Wall clock time and date at job start Tue Mar 31 2020 22:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 H 1.09001 * 109.46946 * 304.99558 * 3 2 1 5 5 C 1.50696 * 109.47058 * 184.99771 * 3 2 1 6 6 H 1.07998 * 119.99899 * 239.99747 * 5 3 2 7 7 C 1.37881 * 120.00340 * 59.99662 * 5 3 2 8 8 N 1.31519 * 119.99453 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00387 * 179.97438 * 7 5 3 10 10 H 1.48511 * 109.47036 * 59.99987 * 9 7 5 11 11 H 1.48494 * 109.47392 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47065 * 300.00514 * 9 7 5 13 13 O 1.45198 * 109.47196 * 64.99390 * 3 2 1 14 14 C 1.34225 * 117.00155 * 269.99709 * 13 3 2 15 15 O 1.20833 * 120.00301 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00258 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.47122 * 60.00694 * 16 14 13 18 18 N 1.46500 * 109.47583 * 180.02562 * 16 14 13 19 19 C 1.34770 * 120.00256 * 205.00282 * 18 16 14 20 20 O 1.21706 * 120.00263 * 359.97438 * 19 18 16 21 21 C 1.46587 * 120.00008 * 180.02562 * 19 18 16 22 22 C 1.36648 * 125.45674 * 180.02562 * 21 19 18 23 23 C 1.37478 * 113.29560 * 179.97438 * 22 21 19 24 24 C 1.33814 * 115.10021 * 359.97438 * 23 22 21 25 25 S 1.70624 * 110.95458 * 359.72893 * 24 23 22 26 26 C 1.53006 * 109.47184 * 300.00808 * 16 14 13 27 27 C 1.52997 * 109.47164 * 59.99667 * 26 16 14 28 28 C 1.52997 * 109.47127 * 179.97438 * 26 16 14 29 29 H 1.08998 * 109.47274 * 300.00563 * 1 2 3 30 30 H 1.08999 * 109.46540 * 60.00488 * 1 2 3 31 31 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47274 * 239.99437 * 2 1 3 33 33 H 1.09004 * 109.46839 * 119.99119 * 2 1 3 34 34 H 0.97007 * 119.99515 * 179.97438 * 8 7 5 35 35 H 0.97005 * 119.99374 * 25.00347 * 18 16 14 36 36 H 1.07996 * 123.35163 * 359.96976 * 22 21 19 37 37 H 1.08000 * 122.44930 * 180.02562 * 23 22 21 38 38 H 1.07998 * 124.52455 * 180.02562 * 24 23 22 39 39 H 1.09001 * 109.47002 * 299.99404 * 26 16 14 40 40 H 1.09001 * 109.47375 * 59.99966 * 27 26 16 41 41 H 1.09002 * 109.46777 * 180.02562 * 27 26 16 42 42 H 1.09000 * 109.47140 * 299.99948 * 27 26 16 43 43 H 1.09004 * 109.47261 * 59.99697 * 28 26 16 44 44 H 1.09002 * 109.47153 * 179.97438 * 28 26 16 45 45 H 1.09001 * 109.47289 * 299.99953 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1434 0.8783 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8811 -1.3816 10 1 6.5976 0.1472 -0.2345 11 1 6.3979 0.2176 -2.6506 12 1 6.4995 2.2814 -1.3819 13 8 1.6558 2.0917 1.2406 14 6 0.4728 2.7256 1.2557 15 8 -0.2192 2.7371 0.2652 16 6 0.0069 3.4218 2.5084 17 1 0.7237 4.1960 2.7818 18 7 -1.3036 4.0316 2.2697 19 6 -1.6983 5.0902 3.0045 20 8 -0.9662 5.5393 3.8668 21 6 -3.0098 5.7000 2.7660 22 6 -3.5202 6.7722 3.4420 23 6 -4.7741 7.1384 3.0134 24 6 -5.2747 6.3937 2.0208 25 16 -4.1743 5.1746 1.5579 26 6 -0.1040 2.4047 3.6461 27 6 1.2644 1.7674 3.8956 28 6 -0.5764 3.1117 4.9180 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.8295 -0.0606 -2.9501 35 1 -1.8873 3.6734 1.5826 36 1 -2.9913 7.2812 4.2341 37 1 -5.3152 7.9671 3.4458 38 1 -6.2438 6.5470 1.5694 39 1 -0.8210 1.6305 3.3727 40 1 1.9813 2.5416 4.1690 41 1 1.1852 1.0425 4.7058 42 1 1.6013 1.2638 2.9896 43 1 -1.5512 3.5660 4.7405 44 1 -0.6558 2.3870 5.7284 45 1 0.1408 3.8857 5.1913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187905101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:47 Heat of formation + Delta-G solvation = -115.006989 kcal Electronic energy + Delta-G solvation = -28088.458336 eV Core-core repulsion = 24197.021593 eV Total energy + Delta-G solvation = -3891.436743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.06116 -40.79103 -38.63585 -37.82295 -37.11219 -35.52595 -34.51109 -33.33436 -31.03386 -29.64641 -28.62550 -27.82046 -25.81067 -25.14386 -23.14033 -22.52733 -21.64164 -21.27091 -20.42895 -19.89663 -18.76995 -18.43050 -17.56083 -17.46477 -17.18781 -16.67370 -16.50828 -16.31715 -16.01625 -15.09601 -14.82434 -14.76229 -14.56861 -14.12081 -13.97484 -13.75062 -13.69455 -13.61584 -13.33253 -13.29265 -13.22804 -13.12166 -12.95998 -12.85358 -12.63411 -12.46707 -12.18666 -11.92436 -11.87047 -11.80544 -11.72979 -11.43414 -11.27145 -11.17920 -10.82576 -10.49793 -10.37922 -9.87927 -9.57131 -8.26515 -6.42451 -0.51219 0.47300 0.94064 1.17616 1.35621 1.41805 1.44917 1.48398 1.55626 2.08474 2.20773 2.42327 3.03430 3.55395 3.60513 3.83767 3.85001 4.13766 4.23788 4.29486 4.35213 4.40108 4.41870 4.55011 4.55788 4.61795 4.83523 4.85069 4.91073 5.00990 5.04197 5.06616 5.11993 5.15107 5.20660 5.22822 5.36511 5.37148 5.42272 5.51777 5.60865 5.69223 5.95688 6.11360 6.21591 6.59468 6.86362 6.94477 7.28082 8.79572 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.002929 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.713539 B = 9557.616263 C =10073.255465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.008 0.992 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.975 3.025 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.272 1.272 13 O -0.340 6.340 14 C 0.450 3.550 15 O -0.532 6.532 16 C 0.165 3.835 17 H 0.118 0.882 18 N -0.709 5.709 19 C 0.597 3.403 20 O -0.549 6.549 21 C -0.303 4.303 22 C -0.049 4.049 23 C -0.158 4.158 24 C -0.214 4.214 25 S 0.209 5.791 26 C -0.090 4.090 27 C -0.156 4.156 28 C -0.125 4.125 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.270 0.730 35 H 0.409 0.591 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.200 0.800 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.146 8.291 11.311 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.026 0.974 5 C -0.586 4.586 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.799 3.201 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.197 1.197 13 O -0.255 6.255 14 C 0.294 3.706 15 O -0.423 6.423 16 C 0.058 3.942 17 H 0.136 0.864 18 N -0.362 5.362 19 C 0.385 3.615 20 O -0.429 6.429 21 C -0.423 4.423 22 C -0.084 4.084 23 C -0.188 4.188 24 C -0.352 4.352 25 S 0.477 5.523 26 C -0.110 4.110 27 C -0.213 4.213 28 C -0.182 4.182 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.173 0.827 37 H 0.191 0.809 38 H 0.217 0.783 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.809 7.316 10.299 21.026 hybrid contribution 0.662 0.957 -0.042 1.165 sum -16.147 8.273 10.257 20.841 Atomic orbital electron populations 1.21721 0.96201 1.00643 1.00174 1.21849 0.94502 0.97831 1.02399 1.20422 0.94393 0.89429 0.78618 0.97446 1.21291 0.90625 1.39843 1.06831 0.91630 1.25721 1.03811 0.94002 0.94474 1.70001 1.37309 1.37930 1.09792 0.85344 0.78254 0.78644 0.77862 1.18892 1.20347 1.19672 1.86566 1.34861 1.62244 1.41829 1.23797 0.80592 0.76494 0.89762 1.90593 1.55940 1.59069 1.36658 1.20575 0.86477 0.96885 0.90231 0.86432 1.45624 1.18145 1.32717 1.39750 1.17112 0.85326 0.78500 0.80534 1.90819 1.55146 1.63207 1.33769 1.24467 1.00552 1.07786 1.09483 1.21056 0.95322 0.93420 0.98602 1.20299 0.95453 1.03675 0.99350 1.25806 1.06117 1.00512 1.02739 1.83378 1.06055 1.30820 1.32096 1.21402 0.99718 0.96073 0.93773 1.22025 0.94830 1.01343 1.03152 1.21766 1.00873 1.00018 0.95579 0.94202 0.94481 0.92108 0.89727 0.93369 0.92102 0.75356 0.82719 0.80871 0.78270 0.90350 0.92259 0.90415 0.91727 0.93599 0.90928 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 8.57 71.98 0.62 -4.75 16 2 C -0.13 -6.14 5.49 30.60 0.17 -5.97 16 3 C 0.22 11.72 2.25 29.85 0.07 11.79 16 4 H 0.01 0.46 7.16 -2.39 -0.02 0.44 16 5 C -0.55 -30.33 8.90 25.60 0.23 -30.10 16 6 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 7 C 0.02 1.08 5.29 84.65 0.45 1.53 16 8 N -0.91 -51.23 11.29 21.45 0.24 -50.99 16 9 Si 0.98 42.49 29.54 68.60 2.03 44.52 16 10 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 O -0.34 -15.34 6.72 -51.37 -0.35 -15.69 16 14 C 0.45 18.05 5.71 71.24 0.41 18.46 16 15 O -0.53 -23.29 12.98 21.94 0.28 -23.00 16 16 C 0.16 5.30 2.38 44.25 0.11 5.41 16 17 H 0.12 3.94 7.58 -2.39 -0.02 3.92 16 18 N -0.71 -20.63 4.84 -450.16 -2.18 -22.81 16 19 C 0.60 16.95 6.14 86.42 0.53 17.48 16 20 O -0.55 -17.90 13.96 -4.37 -0.06 -17.96 16 21 C -0.30 -6.92 6.45 24.08 0.16 -6.77 16 22 C -0.05 -0.93 10.01 21.72 0.22 -0.72 16 23 C -0.16 -2.10 10.15 21.08 0.21 -1.88 16 24 C -0.21 -2.65 10.92 66.81 0.73 -1.92 16 25 S 0.21 3.67 22.16 -56.49 -1.25 2.42 16 26 C -0.09 -2.48 2.68 -10.79 -0.03 -2.51 16 27 C -0.16 -4.43 8.67 71.98 0.62 -3.80 16 28 C -0.13 -3.11 7.71 71.98 0.56 -2.55 16 29 H 0.04 1.54 6.06 -2.39 -0.01 1.53 16 30 H 0.04 1.62 7.80 -2.39 -0.02 1.61 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 4.51 5.95 -2.39 -0.01 4.49 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 35 H 0.41 11.48 6.91 -92.70 -0.64 10.84 16 36 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 2.23 5.32 -2.39 -0.01 2.22 16 43 H 0.04 1.19 5.77 -2.38 -0.01 1.17 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.55 7.53 -2.39 -0.02 1.53 16 Total: -1.00 -64.91 373.34 4.13 -60.78 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.37 Total: 29.05 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 5.04 Total: -6.31 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -1.93 Total: -73.80 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -0.12 Total: -56.65 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.25 Total: 2.42 kcal Total: -64.91 4.13 -60.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187905101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.230 kcal (2) G-P(sol) polarization free energy of solvation -64.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds