Wall clock time and date at job start Tue Mar 31 2020 22:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 H 1.09002 * 109.47421 * 305.00495 * 3 2 1 5 5 C 1.53003 * 109.47068 * 65.00047 * 3 2 1 6 6 C 1.50696 * 109.47511 * 185.00284 * 3 2 1 7 7 C 1.38230 * 120.00309 * 120.00024 * 6 3 2 8 8 C 1.38235 * 120.00326 * 179.97438 * 7 6 3 9 9 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 10 10 S 1.76199 * 120.00037 * 179.97438 * 9 8 7 11 11 O 1.42106 * 106.40265 * 203.53950 * 10 9 8 12 12 O 1.42097 * 106.40472 * 336.46722 * 10 9 8 13 13 N 1.65608 * 107.21829 * 90.00408 * 10 9 8 14 14 C 1.47060 * 136.05779 * 269.63184 * 13 10 9 15 15 C 1.53227 * 88.08500 * 207.19936 * 14 13 10 16 16 O 1.42907 * 114.19883 * 87.72783 * 15 14 13 17 17 C 1.50705 * 114.32845 * 220.47022 * 15 14 13 18 18 H 1.07996 * 120.00240 * 93.75742 * 17 15 14 19 19 C 1.37878 * 119.99813 * 273.75629 * 17 15 14 20 20 N 1.31513 * 120.00148 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99984 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46855 * 60.00162 * 21 19 17 23 23 H 1.48498 * 109.47171 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47133 * 300.00455 * 21 19 17 25 25 C 1.47065 * 136.05454 * 89.99390 * 13 10 9 26 26 C 1.38240 * 120.00061 * 0.07178 * 9 8 7 27 27 C 1.38234 * 120.00081 * 359.88514 * 26 9 8 28 28 H 1.08996 * 109.47046 * 59.99531 * 1 2 3 29 29 H 1.08993 * 109.47332 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47001 * 299.99802 * 1 2 3 31 31 H 1.08999 * 109.47001 * 240.00198 * 2 1 3 32 32 H 1.08996 * 109.47046 * 120.00468 * 2 1 3 33 33 H 1.09001 * 109.47446 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.46984 * 300.00380 * 5 3 2 35 35 H 1.09002 * 109.47087 * 60.00249 * 5 3 2 36 36 H 1.08000 * 120.00376 * 359.97438 * 7 6 3 37 37 H 1.08000 * 120.00616 * 179.72578 * 8 7 6 38 38 H 1.09003 * 113.46693 * 321.93606 * 14 13 10 39 39 H 1.09007 * 113.46803 * 92.36690 * 14 13 10 40 40 H 0.96694 * 113.99939 * 86.30357 * 16 15 14 41 41 H 0.96999 * 120.00046 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.47218 * 267.62322 * 25 13 10 43 43 H 1.08998 * 113.47123 * 38.01610 * 25 13 10 44 44 H 1.08005 * 120.00107 * 179.97438 * 26 9 8 45 45 H 1.07999 * 120.00147 * 180.10835 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4442 -0.1239 7 6 4.1463 2.0735 -1.1961 8 6 5.5240 2.0756 -1.3094 9 6 6.2973 1.4488 -0.3503 10 16 8.0533 1.4509 -0.4951 11 8 8.5186 0.3326 0.2481 12 8 8.3422 1.6430 -1.8731 13 7 8.6085 2.7985 0.2913 14 6 8.8976 4.1935 -0.0735 15 6 9.9256 4.2235 1.0624 16 8 11.2300 3.7791 0.6837 17 6 9.9396 5.5062 1.8534 18 1 9.3539 5.5899 2.7568 19 6 10.7004 6.5728 1.4237 20 7 11.4133 6.4710 0.3232 21 14 10.7172 8.1630 2.4037 22 1 11.2191 7.8938 3.7752 23 1 11.6069 9.1467 1.7358 24 1 9.3397 8.7122 2.4797 25 6 9.0354 3.1251 1.6602 26 6 5.6929 0.8187 0.7215 27 6 4.3153 0.8174 0.8353 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9983 3.1543 1.3073 34 1 0.5490 2.1252 1.3970 35 1 2.0700 1.5874 2.1492 36 1 3.5422 2.5635 -1.9453 37 1 5.9960 2.5634 -2.1494 38 1 9.3426 4.3002 -1.0628 39 1 8.0554 4.8672 0.0853 40 1 11.7882 4.4733 0.3076 41 1 11.9482 7.2215 0.0207 42 1 8.2304 3.5113 2.2855 43 1 9.5967 2.3248 2.1425 44 1 6.2971 0.3287 1.4707 45 1 3.8432 0.3266 1.6735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189066682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:32 Heat of formation + Delta-G solvation = -95.009039 kcal Electronic energy + Delta-G solvation = -27487.815394 eV Core-core repulsion = 23597.245827 eV Total energy + Delta-G solvation = -3890.569567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.71271 -40.38680 -38.37491 -37.17662 -36.99333 -35.84416 -34.07318 -32.34865 -32.09788 -29.78977 -29.63137 -26.78739 -26.51594 -25.94089 -24.12689 -23.44367 -21.49274 -20.87573 -20.04877 -19.37501 -18.86884 -18.19058 -17.36593 -17.03274 -16.76028 -16.26572 -16.02956 -15.75823 -15.50347 -15.40310 -14.96352 -14.87637 -14.72168 -14.57125 -14.13004 -13.99541 -13.86999 -13.40448 -13.34011 -13.29159 -13.27913 -13.25054 -12.93476 -12.76282 -12.64924 -12.55872 -12.30665 -12.22148 -12.21066 -12.12237 -11.69241 -11.63130 -11.38612 -11.09134 -10.63612 -10.30431 -10.18729 -10.09325 -9.79552 -8.22152 -6.39667 -0.75161 -0.25222 0.25584 1.50806 1.52592 1.60270 1.87797 2.42882 2.45468 2.77408 2.96904 3.09199 3.53719 3.64397 3.70678 3.87630 3.98877 4.11946 4.26426 4.28669 4.32966 4.38880 4.39552 4.56363 4.63817 4.68122 4.70430 4.72117 4.75941 4.89973 4.98346 4.99000 5.02025 5.07733 5.12792 5.13709 5.17573 5.22880 5.24493 5.31400 5.51536 5.54449 5.71372 5.80940 5.81688 6.00101 6.67725 7.33526 7.54231 8.83744 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003017 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.845677 B = 9279.459392 C =10392.962417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.056 4.056 4 H 0.092 0.908 5 C -0.146 4.146 6 C -0.020 4.020 7 C -0.141 4.141 8 C -0.033 4.033 9 C -0.687 4.687 10 S 2.717 3.283 11 O -0.987 6.987 12 O -0.992 6.992 13 N -1.037 6.037 14 C 0.109 3.891 15 C 0.215 3.785 16 O -0.589 6.589 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.026 3.974 20 N -0.922 5.922 21 Si 0.973 3.027 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.136 3.864 26 C -0.031 4.031 27 C -0.135 4.135 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.388 0.612 41 H 0.275 0.725 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.142 0.858 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.260 -7.219 1.107 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.074 4.074 4 H 0.110 0.890 5 C -0.203 4.203 6 C -0.021 4.021 7 C -0.159 4.159 8 C -0.052 4.052 9 C -0.777 4.777 10 S 2.815 3.185 11 O -0.978 6.978 12 O -0.983 6.983 13 N -0.876 5.876 14 C -0.017 4.017 15 C 0.171 3.829 16 O -0.402 6.402 17 C -0.586 4.586 18 H 0.099 0.901 19 C -0.174 4.174 20 N -0.564 5.564 21 Si 0.798 3.202 22 H -0.197 1.197 23 H -0.213 1.213 24 H -0.190 1.190 25 C 0.011 3.989 26 C -0.050 4.050 27 C -0.154 4.154 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.174 0.826 37 H 0.154 0.846 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.243 0.757 41 H 0.085 0.915 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.159 0.841 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.917 -8.538 0.643 23.530 hybrid contribution 0.253 1.447 -0.085 1.471 sum -21.664 -7.091 0.558 22.802 Atomic orbital electron populations 1.21811 0.94358 1.02194 1.02510 1.21590 0.96931 0.94515 1.02369 1.20385 0.88247 0.98129 1.00638 0.88958 1.21917 1.02563 1.00157 0.95702 1.20585 0.97203 0.91882 0.92390 1.21493 0.93739 1.01135 0.99551 1.21082 0.95220 0.93189 0.95725 1.30743 1.25431 1.15015 1.06538 1.00710 0.74328 0.71430 0.72008 1.93486 1.80995 1.49976 1.73328 1.93486 1.85096 1.86083 1.33605 1.59809 1.79614 1.24650 1.23492 1.23476 0.99395 0.78149 1.00703 1.19934 0.80637 0.91353 0.90940 1.86015 1.26840 1.42752 1.84597 1.21733 1.29063 0.96885 1.10896 0.90066 1.25861 0.93860 1.02282 0.95412 1.69357 1.29885 1.33827 1.23289 0.85378 0.78367 0.78000 0.78477 1.19719 1.21256 1.19036 1.22911 0.96482 0.96857 0.82653 1.21108 0.96601 0.93057 0.94255 1.21384 0.92467 1.00963 1.00552 0.92384 0.92316 0.91639 0.92465 0.91336 0.93042 0.90270 0.92063 0.82605 0.84638 0.93391 0.88849 0.75655 0.91504 0.87053 0.91408 0.84069 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 71.98 0.70 -0.61 16 2 C -0.12 -1.31 5.14 30.59 0.16 -1.16 16 3 C -0.06 -0.70 2.56 -11.54 -0.03 -0.73 16 4 H 0.09 1.01 7.88 -2.39 -0.02 0.99 16 5 C -0.15 -1.65 8.76 71.98 0.63 -1.02 16 6 C -0.02 -0.38 4.78 -19.87 -0.09 -0.48 16 7 C -0.14 -3.00 9.67 22.27 0.22 -2.78 16 8 C -0.03 -0.91 9.52 22.27 0.21 -0.70 16 9 C -0.69 -21.37 5.97 22.27 0.13 -21.24 16 10 S 2.72 106.33 6.27 -56.49 -0.35 105.97 16 11 O -0.99 -42.16 17.28 -128.00 -2.21 -44.37 16 12 O -0.99 -43.90 17.28 -128.00 -2.21 -46.11 16 13 N -1.04 -42.77 4.24 -550.95 -2.33 -45.11 16 14 C 0.11 4.84 8.14 83.09 0.68 5.52 16 15 C 0.21 10.44 1.57 -11.29 -0.02 10.42 16 16 O -0.59 -31.92 13.54 -148.98 -2.02 -33.94 16 17 C -0.55 -26.95 8.69 25.60 0.22 -26.73 16 18 H 0.08 3.74 7.81 -2.91 -0.02 3.72 16 19 C 0.03 1.27 5.39 84.66 0.46 1.73 16 20 N -0.92 -47.92 11.01 21.45 0.24 -47.68 16 21 Si 0.97 39.21 29.54 68.60 2.03 41.23 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.29 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 25 C 0.14 5.57 8.15 83.18 0.68 6.25 16 26 C -0.03 -0.82 9.52 22.27 0.21 -0.61 16 27 C -0.14 -2.77 8.76 22.27 0.20 -2.57 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.48 6.56 -2.39 -0.02 0.47 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.75 7.57 -2.39 -0.02 0.73 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.66 6.56 -2.39 -0.02 0.64 16 35 H 0.06 0.68 7.39 -2.39 -0.02 0.66 16 36 H 0.16 2.40 7.95 -2.91 -0.02 2.38 16 37 H 0.14 3.74 7.61 -2.91 -0.02 3.72 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 3.77 8.10 -2.38 -0.02 3.75 16 40 H 0.39 21.43 6.32 -74.06 -0.47 20.96 16 41 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 42 H 0.11 3.84 8.10 -2.39 -0.02 3.82 16 43 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.14 3.58 7.62 -2.91 -0.02 3.56 16 45 H 0.16 2.28 7.16 -2.91 -0.02 2.26 16 Total: -1.00 -65.45 380.59 -1.99 -67.44 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 0.53 Total: 37.27 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 4.34 Total: -34.71 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -2.10 Total: -92.79 kcal Atomic # 8 Polarization: -117.98 SS G_CDS: -6.44 Total: -124.42 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: 106.33 SS G_CDS: -0.35 Total: 105.97 kcal Total: -65.45 -1.99 -67.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189066682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.569 kcal (2) G-P(sol) polarization free energy of solvation -65.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds