Wall clock time and date at job start Tue Mar 31 2020 22:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 H 1.09002 * 109.47421 * 305.00495 * 3 2 1 5 5 C 1.53003 * 109.47068 * 65.00047 * 3 2 1 6 6 C 1.50696 * 109.47511 * 185.00284 * 3 2 1 7 7 C 1.38230 * 120.00309 * 120.00024 * 6 3 2 8 8 C 1.38235 * 120.00326 * 179.97438 * 7 6 3 9 9 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 10 10 S 1.76199 * 120.00037 * 179.97438 * 9 8 7 11 11 O 1.42106 * 106.40265 * 203.53950 * 10 9 8 12 12 O 1.42097 * 106.40472 * 336.46722 * 10 9 8 13 13 N 1.65608 * 107.21829 * 90.00408 * 10 9 8 14 14 C 1.47060 * 136.05779 * 269.63184 * 13 10 9 15 15 C 1.53227 * 88.08500 * 207.19936 * 14 13 10 16 16 O 1.42907 * 114.19883 * 87.72783 * 15 14 13 17 17 C 1.50705 * 114.32845 * 220.47022 * 15 14 13 18 18 H 1.07996 * 120.00240 * 93.75742 * 17 15 14 19 19 C 1.37878 * 119.99813 * 273.75629 * 17 15 14 20 20 N 1.31513 * 120.00148 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99984 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46855 * 60.00162 * 21 19 17 23 23 H 1.48498 * 109.47171 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47133 * 300.00455 * 21 19 17 25 25 C 1.47065 * 136.05454 * 89.99390 * 13 10 9 26 26 C 1.38240 * 120.00061 * 0.07178 * 9 8 7 27 27 C 1.38234 * 120.00081 * 359.88514 * 26 9 8 28 28 H 1.08996 * 109.47046 * 59.99531 * 1 2 3 29 29 H 1.08993 * 109.47332 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47001 * 299.99802 * 1 2 3 31 31 H 1.08999 * 109.47001 * 240.00198 * 2 1 3 32 32 H 1.08996 * 109.47046 * 120.00468 * 2 1 3 33 33 H 1.09001 * 109.47446 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.46984 * 300.00380 * 5 3 2 35 35 H 1.09002 * 109.47087 * 60.00249 * 5 3 2 36 36 H 1.08000 * 120.00376 * 359.97438 * 7 6 3 37 37 H 1.08000 * 120.00616 * 179.72578 * 8 7 6 38 38 H 1.09003 * 113.46693 * 321.93606 * 14 13 10 39 39 H 1.09007 * 113.46803 * 92.36690 * 14 13 10 40 40 H 0.96694 * 113.99939 * 86.30357 * 16 15 14 41 41 H 0.96999 * 120.00046 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.47218 * 267.62322 * 25 13 10 43 43 H 1.08998 * 113.47123 * 38.01610 * 25 13 10 44 44 H 1.08005 * 120.00107 * 179.97438 * 26 9 8 45 45 H 1.07999 * 120.00147 * 180.10835 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4442 -0.1239 7 6 4.1463 2.0735 -1.1961 8 6 5.5240 2.0756 -1.3094 9 6 6.2973 1.4488 -0.3503 10 16 8.0533 1.4509 -0.4951 11 8 8.5186 0.3326 0.2481 12 8 8.3422 1.6430 -1.8731 13 7 8.6085 2.7985 0.2913 14 6 8.8976 4.1935 -0.0735 15 6 9.9256 4.2235 1.0624 16 8 11.2300 3.7791 0.6837 17 6 9.9396 5.5062 1.8534 18 1 9.3539 5.5899 2.7568 19 6 10.7004 6.5728 1.4237 20 7 11.4133 6.4710 0.3232 21 14 10.7172 8.1630 2.4037 22 1 11.2191 7.8938 3.7752 23 1 11.6069 9.1467 1.7358 24 1 9.3397 8.7122 2.4797 25 6 9.0354 3.1251 1.6602 26 6 5.6929 0.8187 0.7215 27 6 4.3153 0.8174 0.8353 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9983 3.1543 1.3073 34 1 0.5490 2.1252 1.3970 35 1 2.0700 1.5874 2.1492 36 1 3.5422 2.5635 -1.9453 37 1 5.9960 2.5634 -2.1494 38 1 9.3426 4.3002 -1.0628 39 1 8.0554 4.8672 0.0853 40 1 11.7882 4.4733 0.3076 41 1 11.9482 7.2215 0.0207 42 1 8.2304 3.5113 2.2855 43 1 9.5967 2.3248 2.1425 44 1 6.2971 0.3287 1.4707 45 1 3.8432 0.3266 1.6735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189066682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:33 Heat of formation + Delta-G solvation = -74.791398 kcal Electronic energy + Delta-G solvation = -27486.938691 eV Core-core repulsion = 23597.245827 eV Total energy + Delta-G solvation = -3889.692864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.78496 -38.64010 -36.75912 -36.42148 -35.39258 -33.95565 -32.14097 -31.53100 -31.11595 -29.08673 -27.85944 -25.28842 -25.08839 -24.68280 -23.20524 -22.53567 -20.18854 -19.69224 -18.64636 -17.58285 -17.41636 -16.54645 -16.11660 -15.80423 -15.35115 -15.04806 -14.72503 -14.58810 -14.29744 -14.17966 -13.75372 -13.58641 -13.35058 -13.30155 -13.05034 -12.99918 -12.51647 -12.39823 -12.10772 -12.04651 -11.67776 -11.66137 -11.64894 -11.48697 -11.45775 -11.28594 -11.09387 -11.05120 -10.88247 -10.81687 -10.50305 -10.47102 -10.21860 -9.32329 -9.16931 -9.08596 -8.76731 -8.53310 -8.05350 -6.35933 -4.46561 0.63986 0.93748 1.25473 3.17497 3.23575 3.24315 3.26903 3.61684 4.18575 4.22952 4.29312 4.38711 4.53167 4.67344 4.81336 4.85184 4.90422 5.01444 5.08679 5.15696 5.21692 5.28262 5.37925 5.48908 5.54981 5.60535 5.65327 5.65674 5.71436 5.86481 5.92073 5.97937 6.04625 6.05882 6.10925 6.12777 6.35134 6.37606 6.41065 6.69998 6.78571 6.81144 7.03203 7.50518 7.68419 7.86414 8.56348 9.23984 9.56476 10.70473 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003017 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.845677 B = 9279.459392 C =10392.962417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.059 4.059 4 H 0.081 0.919 5 C -0.147 4.147 6 C -0.030 4.030 7 C -0.141 4.141 8 C -0.016 4.016 9 C -0.680 4.680 10 S 2.708 3.292 11 O -0.963 6.963 12 O -0.961 6.961 13 N -1.030 6.030 14 C 0.101 3.899 15 C 0.245 3.755 16 O -0.572 6.572 17 C -0.533 4.533 18 H 0.072 0.928 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.129 3.871 26 C -0.018 4.018 27 C -0.139 4.139 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.394 0.606 41 H 0.275 0.725 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.138 0.862 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.804 -7.455 -0.044 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.077 4.077 4 H 0.099 0.901 5 C -0.204 4.204 6 C -0.030 4.030 7 C -0.160 4.160 8 C -0.035 4.035 9 C -0.764 4.764 10 S 2.800 3.200 11 O -0.954 6.954 12 O -0.951 6.951 13 N -0.871 5.871 14 C -0.025 4.025 15 C 0.201 3.799 16 O -0.385 6.385 17 C -0.572 4.572 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.537 5.537 21 Si 0.736 3.264 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.200 1.200 25 C 0.004 3.996 26 C -0.037 4.037 27 C -0.158 4.158 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.251 0.749 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.156 0.844 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.514 -8.769 -0.516 20.492 hybrid contribution -0.680 1.608 0.296 1.771 sum -19.194 -7.160 -0.219 20.487 Atomic orbital electron populations 1.21826 0.95500 1.01747 1.02003 1.21594 0.95957 0.95351 1.02568 1.20309 0.90534 0.97220 0.99637 0.90089 1.21905 1.01429 1.00775 0.96258 1.20153 0.95447 0.93877 0.93535 1.21161 0.94713 1.01478 0.98662 1.20937 0.93918 0.92770 0.95905 1.31487 1.28687 1.11933 1.04334 1.01461 0.73044 0.72377 0.73124 1.93527 1.79427 1.49317 1.73086 1.93534 1.83675 1.85901 1.32020 1.59956 1.78181 1.25196 1.23726 1.23680 0.99387 0.76860 1.02528 1.19512 0.81055 0.89930 0.89448 1.86032 1.25487 1.42532 1.84418 1.21441 1.28792 0.96492 1.10475 0.90991 1.25094 0.94149 0.99312 0.94604 1.69265 1.29293 1.33101 1.22055 0.86376 0.78210 0.81740 0.80069 1.19875 1.21031 1.19963 1.22898 0.96356 0.98018 0.82331 1.20922 0.95221 0.92915 0.94656 1.21065 0.93544 1.01507 0.99668 0.92692 0.92652 0.92339 0.91740 0.91566 0.92293 0.91903 0.92236 0.85373 0.84362 0.91335 0.90566 0.74933 0.91495 0.90036 0.91109 0.84413 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.12 -0.86 5.14 -26.74 -0.14 -1.00 16 3 C -0.06 -0.48 2.56 -91.77 -0.24 -0.71 16 4 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 5 C -0.15 -1.10 8.76 37.16 0.33 -0.78 16 6 C -0.03 -0.33 4.78 -104.63 -0.50 -0.83 16 7 C -0.14 -1.69 9.67 -39.59 -0.38 -2.07 16 8 C -0.02 -0.23 9.52 -39.58 -0.38 -0.61 16 9 C -0.68 -10.73 5.97 -39.58 -0.24 -10.97 16 10 S 2.71 51.75 6.27 -107.50 -0.67 51.07 16 11 O -0.96 -20.11 17.28 -57.17 -0.99 -21.10 16 12 O -0.96 -20.48 17.28 -57.17 -0.99 -21.47 16 13 N -1.03 -20.92 4.24 -125.34 -0.53 -21.45 16 14 C 0.10 2.20 8.14 -8.65 -0.07 2.13 16 15 C 0.24 5.86 1.57 -91.39 -0.14 5.71 16 16 O -0.57 -14.92 13.54 -35.23 -0.48 -15.39 16 17 C -0.53 -13.15 8.69 -34.44 -0.30 -13.45 16 18 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 19 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 20 N -0.90 -22.85 11.01 55.43 0.61 -22.24 16 21 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C 0.13 2.65 8.15 -8.51 -0.07 2.58 16 26 C -0.02 -0.25 9.52 -39.58 -0.38 -0.63 16 27 C -0.14 -1.62 8.76 -39.58 -0.35 -1.97 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.48 7.57 -51.93 -0.39 0.09 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 35 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 36 H 0.13 1.20 7.95 -52.49 -0.42 0.78 16 37 H 0.14 1.90 7.61 -52.49 -0.40 1.50 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 40 H 0.39 10.40 6.32 45.56 0.29 10.69 16 41 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 42 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 43 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.14 1.81 7.62 -52.48 -0.40 1.41 16 45 H 0.13 1.17 7.16 -52.49 -0.38 0.80 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -30.04 380.59 -11.01 -41.05 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.09 Total: 11.03 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.59 Total: -21.48 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.08 Total: -43.69 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -2.45 Total: -57.96 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 16 Polarization: 51.75 SS G_CDS: -0.67 Total: 51.07 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.04 -11.01 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189066682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.737 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds