Wall clock time and date at job start Tue Mar 31 2020 22:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53005 * 109.46867 * 294.99684 * 3 2 1 6 6 C 1.50700 * 109.46738 * 175.00110 * 3 2 1 7 7 C 1.38230 * 120.00271 * 59.72403 * 6 3 2 8 8 C 1.38235 * 120.00002 * 179.80644 * 7 6 3 9 9 C 1.38233 * 120.00321 * 0.40184 * 8 7 6 10 10 S 1.76202 * 120.00462 * 179.83417 * 9 8 7 11 11 O 1.42097 * 106.40187 * 23.55941 * 10 9 8 12 12 O 1.42096 * 106.40108 * 156.48126 * 10 9 8 13 13 N 1.65602 * 107.21520 * 270.01970 * 10 9 8 14 14 C 1.47067 * 136.05578 * 269.62643 * 13 10 9 15 15 C 1.53243 * 88.08238 * 207.20459 * 14 13 10 16 16 O 1.42894 * 114.19411 * 87.72829 * 15 14 13 17 17 C 1.50693 * 114.32603 * 220.47252 * 15 14 13 18 18 H 1.07998 * 120.00304 * 93.76029 * 17 15 14 19 19 C 1.37882 * 119.99998 * 273.75660 * 17 15 14 20 20 N 1.31513 * 119.99781 * 0.02562 * 19 17 15 21 21 Si 1.86794 * 120.00114 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47161 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47258 * 120.00366 * 21 19 17 24 24 H 1.48506 * 109.47419 * 240.00143 * 21 19 17 25 25 C 1.47068 * 136.05744 * 90.00198 * 13 10 9 26 26 C 1.38242 * 119.99814 * 359.84998 * 9 8 7 27 27 C 1.38233 * 119.99955 * 239.99484 * 6 3 2 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09004 * 109.46908 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.47443 * 300.00098 * 5 3 2 35 35 H 1.09001 * 109.47099 * 60.00379 * 5 3 2 36 36 H 1.07999 * 120.00039 * 0.02562 * 7 6 3 37 37 H 1.08005 * 120.00020 * 180.23326 * 8 7 6 38 38 H 1.08997 * 113.46865 * 321.93549 * 14 13 10 39 39 H 1.08999 * 113.46625 * 92.38231 * 14 13 10 40 40 H 0.96701 * 114.00206 * 86.30458 * 16 15 14 41 41 H 0.97003 * 119.99948 * 179.97438 * 20 19 17 42 42 H 1.09005 * 113.46527 * 267.62102 * 25 13 10 43 43 H 1.09000 * 113.46748 * 38.00145 * 25 13 10 44 44 H 1.07992 * 120.00016 * 179.97438 * 26 9 8 45 45 H 1.08004 * 119.99720 * 359.97438 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4442 0.1238 7 6 4.3149 0.8117 -0.8318 8 6 5.6927 0.8168 -0.7203 9 6 6.2972 1.4472 0.3512 10 16 8.0533 1.4498 0.4956 11 8 8.5641 1.2570 -0.8162 12 8 8.3878 2.5703 1.3030 13 7 8.4757 0.1047 1.3644 14 6 8.6802 -0.2174 2.7847 15 6 9.6527 -1.3160 2.3424 16 8 11.0007 -0.8723 2.1752 17 6 9.5404 -2.5974 3.1274 18 1 8.9110 -3.3979 2.7674 19 6 10.2411 -2.7480 4.3053 20 7 11.0072 -1.7731 4.7438 21 14 10.1025 -4.3366 5.2780 22 1 9.1845 -5.2688 4.5753 23 1 11.4441 -4.9615 5.3994 24 1 9.5689 -4.0429 6.6324 25 6 8.8178 -1.2916 1.0545 26 6 5.5240 2.0753 1.3096 27 6 4.1463 2.0735 1.1960 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9989 3.1541 -1.3076 34 1 2.0698 1.5874 -2.1492 35 1 0.5489 2.1252 -1.3970 36 1 3.8426 0.3166 -1.6673 37 1 6.2969 0.3258 -1.4689 38 1 9.1595 0.5839 3.3469 39 1 7.7860 -0.6013 3.2758 40 1 11.5239 -0.8888 2.9882 41 1 11.4999 -1.8789 5.5727 42 1 7.9606 -1.9645 1.0802 43 1 9.4130 -1.4019 0.1481 44 1 5.9961 2.5674 2.1469 45 1 3.5421 2.5643 1.9447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189066703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:36 Heat of formation + Delta-G solvation = -95.096298 kcal Electronic energy + Delta-G solvation = -27516.323604 eV Core-core repulsion = 23625.750253 eV Total energy + Delta-G solvation = -3890.573351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.71253 -40.38699 -38.37581 -37.17500 -36.99412 -35.84381 -34.07398 -32.34656 -32.09644 -29.79049 -29.63469 -26.78785 -26.52030 -25.93707 -24.12827 -23.44117 -21.49498 -20.87401 -20.04878 -19.37712 -18.86910 -18.19028 -17.36726 -17.03861 -16.76267 -16.26457 -16.02624 -15.75869 -15.49584 -15.39631 -15.02050 -14.80640 -14.75107 -14.56963 -14.09660 -14.01875 -13.86007 -13.41034 -13.35510 -13.30424 -13.28935 -13.25150 -12.93072 -12.80380 -12.64672 -12.54027 -12.30981 -12.20156 -12.17523 -12.09688 -11.72506 -11.61795 -11.38186 -11.09488 -10.64403 -10.30380 -10.18558 -10.09301 -9.79423 -8.22611 -6.39937 -0.75181 -0.25162 0.25598 1.48114 1.52343 1.62999 1.87815 2.42674 2.45455 2.77435 2.96737 3.09108 3.53898 3.64427 3.70664 3.87660 3.98992 4.12343 4.26451 4.28627 4.32954 4.38834 4.39616 4.56557 4.64098 4.68114 4.70435 4.72064 4.75811 4.89916 4.98345 4.99240 5.01983 5.07461 5.12772 5.13829 5.17403 5.23989 5.24607 5.31173 5.51660 5.54569 5.71411 5.81005 5.81729 6.00044 6.68011 7.33420 7.54252 8.83667 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003177 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.326385 B = 8810.667820 C =10176.717285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.056 4.056 4 H 0.092 0.908 5 C -0.146 4.146 6 C -0.020 4.020 7 C -0.135 4.135 8 C -0.031 4.031 9 C -0.687 4.687 10 S 2.718 3.282 11 O -0.987 6.987 12 O -0.992 6.992 13 N -1.037 6.037 14 C 0.108 3.892 15 C 0.214 3.786 16 O -0.589 6.589 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.026 3.974 20 N -0.922 5.922 21 Si 0.973 3.027 22 H -0.262 1.262 23 H -0.284 1.284 24 H -0.280 1.280 25 C 0.136 3.864 26 C -0.033 4.033 27 C -0.141 4.141 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.156 0.844 37 H 0.141 0.859 38 H 0.048 0.952 39 H 0.094 0.906 40 H 0.388 0.612 41 H 0.275 0.725 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.136 0.864 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.730 3.502 -7.723 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.074 4.074 4 H 0.110 0.890 5 C -0.203 4.203 6 C -0.021 4.021 7 C -0.154 4.154 8 C -0.050 4.050 9 C -0.777 4.777 10 S 2.815 3.185 11 O -0.978 6.978 12 O -0.983 6.983 13 N -0.876 5.876 14 C -0.017 4.017 15 C 0.171 3.829 16 O -0.401 6.401 17 C -0.585 4.585 18 H 0.099 0.901 19 C -0.174 4.174 20 N -0.564 5.564 21 Si 0.798 3.202 22 H -0.186 1.186 23 H -0.210 1.210 24 H -0.205 1.205 25 C 0.011 3.989 26 C -0.052 4.052 27 C -0.159 4.159 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.174 0.826 37 H 0.159 0.841 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.243 0.757 41 H 0.085 0.915 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.154 0.846 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.278 4.480 -8.680 23.413 hybrid contribution 0.165 -0.618 1.380 1.521 sum -21.114 3.861 -7.300 22.671 Atomic orbital electron populations 1.21810 0.94357 1.02170 1.02513 1.21594 0.96936 0.94597 1.02345 1.20385 0.88235 0.98072 1.00699 0.88955 1.21916 1.02592 1.00156 0.95619 1.20585 0.97209 0.91877 0.92393 1.21381 0.92450 1.00885 1.00648 1.21105 0.96548 0.93127 0.94239 1.30746 1.25615 1.15052 1.06319 1.00704 0.74542 0.71455 0.71760 1.93484 1.79586 1.86048 1.38671 1.93485 1.84174 1.50107 1.70505 1.59810 1.83225 1.24525 1.20013 1.23480 1.00206 0.98206 0.79846 1.19938 0.80092 0.90897 0.91974 1.86014 1.24481 1.88911 1.40735 1.21795 1.28803 1.01247 1.06617 0.90078 1.25858 0.93779 0.99900 0.97878 1.69370 1.29941 1.33655 1.23388 0.85274 0.77900 0.78974 0.78028 1.18592 1.21001 1.20550 1.22910 0.97862 0.79037 0.99089 1.21082 0.95171 0.93195 0.95769 1.21496 0.93724 1.01225 0.99475 0.92423 0.92411 0.91523 0.91329 0.92618 0.92904 0.92080 0.90237 0.82597 0.84074 0.93387 0.88841 0.75663 0.91521 0.87078 0.91395 0.84642 0.82604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.67 71.98 0.70 -0.69 16 2 C -0.12 -1.40 5.14 30.59 0.16 -1.24 16 3 C -0.06 -0.70 2.56 -11.54 -0.03 -0.73 16 4 H 0.09 1.01 7.88 -2.39 -0.02 0.99 16 5 C -0.15 -1.55 8.76 71.98 0.63 -0.92 16 6 C -0.02 -0.38 4.78 -19.87 -0.09 -0.48 16 7 C -0.14 -2.77 8.76 22.27 0.20 -2.57 16 8 C -0.03 -0.82 9.52 22.27 0.21 -0.61 16 9 C -0.69 -21.37 5.97 22.27 0.13 -21.24 16 10 S 2.72 106.32 6.27 -56.49 -0.35 105.97 16 11 O -0.99 -42.16 17.28 -128.00 -2.21 -44.37 16 12 O -0.99 -43.89 17.28 -128.00 -2.21 -46.10 16 13 N -1.04 -42.77 4.24 -550.82 -2.33 -45.11 16 14 C 0.11 4.83 8.14 83.10 0.68 5.51 16 15 C 0.21 10.42 1.57 -11.29 -0.02 10.40 16 16 O -0.59 -31.83 13.54 -148.98 -2.02 -33.85 16 17 C -0.55 -26.91 8.69 25.60 0.22 -26.69 16 18 H 0.08 3.76 7.81 -2.91 -0.02 3.74 16 19 C 0.03 1.27 5.39 84.66 0.46 1.72 16 20 N -0.92 -47.84 11.01 21.45 0.24 -47.61 16 21 Si 0.97 39.25 29.54 68.60 2.03 41.27 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 25 C 0.14 5.57 8.15 83.18 0.68 6.25 16 26 C -0.03 -0.91 9.52 22.27 0.21 -0.70 16 27 C -0.14 -3.00 9.67 22.27 0.22 -2.78 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.50 6.56 -2.39 -0.02 0.48 16 31 H 0.07 0.79 7.56 -2.39 -0.02 0.77 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.06 0.64 7.40 -2.39 -0.02 0.62 16 35 H 0.08 0.61 6.57 -2.39 -0.02 0.60 16 36 H 0.16 2.28 7.16 -2.91 -0.02 2.26 16 37 H 0.14 3.58 7.62 -2.91 -0.02 3.55 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 3.77 8.10 -2.39 -0.02 3.75 16 40 H 0.39 21.41 6.33 -74.06 -0.47 20.94 16 41 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 42 H 0.11 3.84 8.10 -2.38 -0.02 3.82 16 43 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.14 3.74 7.62 -2.91 -0.02 3.72 16 45 H 0.16 2.40 7.95 -2.91 -0.02 2.38 16 Total: -1.00 -65.48 380.60 -1.99 -67.47 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: 0.53 Total: 37.08 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 4.34 Total: -34.76 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -2.10 Total: -92.71 kcal Atomic # 8 Polarization: -117.88 SS G_CDS: -6.44 Total: -124.32 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.27 kcal Atomic # 16 Polarization: 106.32 SS G_CDS: -0.35 Total: 105.97 kcal Total: -65.48 -1.99 -67.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189066703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.622 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds