Wall clock time and date at job start Tue Mar 31 2020 22:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 H 1.09001 * 109.46946 * 304.99558 * 3 2 1 5 5 C 1.50696 * 109.47058 * 184.99771 * 3 2 1 6 6 H 1.07998 * 119.99899 * 239.99747 * 5 3 2 7 7 C 1.37881 * 120.00340 * 59.99662 * 5 3 2 8 8 N 1.31519 * 119.99453 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00387 * 179.97438 * 7 5 3 10 10 H 1.48511 * 109.47036 * 59.99987 * 9 7 5 11 11 H 1.48494 * 109.47392 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47065 * 300.00514 * 9 7 5 13 13 O 1.45198 * 109.47196 * 64.99390 * 3 2 1 14 14 C 1.34225 * 117.00155 * 269.99709 * 13 3 2 15 15 O 1.20833 * 120.00301 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00258 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.47122 * 60.00694 * 16 14 13 18 18 N 1.46500 * 109.47583 * 180.02562 * 16 14 13 19 19 C 1.34770 * 120.00256 * 205.00282 * 18 16 14 20 20 O 1.21706 * 120.00263 * 359.97438 * 19 18 16 21 21 C 1.46587 * 120.00008 * 180.02562 * 19 18 16 22 22 C 1.36648 * 125.45674 * 180.02562 * 21 19 18 23 23 C 1.37478 * 113.29560 * 179.97438 * 22 21 19 24 24 C 1.33814 * 115.10021 * 359.97438 * 23 22 21 25 25 S 1.70624 * 110.95458 * 359.72893 * 24 23 22 26 26 C 1.53006 * 109.47184 * 300.00808 * 16 14 13 27 27 C 1.52997 * 109.47164 * 59.99667 * 26 16 14 28 28 C 1.52997 * 109.47127 * 179.97438 * 26 16 14 29 29 H 1.08998 * 109.47274 * 300.00563 * 1 2 3 30 30 H 1.08999 * 109.46540 * 60.00488 * 1 2 3 31 31 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47274 * 239.99437 * 2 1 3 33 33 H 1.09004 * 109.46839 * 119.99119 * 2 1 3 34 34 H 0.97007 * 119.99515 * 179.97438 * 8 7 5 35 35 H 0.97005 * 119.99374 * 25.00347 * 18 16 14 36 36 H 1.07996 * 123.35163 * 359.96976 * 22 21 19 37 37 H 1.08000 * 122.44930 * 180.02562 * 23 22 21 38 38 H 1.07998 * 124.52455 * 180.02562 * 24 23 22 39 39 H 1.09001 * 109.47002 * 299.99404 * 26 16 14 40 40 H 1.09001 * 109.47375 * 59.99966 * 27 26 16 41 41 H 1.09002 * 109.46777 * 180.02562 * 27 26 16 42 42 H 1.09000 * 109.47140 * 299.99948 * 27 26 16 43 43 H 1.09004 * 109.47261 * 59.99697 * 28 26 16 44 44 H 1.09002 * 109.47153 * 179.97438 * 28 26 16 45 45 H 1.09001 * 109.47289 * 299.99953 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1434 0.8783 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8811 -1.3816 10 1 6.5976 0.1472 -0.2345 11 1 6.3979 0.2176 -2.6506 12 1 6.4995 2.2814 -1.3819 13 8 1.6558 2.0917 1.2406 14 6 0.4728 2.7256 1.2557 15 8 -0.2192 2.7371 0.2652 16 6 0.0069 3.4218 2.5084 17 1 0.7237 4.1960 2.7818 18 7 -1.3036 4.0316 2.2697 19 6 -1.6983 5.0902 3.0045 20 8 -0.9662 5.5393 3.8668 21 6 -3.0098 5.7000 2.7660 22 6 -3.5202 6.7722 3.4420 23 6 -4.7741 7.1384 3.0134 24 6 -5.2747 6.3937 2.0208 25 16 -4.1743 5.1746 1.5579 26 6 -0.1040 2.4047 3.6461 27 6 1.2644 1.7674 3.8956 28 6 -0.5764 3.1117 4.9180 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.8295 -0.0606 -2.9501 35 1 -1.8873 3.6734 1.5826 36 1 -2.9913 7.2812 4.2341 37 1 -5.3152 7.9671 3.4458 38 1 -6.2438 6.5470 1.5694 39 1 -0.8210 1.6305 3.3727 40 1 1.9813 2.5416 4.1690 41 1 1.1852 1.0425 4.7058 42 1 1.6013 1.2638 2.9896 43 1 -1.5512 3.5660 4.7405 44 1 -0.6558 2.3870 5.7284 45 1 0.1408 3.8857 5.1913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187905101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:47 Heat of formation + Delta-G solvation = -99.344315 kcal Electronic energy + Delta-G solvation = -28087.779151 eV Core-core repulsion = 24197.021593 eV Total energy + Delta-G solvation = -3890.757558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64763 -39.44557 -37.79841 -36.28183 -35.72629 -33.68115 -33.25436 -31.42162 -30.17935 -28.09798 -27.01471 -26.70386 -24.90091 -23.29134 -21.76632 -21.37462 -20.14953 -19.85106 -19.34850 -18.89384 -16.98741 -16.90745 -16.30047 -16.01076 -15.80316 -15.57541 -15.12937 -14.99664 -14.52386 -13.92883 -13.58110 -13.35744 -13.03255 -12.90351 -12.86276 -12.62014 -12.55179 -12.41945 -12.28557 -11.89861 -11.58176 -11.50189 -11.31019 -11.22503 -11.19415 -11.02052 -10.82583 -10.71866 -10.49970 -10.24634 -10.13024 -9.88649 -9.73603 -9.39194 -9.23592 -9.04611 -8.88363 -8.85839 -8.48761 -6.22350 -4.29631 0.26638 1.22051 1.63401 2.15350 2.74157 2.79057 3.07258 3.24459 3.28435 3.30907 3.64457 4.29551 4.59697 4.72270 4.84613 5.02329 5.05509 5.09881 5.20170 5.28723 5.49952 5.52534 5.67827 5.77507 5.89765 5.90658 6.01218 6.04748 6.15548 6.19015 6.20441 6.25646 6.26942 6.38483 6.52522 6.78861 6.81528 6.88201 7.10714 7.15674 7.32890 7.56097 7.67355 7.85682 8.01420 8.09721 8.50122 8.81206 9.35721 10.84216 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.002929 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.713539 B = 9557.616263 C =10073.255465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.219 3.781 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.339 6.339 14 C 0.453 3.547 15 O -0.514 6.514 16 C 0.155 3.845 17 H 0.123 0.877 18 N -0.709 5.709 19 C 0.595 3.405 20 O -0.523 6.523 21 C -0.265 4.265 22 C -0.056 4.056 23 C -0.151 4.151 24 C -0.233 4.233 25 S 0.212 5.788 26 C -0.096 4.096 27 C -0.160 4.160 28 C -0.136 4.136 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.043 0.957 34 H 0.267 0.733 35 H 0.407 0.593 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.169 0.831 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.811 7.866 10.152 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.254 6.254 14 C 0.295 3.705 15 O -0.404 6.404 16 C 0.049 3.951 17 H 0.141 0.859 18 N -0.362 5.362 19 C 0.382 3.618 20 O -0.401 6.401 21 C -0.385 4.385 22 C -0.090 4.090 23 C -0.183 4.183 24 C -0.371 4.371 25 S 0.480 5.520 26 C -0.116 4.116 27 C -0.217 4.217 28 C -0.193 4.193 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.244 0.756 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.186 0.814 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.448 6.888 9.134 19.223 hybrid contribution 0.368 1.000 0.328 1.115 sum -15.080 7.887 9.462 19.472 Atomic orbital electron populations 1.21868 0.98443 0.99084 1.00630 1.22025 0.92554 0.99250 1.03492 1.20753 0.95115 0.88803 0.78615 0.93472 1.20993 0.89553 1.39132 1.06344 0.91268 1.24875 0.99224 0.94712 0.95045 1.69879 1.35490 1.37722 1.09444 0.86345 0.83869 0.78527 0.77488 1.19893 1.21060 1.19984 1.86540 1.33479 1.61783 1.43617 1.23068 0.81605 0.77119 0.88718 1.90606 1.55683 1.58490 1.35593 1.20618 0.85769 0.96915 0.91811 0.85907 1.45627 1.18887 1.32344 1.39354 1.16790 0.84600 0.79160 0.81282 1.90846 1.54022 1.62540 1.32653 1.24628 1.00717 1.06150 1.07029 1.20797 0.94591 0.94361 0.99247 1.20046 0.96209 1.02791 0.99235 1.25384 1.05670 1.02307 1.03768 1.83350 1.06068 1.29942 1.32680 1.21407 0.99691 0.96476 0.94022 1.22083 0.94791 1.01056 1.03811 1.21876 1.01612 1.00004 0.95835 0.95030 0.92829 0.94756 0.87292 0.93849 0.92314 0.75644 0.82809 0.83737 0.81384 0.90892 0.92241 0.92649 0.88966 0.93109 0.93020 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.57 37.16 0.32 -2.62 16 2 C -0.14 -3.18 5.49 -26.73 -0.15 -3.33 16 3 C 0.22 5.52 2.25 -27.88 -0.06 5.46 16 4 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.52 -14.07 8.90 -34.44 -0.31 -14.37 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.40 11.29 55.43 0.63 -23.78 16 9 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 13 O -0.34 -7.41 6.72 -39.24 -0.26 -7.68 16 14 C 0.45 8.83 5.71 36.00 0.21 9.04 16 15 O -0.51 -10.89 12.98 -18.76 -0.24 -11.13 16 16 C 0.15 2.46 2.38 -69.08 -0.16 2.29 16 17 H 0.12 2.00 7.58 -51.93 -0.39 1.61 16 18 N -0.71 -10.20 4.84 -56.27 -0.27 -10.48 16 19 C 0.60 8.42 6.14 -12.90 -0.08 8.34 16 20 O -0.52 -8.43 13.96 5.18 0.07 -8.36 16 21 C -0.26 -3.11 6.45 -36.79 -0.24 -3.34 16 22 C -0.06 -0.57 10.01 -40.43 -0.40 -0.98 16 23 C -0.15 -1.23 10.15 -41.41 -0.42 -1.65 16 24 C -0.23 -1.81 10.92 29.18 0.32 -1.49 16 25 S 0.21 2.00 22.16 -107.50 -2.38 -0.38 16 26 C -0.10 -1.36 2.68 -90.62 -0.24 -1.60 16 27 C -0.16 -2.32 8.67 37.16 0.32 -2.00 16 28 C -0.14 -1.77 7.71 37.16 0.29 -1.48 16 29 H 0.03 0.61 6.06 -51.93 -0.31 0.30 16 30 H 0.05 1.16 7.80 -51.93 -0.40 0.75 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 2.82 5.95 -51.93 -0.31 2.51 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.41 5.63 6.91 -40.82 -0.28 5.35 16 36 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.59 5.32 -51.93 -0.28 1.31 16 43 H 0.05 0.68 5.77 -51.93 -0.30 0.38 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -29.31 373.34 -8.96 -38.27 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.39 Total: 8.40 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -0.71 Total: -6.13 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.35 Total: -34.25 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.44 Total: -27.17 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.38 Total: -0.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.31 -8.96 -38.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187905101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.076 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds