Wall clock time and date at job start Tue Mar 31 2020 22:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53005 * 109.46867 * 294.99684 * 3 2 1 6 6 C 1.50700 * 109.46738 * 175.00110 * 3 2 1 7 7 C 1.38230 * 120.00271 * 59.72403 * 6 3 2 8 8 C 1.38235 * 120.00002 * 179.80644 * 7 6 3 9 9 C 1.38233 * 120.00321 * 0.40184 * 8 7 6 10 10 S 1.76202 * 120.00462 * 179.83417 * 9 8 7 11 11 O 1.42097 * 106.40187 * 23.55941 * 10 9 8 12 12 O 1.42096 * 106.40108 * 156.48126 * 10 9 8 13 13 N 1.65602 * 107.21520 * 270.01970 * 10 9 8 14 14 C 1.47067 * 136.05578 * 269.62643 * 13 10 9 15 15 C 1.53243 * 88.08238 * 207.20459 * 14 13 10 16 16 O 1.42894 * 114.19411 * 87.72829 * 15 14 13 17 17 C 1.50693 * 114.32603 * 220.47252 * 15 14 13 18 18 H 1.07998 * 120.00304 * 93.76029 * 17 15 14 19 19 C 1.37882 * 119.99998 * 273.75660 * 17 15 14 20 20 N 1.31513 * 119.99781 * 0.02562 * 19 17 15 21 21 Si 1.86794 * 120.00114 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47161 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47258 * 120.00366 * 21 19 17 24 24 H 1.48506 * 109.47419 * 240.00143 * 21 19 17 25 25 C 1.47068 * 136.05744 * 90.00198 * 13 10 9 26 26 C 1.38242 * 119.99814 * 359.84998 * 9 8 7 27 27 C 1.38233 * 119.99955 * 239.99484 * 6 3 2 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09004 * 109.46908 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.47443 * 300.00098 * 5 3 2 35 35 H 1.09001 * 109.47099 * 60.00379 * 5 3 2 36 36 H 1.07999 * 120.00039 * 0.02562 * 7 6 3 37 37 H 1.08005 * 120.00020 * 180.23326 * 8 7 6 38 38 H 1.08997 * 113.46865 * 321.93549 * 14 13 10 39 39 H 1.08999 * 113.46625 * 92.38231 * 14 13 10 40 40 H 0.96701 * 114.00206 * 86.30458 * 16 15 14 41 41 H 0.97003 * 119.99948 * 179.97438 * 20 19 17 42 42 H 1.09005 * 113.46527 * 267.62102 * 25 13 10 43 43 H 1.09000 * 113.46748 * 38.00145 * 25 13 10 44 44 H 1.07992 * 120.00016 * 179.97438 * 26 9 8 45 45 H 1.08004 * 119.99720 * 359.97438 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4442 0.1238 7 6 4.3149 0.8117 -0.8318 8 6 5.6927 0.8168 -0.7203 9 6 6.2972 1.4472 0.3512 10 16 8.0533 1.4498 0.4956 11 8 8.5641 1.2570 -0.8162 12 8 8.3878 2.5703 1.3030 13 7 8.4757 0.1047 1.3644 14 6 8.6802 -0.2174 2.7847 15 6 9.6527 -1.3160 2.3424 16 8 11.0007 -0.8723 2.1752 17 6 9.5404 -2.5974 3.1274 18 1 8.9110 -3.3979 2.7674 19 6 10.2411 -2.7480 4.3053 20 7 11.0072 -1.7731 4.7438 21 14 10.1025 -4.3366 5.2780 22 1 9.1845 -5.2688 4.5753 23 1 11.4441 -4.9615 5.3994 24 1 9.5689 -4.0429 6.6324 25 6 8.8178 -1.2916 1.0545 26 6 5.5240 2.0753 1.3096 27 6 4.1463 2.0735 1.1960 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9989 3.1541 -1.3076 34 1 2.0698 1.5874 -2.1492 35 1 0.5489 2.1252 -1.3970 36 1 3.8426 0.3166 -1.6673 37 1 6.2969 0.3258 -1.4689 38 1 9.1595 0.5839 3.3469 39 1 7.7860 -0.6013 3.2758 40 1 11.5239 -0.8888 2.9882 41 1 11.4999 -1.8789 5.5727 42 1 7.9606 -1.9645 1.0802 43 1 9.4130 -1.4019 0.1481 44 1 5.9961 2.5674 2.1469 45 1 3.5421 2.5643 1.9447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189066703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:37 Heat of formation + Delta-G solvation = -74.859263 kcal Electronic energy + Delta-G solvation = -27515.446060 eV Core-core repulsion = 23625.750253 eV Total energy + Delta-G solvation = -3889.695807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.78466 -38.64072 -36.76026 -36.41524 -35.39396 -33.95669 -32.14232 -31.51950 -31.11473 -29.09594 -27.86169 -25.28655 -25.08909 -24.68438 -23.20271 -22.52821 -20.18434 -19.69414 -18.64674 -17.58466 -17.41637 -16.54342 -16.11907 -15.80702 -15.35031 -15.04662 -14.72245 -14.58174 -14.27063 -14.19566 -13.76691 -13.61119 -13.34144 -13.19792 -13.14867 -12.97283 -12.52377 -12.40452 -12.11137 -12.04782 -11.67873 -11.65800 -11.65013 -11.49719 -11.45293 -11.25706 -11.09897 -11.08112 -10.87384 -10.79021 -10.49252 -10.46426 -10.21243 -9.32463 -9.16954 -9.08598 -8.77090 -8.53526 -8.05069 -6.36407 -4.46824 0.63942 0.93777 1.25462 3.14989 3.23814 3.25661 3.28147 3.61612 4.18555 4.23483 4.29108 4.38999 4.53352 4.68875 4.81601 4.85195 4.90484 5.02166 5.08837 5.16071 5.21488 5.28284 5.37983 5.48847 5.54587 5.62007 5.64309 5.66120 5.73757 5.86455 5.92130 5.98667 6.04637 6.05829 6.10850 6.12856 6.35076 6.37599 6.40983 6.69900 6.78566 6.81085 7.03193 7.50427 7.68326 7.86426 8.56731 9.23894 9.56393 10.70041 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003177 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.326385 B = 8810.667820 C =10176.717285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.059 4.059 4 H 0.081 0.919 5 C -0.146 4.146 6 C -0.030 4.030 7 C -0.139 4.139 8 C -0.018 4.018 9 C -0.680 4.680 10 S 2.708 3.292 11 O -0.963 6.963 12 O -0.961 6.961 13 N -1.030 6.030 14 C 0.101 3.899 15 C 0.244 3.756 16 O -0.571 6.571 17 C -0.532 4.532 18 H 0.073 0.927 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.909 3.091 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.129 3.871 26 C -0.016 4.016 27 C -0.141 4.141 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.394 0.606 41 H 0.273 0.727 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.139 0.861 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.235 4.297 -7.200 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.077 4.077 4 H 0.099 0.901 5 C -0.203 4.203 6 C -0.030 4.030 7 C -0.158 4.158 8 C -0.037 4.037 9 C -0.764 4.764 10 S 2.800 3.200 11 O -0.954 6.954 12 O -0.951 6.951 13 N -0.871 5.871 14 C -0.025 4.025 15 C 0.200 3.800 16 O -0.384 6.384 17 C -0.571 4.571 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.537 5.537 21 Si 0.736 3.264 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.207 1.207 25 C 0.004 3.996 26 C -0.035 4.035 27 C -0.160 4.160 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.251 0.749 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.156 0.844 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.838 5.283 -8.151 20.311 hybrid contribution -0.789 -0.929 1.284 1.771 sum -18.627 4.354 -6.867 20.324 Atomic orbital electron populations 1.21825 0.95513 1.01810 1.01909 1.21599 0.95942 0.95261 1.02718 1.20310 0.90534 0.97328 0.99526 0.90088 1.21903 1.01450 1.00609 0.96358 1.20152 0.95448 0.93866 0.93549 1.21062 0.93530 1.01406 0.99782 1.20920 0.95176 0.92978 0.94639 1.31489 1.28831 1.11966 1.04156 1.01455 0.73247 0.72478 0.72811 1.93526 1.77931 1.85966 1.37940 1.93534 1.82663 1.49026 1.69910 1.59958 1.81858 1.24413 1.20840 1.23682 1.00133 0.99486 0.79159 1.19522 0.80664 0.90241 0.89577 1.86030 1.23001 1.88551 1.40861 1.21521 1.28547 1.00688 1.06344 0.90883 1.25098 0.94051 0.97116 0.96931 1.69284 1.29301 1.32078 1.23027 0.86273 0.78188 0.82500 0.79466 1.19480 1.20660 1.20735 1.22898 0.97493 0.78353 1.00852 1.20937 0.93876 0.92778 0.95939 1.21163 0.94701 1.01568 0.98584 0.92586 0.92703 0.92427 0.91556 0.91566 0.92463 0.92258 0.91876 0.85414 0.84416 0.91332 0.90566 0.74933 0.91615 0.90033 0.91108 0.84367 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.90 5.14 -26.73 -0.14 -1.04 16 3 C -0.06 -0.48 2.56 -91.77 -0.24 -0.71 16 4 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 5 C -0.15 -1.05 8.76 37.16 0.33 -0.72 16 6 C -0.03 -0.33 4.78 -104.63 -0.50 -0.83 16 7 C -0.14 -1.62 8.76 -39.59 -0.35 -1.97 16 8 C -0.02 -0.25 9.52 -39.58 -0.38 -0.63 16 9 C -0.68 -10.73 5.97 -39.58 -0.24 -10.97 16 10 S 2.71 51.75 6.27 -107.50 -0.67 51.07 16 11 O -0.96 -20.11 17.28 -57.17 -0.99 -21.10 16 12 O -0.96 -20.48 17.28 -57.17 -0.99 -21.47 16 13 N -1.03 -20.91 4.24 -125.30 -0.53 -21.44 16 14 C 0.10 2.20 8.14 -8.63 -0.07 2.13 16 15 C 0.24 5.84 1.57 -91.39 -0.14 5.69 16 16 O -0.57 -14.88 13.54 -35.23 -0.48 -15.36 16 17 C -0.53 -13.12 8.69 -34.44 -0.30 -13.42 16 18 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 20 N -0.90 -22.81 11.01 55.43 0.61 -22.20 16 21 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 C 0.13 2.65 8.15 -8.50 -0.07 2.58 16 26 C -0.02 -0.23 9.52 -39.58 -0.38 -0.61 16 27 C -0.14 -1.69 9.67 -39.58 -0.38 -2.07 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 31 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.42 7.40 -51.93 -0.38 0.04 16 35 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 36 H 0.13 1.17 7.16 -52.49 -0.38 0.80 16 37 H 0.14 1.81 7.62 -52.48 -0.40 1.41 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 40 H 0.39 10.39 6.33 45.56 0.29 10.68 16 41 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 42 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 43 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.14 1.90 7.62 -52.49 -0.40 1.50 16 45 H 0.13 1.20 7.95 -52.48 -0.42 0.78 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -30.06 380.60 -11.01 -41.08 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.09 Total: 10.99 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.59 Total: -21.52 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.08 Total: -43.65 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -2.45 Total: -57.93 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 16 Polarization: 51.75 SS G_CDS: -0.67 Total: 51.07 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.06 -11.01 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189066703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.783 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds