Wall clock time and date at job start Tue Mar 31 2020 22:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34228 * 117.00100 * 89.99663 * 13 3 2 15 15 O 1.20817 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 3 17 17 H 1.08995 * 109.47448 * 60.00218 * 16 14 13 18 18 N 1.46502 * 109.46824 * 179.97438 * 16 14 13 19 19 C 1.34772 * 120.00063 * 205.00174 * 18 16 14 20 20 O 1.21705 * 120.00030 * 0.02562 * 19 18 16 21 21 C 1.46587 * 120.00320 * 180.02562 * 19 18 16 22 22 C 1.36644 * 125.45898 * 180.02562 * 21 19 18 23 23 C 1.37476 * 113.29423 * 179.97438 * 22 21 19 24 24 C 1.33814 * 115.10288 * 359.97438 * 23 22 21 25 25 S 1.70623 * 110.95449 * 359.76323 * 24 23 22 26 26 C 1.52996 * 109.47297 * 299.99988 * 16 14 13 27 27 C 1.52995 * 109.47420 * 60.00308 * 26 16 14 28 28 C 1.53002 * 109.47215 * 180.02562 * 26 16 14 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99846 * 25.00175 * 18 16 14 36 36 H 1.07993 * 123.35311 * 359.93002 * 22 21 19 37 37 H 1.08003 * 122.44603 * 180.02562 * 23 22 21 38 38 H 1.08000 * 124.52791 * 180.02562 * 24 23 22 39 39 H 1.09005 * 109.47249 * 299.99716 * 26 16 14 40 40 H 1.08993 * 109.47349 * 59.99850 * 27 26 16 41 41 H 1.08996 * 109.47278 * 179.97438 * 27 26 16 42 42 H 1.09007 * 109.47074 * 299.99983 * 27 26 16 43 43 H 1.09003 * 109.47122 * 60.00040 * 28 26 16 44 44 H 1.08996 * 109.47298 * 179.97438 * 28 26 16 45 45 H 1.09004 * 109.47270 * 299.99813 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2558 15 8 -0.2192 2.7369 -0.2654 16 6 0.0074 3.4227 -2.5083 17 1 -0.0713 2.6987 -3.3193 18 7 -1.3033 4.0322 -2.2696 19 6 -2.1383 4.2607 -3.3025 20 8 -1.8038 3.9603 -4.4334 21 6 -3.4495 4.8711 -3.0639 22 6 -4.3802 5.1510 -4.0244 23 6 -5.5249 5.7231 -3.5219 24 6 -5.5335 5.9057 -2.1963 25 16 -4.0799 5.3526 -1.4946 26 6 1.0139 4.5096 -2.8908 27 6 2.3824 3.8726 -3.1402 28 6 0.5412 5.2178 -4.1620 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0605 2.9501 35 1 -1.5701 4.2713 -1.3682 36 1 -4.2312 4.9441 -5.0738 37 1 -6.3566 6.0039 -4.1510 38 1 -6.3530 6.3409 -1.6437 39 1 1.0925 5.2337 -2.0798 40 1 2.3038 3.1486 -3.9512 41 1 3.0992 4.6469 -3.4132 42 1 2.7190 3.3683 -2.2343 43 1 -0.4337 5.6718 -3.9839 44 1 1.2580 5.9925 -4.4342 45 1 0.4622 4.4941 -4.9732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187905078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:43 Heat of formation + Delta-G solvation = -114.887445 kcal Electronic energy + Delta-G solvation = -28053.655091 eV Core-core repulsion = 24162.223532 eV Total energy + Delta-G solvation = -3891.431559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05143 -40.78997 -38.63915 -37.82635 -37.11518 -35.52549 -34.50912 -33.33561 -31.03939 -29.64832 -28.63629 -27.81698 -25.80325 -25.16344 -23.12461 -22.51631 -21.67024 -21.26993 -20.42853 -19.89088 -18.81162 -18.38981 -17.67429 -17.42753 -17.05483 -16.67244 -16.44343 -16.40264 -16.02170 -15.06904 -14.85075 -14.75436 -14.65509 -14.24982 -13.90736 -13.69956 -13.62673 -13.56818 -13.45951 -13.29325 -13.22005 -13.12429 -12.96457 -12.80762 -12.58183 -12.49310 -12.19430 -11.93139 -11.87755 -11.81576 -11.76329 -11.42316 -11.29733 -11.22380 -10.75423 -10.51736 -10.37056 -9.87813 -9.57203 -8.25251 -6.40896 -0.51020 0.47446 0.94273 1.17706 1.35917 1.42944 1.46308 1.49284 1.56390 2.08366 2.21348 2.43148 3.05037 3.56068 3.60956 3.82856 3.84658 4.13828 4.23559 4.29240 4.35409 4.36621 4.38311 4.53786 4.55273 4.60883 4.82462 4.84364 4.90647 5.01028 5.03935 5.05721 5.10052 5.14453 5.20257 5.20761 5.33889 5.37274 5.41432 5.50991 5.62710 5.67613 5.94815 6.11639 6.21580 6.61012 6.86795 6.94621 7.29399 8.81135 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002959 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.352642 B = 9461.815911 C =10261.691444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.132 4.132 3 C 0.225 3.775 4 H 0.011 0.989 5 C -0.544 4.544 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.976 3.024 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.266 1.266 13 O -0.340 6.340 14 C 0.450 3.550 15 O -0.532 6.532 16 C 0.166 3.834 17 H 0.121 0.879 18 N -0.709 5.709 19 C 0.597 3.403 20 O -0.549 6.549 21 C -0.302 4.302 22 C -0.049 4.049 23 C -0.157 4.157 24 C -0.214 4.214 25 S 0.208 5.792 26 C -0.092 4.092 27 C -0.157 4.157 28 C -0.124 4.124 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.269 0.731 35 H 0.409 0.591 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.200 0.800 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.203 11.890 -10.070 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.170 4.170 3 C 0.172 3.828 4 H 0.029 0.971 5 C -0.581 4.581 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.799 3.201 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.191 1.191 13 O -0.255 6.255 14 C 0.294 3.706 15 O -0.422 6.422 16 C 0.060 3.940 17 H 0.139 0.861 18 N -0.363 5.363 19 C 0.386 3.614 20 O -0.429 6.429 21 C -0.423 4.423 22 C -0.084 4.084 23 C -0.188 4.188 24 C -0.352 4.352 25 S 0.475 5.525 26 C -0.112 4.112 27 C -0.214 4.214 28 C -0.181 4.181 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.246 0.754 36 H 0.173 0.827 37 H 0.191 0.809 38 H 0.217 0.783 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.562 11.489 -8.854 20.553 hybrid contribution 0.043 -0.196 -0.352 0.405 sum -14.519 11.292 -9.206 20.568 Atomic orbital electron populations 1.21711 0.96465 1.00520 0.99985 1.21892 0.94270 0.98422 1.02379 1.20423 0.94599 0.89088 0.78698 0.97098 1.21278 0.90349 1.39740 1.06762 0.91257 1.25730 1.03792 0.94037 0.94530 1.70000 1.37335 1.38018 1.09844 0.85337 0.78252 0.78759 0.77718 1.19345 1.20562 1.19066 1.86568 1.34258 1.62213 1.42454 1.23793 0.80331 0.76592 0.89924 1.90588 1.55652 1.59300 1.36706 1.20558 0.84183 0.96462 0.92838 0.86115 1.45631 1.16129 1.63264 1.11235 1.17101 0.82760 0.77427 0.84123 1.90817 1.76255 1.53179 1.22642 1.24466 1.00277 1.17552 0.99958 1.21055 0.91580 0.95041 1.00684 1.20301 0.99829 1.03432 0.95194 1.25803 1.03636 1.06211 0.99526 1.83405 1.08882 1.54111 1.06116 1.21408 0.94372 0.95613 0.99795 1.22029 0.94932 1.01179 1.03276 1.21761 1.00449 1.00254 0.95682 0.94220 0.92260 0.94835 0.89484 0.93660 0.92151 0.75398 0.82669 0.80859 0.78298 0.90745 0.91981 0.90680 0.91698 0.93593 0.91068 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 8.56 71.98 0.62 -4.98 16 2 C -0.13 -6.48 5.49 30.59 0.17 -6.31 16 3 C 0.22 11.71 2.25 29.85 0.07 11.78 16 4 H 0.01 0.66 7.16 -2.38 -0.02 0.64 16 5 C -0.54 -29.59 8.90 25.60 0.23 -29.36 16 6 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -51.13 11.29 21.45 0.24 -50.88 16 9 Si 0.98 42.01 29.54 68.60 2.03 44.04 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 13 O -0.34 -15.30 6.72 -51.40 -0.35 -15.65 16 14 C 0.45 18.04 5.71 71.24 0.41 18.45 16 15 O -0.53 -23.27 12.98 21.99 0.29 -22.99 16 16 C 0.17 5.34 2.38 44.24 0.11 5.44 16 17 H 0.12 3.94 7.57 -2.39 -0.02 3.92 16 18 N -0.71 -20.63 4.84 -450.16 -2.18 -22.80 16 19 C 0.60 16.83 6.13 86.42 0.53 17.36 16 20 O -0.55 -17.67 13.96 -4.37 -0.06 -17.73 16 21 C -0.30 -6.87 6.45 24.08 0.16 -6.72 16 22 C -0.05 -0.92 10.01 21.72 0.22 -0.70 16 23 C -0.16 -2.07 10.15 21.08 0.21 -1.86 16 24 C -0.21 -2.65 10.92 66.81 0.73 -1.92 16 25 S 0.21 3.65 22.16 -56.49 -1.25 2.40 16 26 C -0.09 -2.63 2.68 -10.80 -0.03 -2.66 16 27 C -0.16 -4.62 8.67 71.98 0.62 -4.00 16 28 C -0.12 -3.15 7.72 71.98 0.56 -2.59 16 29 H 0.04 1.79 7.80 -2.39 -0.02 1.78 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.03 1.39 6.06 -2.38 -0.01 1.38 16 32 H 0.09 4.70 5.95 -2.39 -0.01 4.68 16 33 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 35 H 0.41 11.57 6.91 -92.71 -0.64 10.93 16 36 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.20 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 2.37 5.32 -2.38 -0.01 2.35 16 43 H 0.05 1.21 5.78 -2.39 -0.01 1.19 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 1.60 7.52 -2.38 -0.02 1.59 16 Total: -1.00 -64.02 373.34 4.13 -59.89 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.37 Total: 30.33 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 5.04 Total: -6.60 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -1.94 Total: -73.69 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.12 Total: -56.37 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.25 Total: 2.40 kcal Total: -64.02 4.13 -59.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187905078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.999 kcal (2) G-P(sol) polarization free energy of solvation -64.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds