16 41 41 H 1.09000 * 109.47109 * 176.03412 * 27 26 16 42 42 H 1.09003 * 109.47071 * 296.03318 * 27 26 16 43 43 H 1.09007 * 109.46634 * 60.00372 * 28 26 16 44 44 H 1.09000 * 109.47097 * 179.97438 * 28 26 16 45 45 H 1.08997 * 109.47492 * 300.00257 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6361 1.9708 0.8637 5 6 3.5454 1.4432 0.0696 6 1 4.1224 1.8976 -0.7222 7 6 4.1861 0.8634 1.1441 8 7 3.4835 0.3095 2.1079 9 14 6.0521 0.8635 1.2300 10 1 6.5475 2.2634 1.2296 11 1 6.4903 0.1832 2.4751 12 1 6.6019 0.1435 0.0534 13 8 1.6115 2.1073 -1.2177 14 6 0.6768 3.0627 -1.0939 15 8 0.1734 3.2793 -0.0172 16 6 0.2554 3.8650 -2.2979 17 1 1.1259 4.0695 -2.9212 18 7 -0.3383 5.1301 -1.8583 19 6 -0.3291 6.1998 -2.6781 20 8 0.1729 6.1149 -3.7836 21 6 -0.9236 7.4654 -2.2385 22 6 -0.9761 8.6149 -2.9755 23 6 -1.5917 9.6541 -2.3189 24 6 -2.0293 9.3676 -1.0872 25 16 -1.6908 7.7454 -0.6813 26 6 -0.7744 3.0715 -3.1047 27 6 -2.0521 2.9072 -2.2793 28 6 -1.0962 3.8215 -4.3989 29 1 -0.3633 -1.0230 0.0979 30 1 -0.3633 0.4268 -0.9349 31 1 -0.3633 0.5963 0.8370 32 1 1.8934 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 3.9341 -0.0987 2.8637 35 1 -0.7381 5.1979 -0.9771 36 1 -0.5736 8.6988 -3.9742 37 1 -1.7139 10.6301 -2.7650 38 1 -2.5335 10.0685 -0.4384 39 1 -0.3685 2.0890 -3.3454 40 1 -2.4193 3.8886 -1.9789 41 1 -2.8101 2.4038 -2.8794 42 1 -1.8373 2.3123 -1.3916 43 1 -0.1858 3.9385 -4.9869 44 1 -1.8295 3.2559 -4.9738 45 1 -1.5021 4.8040 -4.1582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187905029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:36 Heat of formation + Delta-G solvation = -118.943978 kcal Electronic energy + Delta-G solvation = -28004.154961 eV Core-core repulsion = 24112.547498 eV Total energy + Delta-G solvation = -3891.607464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.04199 -40.76524 -38.69669 -37.93852 -36.97940 -35.52992 -34.37839 -33.39541 -31.03609 -29.63927 -28.62547 -28.11514 -25.90813 -25.18227 -23.02899 -22.78605 -21.71591 -20.88068 -20.42400 -19.84970 -18.86788 -18.39732 -17.73152 -17.36456 -17.02362 -16.77854 -16.58385 -16.23868 -15.65088 -15.23460 -14.94639 -14.85120 -14.72033 -14.54155 -14.17638 -13.81356 -13.68935 -13.52111 -13.30442 -13.26065 -13.22457 -13.07410 -12.93943 -12.67749 -12.51256 -12.49299 -12.19807 -12.11313 -11.91416 -11.86797 -11.81719 -11.58187 -11.32097 -11.25937 -10.78629 -10.55340 -10.37725 -9.88027 -9.57522 -8.28453 -6.44823 -0.51204 0.47044 0.93825 1.09990 1.39293 1.40096 1.42479 1.49285 1.55865 2.08980 2.20314 2.39998 3.00985 3.55349 3.63338 3.79414 3.83126 4.09807 4.14062 4.34979 4.36394 4.38234 4.43089 4.54901 4.55431 4.57553 4.75317 4.80362 4.88742 4.92907 4.98324 5.02519 5.08424 5.15377 5.20236 5.20571 5.29335 5.36219 5.37499 5.40823 5.50592 5.70623 5.93089 6.08256 6.21608 6.55580 6.84562 6.93344 7.25774 8.77406 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.003142 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.652417 B = 8909.494371 C = 9651.935595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.221 3.779 4 H 0.020 0.980 5 C -0.559 4.559 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.974 3.026 10 H -0.272 1.272 11 H -0.275 1.275 12 H -0.265 1.265 13 O -0.357 6.357 14 C 0.455 3.545 15 O -0.531 6.531 16 C 0.165 3.835 17 H 0.115 0.885 18 N -0.706 5.706 19 C 0.596 3.404 20 O -0.548 6.548 21 C -0.302 4.302 22 C -0.049 4.049 23 C -0.157 4.157 24 C -0.214 4.214 25 S 0.207 5.793 26 C -0.097 4.097 27 C -0.145 4.145 28 C -0.126 4.126 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.271 0.729 35 H 0.409 0.591 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.200 0.800 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.165 14.641 -8.380 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C 0.168 3.832 4 H 0.038 0.962 5 C -0.597 4.597 6 H 0.078 0.922 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.797 3.203 10 H -0.198 1.198 11 H -0.200 1.200 12 H -0.190 1.190 13 O -0.272 6.272 14 C 0.299 3.701 15 O -0.421 6.421 16 C 0.059 3.941 17 H 0.132 0.868 18 N -0.361 5.361 19 C 0.385 3.615 20 O -0.428 6.428 21 C -0.422 4.422 22 C -0.083 4.083 23 C -0.188 4.188 24 C -0.352 4.352 25 S 0.474 5.526 26 C -0.116 4.116 27 C -0.203 4.203 28 C -0.183 4.183 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.246 0.754 36 H 0.173 0.827 37 H 0.191 0.809 38 H 0.217 0.783 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.193 13.577 -7.329 20.964 hybrid contribution 1.198 0.749 -0.210 1.429 sum -12.995 14.327 -7.539 20.760 Atomic orbital electron populations 1.21690 0.96003 1.01335 1.00193 1.21758 0.94735 0.97204 1.02369 1.20512 0.93683 0.89440 0.79582 0.96227 1.21428 0.91044 1.39603 1.07618 0.92206 1.25703 1.03935 0.93908 0.94280 1.69974 1.37481 1.37182 1.10148 0.85372 0.78256 0.78607 0.78044 1.19766 1.19976 1.18998 1.86445 1.51862 1.47371 1.41561 1.23792 0.77014 0.79083 0.90256 1.90559 1.54366 1.66951 1.30266 1.20480 0.99050 0.83683 0.90917 0.86756 1.45625 1.60521 1.09842 1.20080 1.17120 0.78289 0.82067 0.84060 1.90820 1.46746 1.84175 1.21011 1.24460 1.16428 0.98743 1.02581 1.21054 0.96112 0.90235 1.00937 1.20302 1.02035 1.01649 0.94771 1.25799 1.06455 1.01119 1.01778 1.83392 1.50540 1.06090 1.12574 1.21501 0.94880 0.99326 0.95916 1.21838 0.96796 1.02182 0.99448 1.21764 1.02016 0.99631 0.94932 0.91542 0.93565 0.94613 0.89579 0.93530 0.91989 0.75356 0.82685 0.80853 0.78285 0.88996 0.92188 0.89917 0.94087 0.92662 0.90737 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 9.53 71.98 0.69 -4.76 16 2 C -0.12 -5.95 5.48 30.60 0.17 -5.79 16 3 C 0.22 11.76 2.24 29.85 0.07 11.82 16 4 H 0.02 1.18 6.69 -2.39 -0.02 1.17 16 5 C -0.56 -31.79 8.90 25.60 0.23 -31.56 16 6 H 0.06 3.39 7.81 -2.91 -0.02 3.36 16 7 C 0.02 1.21 5.30 84.66 0.45 1.66 16 8 N -0.91 -51.42 11.30 21.45 0.24 -51.18 16 9 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 O -0.36 -16.84 9.45 -51.42 -0.49 -17.33 16 14 C 0.46 18.69 5.88 71.23 0.42 19.11 16 15 O -0.53 -23.62 14.73 21.97 0.32 -23.30 16 16 C 0.17 5.38 2.45 44.24 0.11 5.49 16 17 H 0.11 3.89 7.58 -2.39 -0.02 3.88 16 18 N -0.71 -20.79 3.92 -450.18 -1.77 -22.56 16 19 C 0.60 17.06 6.38 86.42 0.55 17.61 16 20 O -0.55 -17.92 13.98 -4.37 -0.06 -17.98 16 21 C -0.30 -6.98 6.45 24.07 0.16 -6.83 16 22 C -0.05 -0.93 10.01 21.72 0.22 -0.72 16 23 C -0.16 -2.13 10.15 21.08 0.21 -1.92 16 24 C -0.21 -2.72 10.92 66.81 0.73 -1.99 16 25 S 0.21 3.70 22.16 -56.49 -1.25 2.45 16 26 C -0.10 -2.61 2.73 -10.79 -0.03 -2.64 16 27 C -0.15 -3.62 8.80 71.98 0.63 -2.98 16 28 C -0.13 -3.07 7.81 71.98 0.56 -2.50 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 1.73 7.68 -2.39 -0.02 1.71 16 31 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 4.59 6.00 -2.39 -0.01 4.58 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 34 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.41 11.75 6.85 -92.70 -0.64 11.12 16 36 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.06 1.43 7.31 -2.39 -0.02 1.41 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.04 1.18 7.34 -2.39 -0.02 1.17 16 43 H 0.05 1.44 7.88 -2.38 -0.02 1.42 16 44 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.05 1.32 5.63 -2.39 -0.01 1.30 16 Total: -1.00 -66.46 381.52 4.56 -61.91 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.37 Total: 28.81 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.16 Total: -5.98 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -1.52 Total: -73.74 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -0.22 Total: -58.60 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.25 Total: 2.45 kcal Total: -66.46 4.56 -61.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187905029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.036 kcal (2) G-P(sol) polarization free energy of solvation -66.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds