Wall clock time and date at job start Tue Mar 31 2020 22:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34228 * 117.00100 * 89.99663 * 13 3 2 15 15 O 1.20817 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 3 17 17 H 1.08995 * 109.47448 * 60.00218 * 16 14 13 18 18 N 1.46502 * 109.46824 * 179.97438 * 16 14 13 19 19 C 1.34772 * 120.00063 * 205.00174 * 18 16 14 20 20 O 1.21705 * 120.00030 * 0.02562 * 19 18 16 21 21 C 1.46587 * 120.00320 * 180.02562 * 19 18 16 22 22 C 1.36644 * 125.45898 * 180.02562 * 21 19 18 23 23 C 1.37476 * 113.29423 * 179.97438 * 22 21 19 24 24 C 1.33814 * 115.10288 * 359.97438 * 23 22 21 25 25 S 1.70623 * 110.95449 * 359.76323 * 24 23 22 26 26 C 1.52996 * 109.47297 * 299.99988 * 16 14 13 27 27 C 1.52995 * 109.47420 * 60.00308 * 26 16 14 28 28 C 1.53002 * 109.47215 * 180.02562 * 26 16 14 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99846 * 25.00175 * 18 16 14 36 36 H 1.07993 * 123.35311 * 359.93002 * 22 21 19 37 37 H 1.08003 * 122.44603 * 180.02562 * 23 22 21 38 38 H 1.08000 * 124.52791 * 180.02562 * 24 23 22 39 39 H 1.09005 * 109.47249 * 299.99716 * 26 16 14 40 40 H 1.08993 * 109.47349 * 59.99850 * 27 26 16 41 41 H 1.08996 * 109.47278 * 179.97438 * 27 26 16 42 42 H 1.09007 * 109.47074 * 299.99983 * 27 26 16 43 43 H 1.09003 * 109.47122 * 60.00040 * 28 26 16 44 44 H 1.08996 * 109.47298 * 179.97438 * 28 26 16 45 45 H 1.09004 * 109.47270 * 299.99813 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2558 15 8 -0.2192 2.7369 -0.2654 16 6 0.0074 3.4227 -2.5083 17 1 -0.0713 2.6987 -3.3193 18 7 -1.3033 4.0322 -2.2696 19 6 -2.1383 4.2607 -3.3025 20 8 -1.8038 3.9603 -4.4334 21 6 -3.4495 4.8711 -3.0639 22 6 -4.3802 5.1510 -4.0244 23 6 -5.5249 5.7231 -3.5219 24 6 -5.5335 5.9057 -2.1963 25 16 -4.0799 5.3526 -1.4946 26 6 1.0139 4.5096 -2.8908 27 6 2.3824 3.8726 -3.1402 28 6 0.5412 5.2178 -4.1620 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0605 2.9501 35 1 -1.5701 4.2713 -1.3682 36 1 -4.2312 4.9441 -5.0738 37 1 -6.3566 6.0039 -4.1510 38 1 -6.3530 6.3409 -1.6437 39 1 1.0925 5.2337 -2.0798 40 1 2.3038 3.1486 -3.9512 41 1 3.0992 4.6469 -3.4132 42 1 2.7190 3.3683 -2.2343 43 1 -0.4337 5.6718 -3.9839 44 1 1.2580 5.9925 -4.4342 45 1 0.4622 4.4941 -4.9732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187905078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:44 Heat of formation + Delta-G solvation = -99.510800 kcal Electronic energy + Delta-G solvation = -28052.988310 eV Core-core repulsion = 24162.223532 eV Total energy + Delta-G solvation = -3890.764778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63867 -39.44321 -37.80071 -36.29145 -35.71078 -33.69494 -33.23196 -31.40392 -30.18263 -28.08688 -27.03134 -26.67059 -24.89468 -23.30215 -21.75878 -21.32262 -20.16374 -19.84579 -19.34563 -18.88727 -17.03372 -16.85132 -16.42163 -16.00919 -15.71589 -15.48928 -15.17637 -14.95678 -14.55499 -13.92386 -13.59144 -13.29402 -13.03480 -12.89036 -12.84145 -12.82102 -12.58988 -12.39851 -11.94142 -11.88713 -11.80656 -11.43102 -11.25894 -11.24872 -11.19118 -10.99143 -10.72778 -10.69618 -10.57015 -10.24797 -10.12825 -9.86594 -9.71600 -9.44770 -9.23513 -9.04499 -8.85923 -8.83838 -8.49792 -6.22764 -4.30187 0.26541 1.22020 1.63385 2.15216 2.73749 2.79731 3.07011 3.23676 3.27912 3.30139 3.64711 4.28663 4.59751 4.72229 4.86841 5.02497 5.07339 5.09382 5.20014 5.30506 5.50217 5.54015 5.67769 5.79858 5.89799 5.93378 6.02354 6.04860 6.18035 6.21909 6.24467 6.27944 6.28611 6.40394 6.54682 6.80564 6.88247 6.89812 7.10654 7.16866 7.32971 7.56031 7.67655 7.85381 8.01322 8.09676 8.49921 8.80594 9.35093 10.83848 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002959 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.352642 B = 9461.815911 C =10261.691444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.220 3.780 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.339 6.339 14 C 0.453 3.547 15 O -0.513 6.513 16 C 0.155 3.845 17 H 0.122 0.878 18 N -0.709 5.709 19 C 0.595 3.405 20 O -0.523 6.523 21 C -0.265 4.265 22 C -0.057 4.057 23 C -0.152 4.152 24 C -0.233 4.233 25 S 0.213 5.787 26 C -0.097 4.097 27 C -0.161 4.161 28 C -0.136 4.136 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.109 0.891 33 H 0.043 0.957 34 H 0.267 0.733 35 H 0.407 0.593 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.169 0.831 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.269 10.719 -9.078 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 O -0.254 6.254 14 C 0.295 3.705 15 O -0.404 6.404 16 C 0.049 3.951 17 H 0.140 0.860 18 N -0.362 5.362 19 C 0.382 3.618 20 O -0.401 6.401 21 C -0.385 4.385 22 C -0.090 4.090 23 C -0.183 4.183 24 C -0.371 4.371 25 S 0.480 5.520 26 C -0.117 4.117 27 C -0.219 4.219 28 C -0.193 4.193 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.244 0.756 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.186 0.814 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.606 10.305 -7.857 18.790 hybrid contribution -0.108 0.107 -0.659 0.676 sum -13.714 10.412 -8.516 19.209 Atomic orbital electron populations 1.21859 0.98421 0.99097 1.00608 1.22032 0.92568 0.99367 1.03490 1.20757 0.95123 0.88784 0.78578 0.93440 1.20983 0.89458 1.39221 1.06293 0.91234 1.24874 0.99197 0.94710 0.95074 1.69876 1.35501 1.37661 1.09448 0.86349 0.83889 0.78511 0.77505 1.19975 1.21074 1.19903 1.86541 1.32878 1.61817 1.44210 1.23067 0.81377 0.77212 0.88853 1.90601 1.55412 1.58766 1.35575 1.20614 0.82953 0.96187 0.95304 0.86024 1.45632 1.16562 1.63191 1.10826 1.16790 0.82194 0.78060 0.84783 1.90844 1.75491 1.51895 1.21883 1.24629 1.00733 1.14946 0.98227 1.20793 0.91334 0.96161 1.00717 1.20044 0.99791 1.03762 0.94688 1.25386 1.04113 1.08121 0.99517 1.83359 1.07699 1.53916 1.07014 1.21411 0.95061 0.96161 0.99024 1.22100 0.94329 1.00682 1.04751 1.21876 1.00232 1.00234 0.96968 0.92820 0.94764 0.95111 0.87276 0.93857 0.92304 0.75625 0.82821 0.83743 0.81383 0.90788 0.92423 0.92632 0.88589 0.93149 0.93003 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.56 37.16 0.32 -2.73 16 2 C -0.14 -3.28 5.49 -26.73 -0.15 -3.43 16 3 C 0.22 5.52 2.25 -27.88 -0.06 5.46 16 4 H 0.05 1.33 7.16 -51.93 -0.37 0.95 16 5 C -0.52 -13.87 8.90 -34.44 -0.31 -14.18 16 6 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.31 11.29 55.43 0.63 -23.68 16 9 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 O -0.34 -7.41 6.72 -39.25 -0.26 -7.67 16 14 C 0.45 8.83 5.71 36.01 0.21 9.03 16 15 O -0.51 -10.88 12.98 -18.74 -0.24 -11.12 16 16 C 0.16 2.47 2.38 -69.08 -0.16 2.31 16 17 H 0.12 1.96 7.57 -51.93 -0.39 1.57 16 18 N -0.71 -10.21 4.84 -56.27 -0.27 -10.48 16 19 C 0.60 8.40 6.13 -12.90 -0.08 8.32 16 20 O -0.52 -8.42 13.96 5.18 0.07 -8.35 16 21 C -0.26 -3.10 6.45 -36.79 -0.24 -3.34 16 22 C -0.06 -0.57 10.01 -40.44 -0.40 -0.98 16 23 C -0.15 -1.22 10.15 -41.41 -0.42 -1.64 16 24 C -0.23 -1.80 10.92 29.18 0.32 -1.49 16 25 S 0.21 2.00 22.16 -107.50 -2.38 -0.38 16 26 C -0.10 -1.40 2.68 -90.62 -0.24 -1.64 16 27 C -0.16 -2.41 8.67 37.16 0.32 -2.09 16 28 C -0.14 -1.80 7.72 37.16 0.29 -1.51 16 29 H 0.05 1.19 7.80 -51.93 -0.40 0.79 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.63 6.06 -51.93 -0.31 0.32 16 32 H 0.11 2.86 5.95 -51.93 -0.31 2.55 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.41 5.65 6.91 -40.82 -0.28 5.37 16 36 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 38 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.72 5.32 -51.93 -0.28 1.45 16 43 H 0.05 0.68 5.78 -51.93 -0.30 0.38 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.93 7.52 -51.93 -0.39 0.54 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -29.11 373.34 -8.96 -38.07 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.39 Total: 8.83 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.71 Total: -6.30 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.35 Total: -34.17 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.43 Total: -27.14 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.38 Total: -0.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.11 -8.96 -38.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187905078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.445 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds