Wall clock time and date at job start Tue Mar 31 2020 22:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46808 * 2 1 4 4 H 1.09000 * 109.47103 * 304.99513 * 3 2 1 5 5 C 1.50706 * 109.47045 * 184.99947 * 3 2 1 6 6 H 1.07999 * 119.99844 * 240.00290 * 5 3 2 7 7 C 1.37873 * 120.00192 * 59.99892 * 5 3 2 8 8 N 1.31518 * 120.00029 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00092 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47377 * 59.99860 * 9 7 5 11 11 H 1.48505 * 109.47250 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47020 * 299.99709 * 9 7 5 13 13 O 1.45196 * 109.47064 * 64.99815 * 3 2 1 14 14 C 1.34231 * 117.00262 * 269.99802 * 13 3 2 15 15 O 1.20821 * 119.99481 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00154 * 180.02562 * 14 13 3 17 17 H 1.09004 * 109.47103 * 300.00150 * 16 14 13 18 18 N 1.46496 * 109.46922 * 180.02562 * 16 14 13 19 19 C 1.34780 * 120.00055 * 155.00275 * 18 16 14 20 20 O 1.21701 * 120.00040 * 359.97438 * 19 18 16 21 21 C 1.46586 * 120.00091 * 179.97438 * 19 18 16 22 22 C 1.36650 * 125.45612 * 179.97438 * 21 19 18 23 23 C 1.37472 * 113.29233 * 179.97438 * 22 21 19 24 24 C 1.33812 * 115.10460 * 359.97438 * 23 22 21 25 25 S 1.70622 * 110.95424 * 359.72702 * 24 23 22 26 26 C 1.52997 * 109.47078 * 60.00281 * 16 14 13 27 27 C 1.53006 * 109.47127 * 299.99663 * 26 16 14 28 28 C 1.52999 * 109.46991 * 180.02562 * 26 16 14 29 29 H 1.09008 * 109.46691 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47625 * 299.99751 * 1 2 3 31 31 H 1.08996 * 109.47141 * 60.00360 * 1 2 3 32 32 H 1.08996 * 109.47625 * 240.00249 * 2 1 3 33 33 H 1.08996 * 109.47141 * 119.99639 * 2 1 3 34 34 H 0.96991 * 120.00296 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00121 * 334.99913 * 18 16 14 36 36 H 1.07996 * 123.35301 * 359.97438 * 22 21 19 37 37 H 1.07997 * 122.44571 * 180.02562 * 23 22 21 38 38 H 1.08003 * 124.52415 * 180.02562 * 24 23 22 39 39 H 1.08993 * 109.47194 * 59.99505 * 26 16 14 40 40 H 1.09001 * 109.46801 * 300.00272 * 27 26 16 41 41 H 1.09001 * 109.46998 * 59.99868 * 27 26 16 42 42 H 1.09000 * 109.47050 * 180.02562 * 27 26 16 43 43 H 1.09000 * 109.47160 * 179.97438 * 28 26 16 44 44 H 1.09002 * 109.46719 * 299.99711 * 28 26 16 45 45 H 1.08993 * 109.47839 * 59.99553 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8786 -1.2279 8 7 3.4063 0.3376 -2.1733 9 14 6.0050 0.8803 -1.3810 10 1 6.5967 0.1455 -0.2341 11 1 6.3979 0.2170 -2.6503 12 1 6.5004 2.2802 -1.3807 13 8 1.6557 2.0917 1.2407 14 6 0.4726 2.7255 1.2559 15 8 -0.2193 2.7369 0.2655 16 6 0.0072 3.4226 2.5083 17 1 -0.0714 2.6985 3.3193 18 7 -1.3034 4.0320 2.2697 19 6 -2.1385 4.2606 3.3026 20 8 -1.8039 3.9602 4.4335 21 6 -3.4497 4.8709 3.0639 22 6 -4.3804 5.1508 4.0244 23 6 -5.5246 5.7239 3.5221 24 6 -5.5325 5.9083 2.1968 25 16 -4.0730 5.3686 1.4969 26 6 1.0137 4.5096 2.8908 27 6 2.3823 3.8726 3.1403 28 6 0.5415 5.2169 4.1627 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0609 -2.9498 35 1 -1.5702 4.2711 1.3683 36 1 -4.2319 4.9426 5.0737 37 1 -6.3559 6.0056 4.1513 38 1 -6.3513 6.3452 1.6444 39 1 1.0923 5.2335 2.0799 40 1 2.3036 3.1485 3.9513 41 1 2.7188 3.3683 2.2344 42 1 3.0991 4.6469 3.4132 43 1 1.2588 5.9911 4.4355 44 1 -0.4335 5.6707 3.9854 45 1 0.4632 4.4928 4.9735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187905049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:39 Heat of formation + Delta-G solvation = -114.872541 kcal Electronic energy + Delta-G solvation = -28053.498252 eV Core-core repulsion = 24162.067339 eV Total energy + Delta-G solvation = -3891.430913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05117 -40.79004 -38.63934 -37.82637 -37.11542 -35.52484 -34.50926 -33.33524 -31.03950 -29.64816 -28.63599 -27.81533 -25.80345 -25.16380 -23.12481 -22.51666 -21.67084 -21.27023 -20.42842 -19.89077 -18.81170 -18.38970 -17.67444 -17.42754 -17.05456 -16.67292 -16.44416 -16.40063 -16.02213 -15.06918 -14.85023 -14.75447 -14.65567 -14.25001 -13.90865 -13.69695 -13.62674 -13.56800 -13.46015 -13.29270 -13.22055 -13.12424 -12.96361 -12.80759 -12.58196 -12.49372 -12.19430 -11.93211 -11.87817 -11.81501 -11.76332 -11.42327 -11.29729 -11.22416 -10.75386 -10.51709 -10.37046 -9.87774 -9.57175 -8.25201 -6.40898 -0.51030 0.47463 0.94282 1.17686 1.35900 1.42943 1.46305 1.49295 1.56381 2.08441 2.21300 2.43146 3.05039 3.56080 3.60953 3.82864 3.84684 4.13824 4.23504 4.29284 4.35404 4.36666 4.38309 4.53792 4.55269 4.60874 4.82463 4.84332 4.90714 5.01041 5.03936 5.05725 5.10062 5.14401 5.20248 5.20774 5.33914 5.37278 5.41486 5.51007 5.62712 5.67619 5.94832 6.11619 6.21578 6.61025 6.86798 6.94627 7.29418 8.81197 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.002958 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.054567 B = 9464.577026 C =10260.987556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.132 4.132 3 C 0.225 3.775 4 H 0.011 0.989 5 C -0.544 4.544 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.976 3.024 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.269 1.269 13 O -0.340 6.340 14 C 0.450 3.550 15 O -0.532 6.532 16 C 0.166 3.834 17 H 0.121 0.879 18 N -0.709 5.709 19 C 0.597 3.403 20 O -0.549 6.549 21 C -0.303 4.303 22 C -0.049 4.049 23 C -0.157 4.157 24 C -0.214 4.214 25 S 0.208 5.792 26 C -0.092 4.092 27 C -0.157 4.157 28 C -0.124 4.124 29 H 0.058 0.942 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.269 0.731 35 H 0.409 0.591 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.200 0.800 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.193 11.915 10.077 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.170 4.170 3 C 0.172 3.828 4 H 0.029 0.971 5 C -0.581 4.581 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.799 3.201 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.193 1.193 13 O -0.255 6.255 14 C 0.294 3.706 15 O -0.422 6.422 16 C 0.060 3.940 17 H 0.139 0.861 18 N -0.363 5.363 19 C 0.386 3.614 20 O -0.429 6.429 21 C -0.423 4.423 22 C -0.084 4.084 23 C -0.188 4.188 24 C -0.352 4.352 25 S 0.475 5.525 26 C -0.112 4.112 27 C -0.214 4.214 28 C -0.181 4.181 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.173 0.827 37 H 0.191 0.809 38 H 0.217 0.783 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.543 11.534 8.863 20.569 hybrid contribution 0.036 -0.213 0.350 0.411 sum -14.507 11.320 9.213 20.578 Atomic orbital electron populations 1.21710 0.96466 1.00520 0.99985 1.21892 0.94268 0.98422 1.02379 1.20423 0.94599 0.89090 0.78700 0.97096 1.21279 0.90348 1.39740 1.06751 0.91256 1.25730 1.03791 0.94042 0.94524 1.69997 1.37340 1.38011 1.09862 0.85338 0.78255 0.78760 0.77719 1.19062 1.20562 1.19345 1.86567 1.34258 1.62216 1.42449 1.23795 0.80330 0.76592 0.89926 1.90590 1.55655 1.59299 1.36706 1.20558 0.84184 0.96462 0.92836 0.86114 1.45632 1.16128 1.63268 1.11236 1.17101 0.82751 0.77436 0.84121 1.90816 1.76247 1.53182 1.22642 1.24467 1.00339 1.17442 1.00014 1.21056 0.91629 0.95016 1.00662 1.20299 0.99839 1.03446 0.95172 1.25803 1.03549 1.06290 0.99540 1.83400 1.08647 1.54088 1.06359 1.21409 0.94374 0.95619 0.99789 1.22033 0.94934 1.01179 1.03275 1.21759 1.00448 1.00269 0.95668 0.92262 0.94835 0.94221 0.89486 0.93657 0.92149 0.75399 0.82670 0.80862 0.78296 0.90738 0.91981 0.91701 0.90679 0.91066 0.93589 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.56 71.98 0.62 -4.98 16 2 C -0.13 -6.48 5.49 30.60 0.17 -6.31 16 3 C 0.22 11.71 2.25 29.85 0.07 11.78 16 4 H 0.01 0.66 7.16 -2.39 -0.02 0.64 16 5 C -0.54 -29.59 8.90 25.60 0.23 -29.36 16 6 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -51.14 11.30 21.45 0.24 -50.90 16 9 Si 0.98 42.01 29.54 68.60 2.03 44.04 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 O -0.34 -15.30 6.72 -51.43 -0.35 -15.65 16 14 C 0.45 18.04 5.71 71.24 0.41 18.45 16 15 O -0.53 -23.28 12.98 21.98 0.29 -22.99 16 16 C 0.17 5.34 2.38 44.24 0.11 5.44 16 17 H 0.12 3.94 7.58 -2.38 -0.02 3.92 16 18 N -0.71 -20.63 4.84 -450.17 -2.18 -22.80 16 19 C 0.60 16.83 6.14 86.42 0.53 17.36 16 20 O -0.55 -17.67 13.96 -4.35 -0.06 -17.73 16 21 C -0.30 -6.87 6.45 24.08 0.16 -6.72 16 22 C -0.05 -0.92 10.01 21.72 0.22 -0.70 16 23 C -0.16 -2.07 10.15 21.08 0.21 -1.86 16 24 C -0.21 -2.65 10.92 66.81 0.73 -1.92 16 25 S 0.21 3.65 22.16 -56.49 -1.25 2.40 16 26 C -0.09 -2.63 2.68 -10.79 -0.03 -2.66 16 27 C -0.16 -4.63 8.67 71.98 0.62 -4.00 16 28 C -0.12 -3.15 7.71 71.98 0.56 -2.59 16 29 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.03 1.39 6.06 -2.39 -0.01 1.38 16 31 H 0.04 1.79 7.80 -2.39 -0.02 1.78 16 32 H 0.09 4.70 5.95 -2.39 -0.01 4.68 16 33 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.41 11.57 6.91 -92.71 -0.64 10.93 16 36 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 2.36 5.32 -2.39 -0.01 2.35 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.21 5.78 -2.39 -0.01 1.20 16 45 H 0.06 1.60 7.53 -2.39 -0.02 1.58 16 Total: -1.00 -64.03 373.34 4.13 -59.90 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.37 Total: 30.33 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 5.04 Total: -6.60 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -1.94 Total: -73.70 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.12 Total: -56.37 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.25 Total: 2.40 kcal Total: -64.03 4.13 -59.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187905049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.974 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds