Wall clock time and date at job start Tue Mar 31 2020 23:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47240 * 2 1 4 4 C 1.50702 * 109.46863 * 119.99952 * 2 1 3 5 5 C 1.38232 * 119.99689 * 59.72483 * 4 2 1 6 6 C 1.38239 * 119.99690 * 179.80992 * 5 4 2 7 7 C 1.38243 * 119.99914 * 0.39880 * 6 5 4 8 8 C 1.38230 * 120.00096 * 359.85448 * 7 6 5 9 9 C 1.38231 * 120.00090 * 240.00251 * 4 2 1 10 10 S 1.81398 * 109.47055 * 240.00001 * 2 1 3 11 11 O 1.42105 * 108.57879 * 305.51255 * 10 2 1 12 12 O 1.42097 * 108.57629 * 174.49016 * 10 2 1 13 13 C 1.81391 * 101.92304 * 60.00174 * 10 2 1 14 14 C 1.53001 * 109.47348 * 179.97438 * 13 10 2 15 15 C 1.50698 * 109.47176 * 179.97438 * 14 13 10 16 16 O 1.21282 * 120.00413 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00078 * 179.97438 * 15 14 13 18 18 C 1.46510 * 119.99704 * 0.02562 * 17 15 14 19 19 C 1.46496 * 120.00320 * 180.02562 * 17 15 14 20 20 C 1.50702 * 109.47429 * 90.00063 * 19 17 15 21 21 H 1.07991 * 119.99559 * 359.97438 * 20 19 17 22 22 C 1.37873 * 119.99991 * 180.02562 * 20 19 17 23 23 N 1.31520 * 120.00314 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99813 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47325 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47351 * 119.99568 * 24 22 20 27 27 H 1.48498 * 109.47016 * 239.99577 * 24 22 20 28 28 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47067 * 300.00382 * 1 2 3 30 30 H 1.09004 * 109.47046 * 59.99809 * 1 2 3 31 31 H 1.07992 * 120.00508 * 359.97438 * 5 4 2 32 32 H 1.08000 * 120.00207 * 180.23457 * 6 5 4 33 33 H 1.08000 * 119.99545 * 179.83693 * 7 6 5 34 34 H 1.07999 * 120.00465 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00006 * 359.97438 * 9 4 2 36 36 H 1.09003 * 109.47583 * 300.00163 * 13 10 2 37 37 H 1.09003 * 109.47643 * 59.99714 * 13 10 2 38 38 H 1.08998 * 109.46690 * 299.99953 * 14 13 10 39 39 H 1.09002 * 109.47143 * 60.00103 * 14 13 10 40 40 H 1.08998 * 109.46798 * 90.00241 * 18 17 15 41 41 H 1.09002 * 109.46856 * 209.99929 * 18 17 15 42 42 H 1.08998 * 109.47026 * 329.99804 * 18 17 15 43 43 H 1.09006 * 109.47120 * 210.00042 * 19 17 15 44 44 H 1.08997 * 109.47018 * 329.99647 * 19 17 15 45 45 H 0.96997 * 120.00335 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6936 -2.0322 1.4521 6 6 2.1576 -2.6850 2.5788 7 6 2.9535 -2.0136 3.4881 8 6 3.2879 -0.6903 3.2692 9 6 2.8270 -0.0386 2.1405 10 16 2.1347 -0.8551 -1.4811 11 8 1.5479 -2.1485 -1.5284 12 8 3.5496 -0.7331 -1.5284 13 6 1.4230 0.1514 -2.8118 14 6 1.8343 -0.4292 -4.1663 15 6 1.2425 0.4067 -5.2717 16 8 0.5587 1.3716 -5.0028 17 7 1.4732 0.0822 -6.5593 18 6 2.2989 -1.0837 -6.8842 19 6 0.8984 0.8950 -7.6340 20 6 1.8609 1.9948 -8.0018 21 1 2.8059 2.0799 -7.4863 22 6 1.5343 2.8928 -8.9957 23 7 0.3831 2.7894 -9.6232 24 14 2.7277 4.2555 -9.4520 25 1 3.9429 4.1537 -8.6046 26 1 3.1079 4.1225 -10.8814 27 1 2.0807 5.5740 -9.2326 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.0688 -2.5556 0.7437 32 1 1.8961 -3.7188 2.7501 33 1 3.3138 -2.5229 4.3697 34 1 3.9093 -0.1656 3.9797 35 1 3.0882 0.9952 1.9694 36 1 0.3361 0.1471 -2.7291 37 1 1.7894 1.1747 -2.7291 38 1 2.9212 -0.4243 -4.2486 39 1 1.4682 -1.4525 -4.2492 40 1 1.6648 -1.9666 -6.9654 41 1 2.8093 -0.9145 -7.8323 42 1 3.0366 -1.2372 -6.0967 43 1 0.7140 0.2670 -8.5057 44 1 -0.0411 1.3323 -7.2960 45 1 0.1535 3.4210 -10.3227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190889155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:06 Heat of formation + Delta-G solvation = -83.605381 kcal Electronic energy + Delta-G solvation = -26937.735890 eV Core-core repulsion = 23047.660823 eV Total energy + Delta-G solvation = -3890.075067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.75807 -39.11398 -37.15863 -36.17246 -34.97829 -34.85082 -33.20800 -32.46835 -31.27931 -29.88007 -28.02647 -26.09537 -24.89385 -24.77171 -22.97544 -22.43368 -21.55906 -18.97051 -18.59638 -17.38420 -17.29833 -16.63343 -16.58678 -16.22853 -15.80620 -15.46359 -15.30625 -15.11100 -14.99862 -14.32285 -14.21448 -13.73902 -13.70718 -13.43494 -13.32870 -12.82572 -12.66169 -12.45478 -12.33241 -12.29343 -12.18040 -12.14916 -12.07691 -11.87672 -11.61815 -11.42653 -11.32998 -11.22794 -11.03059 -10.88024 -10.63428 -10.51784 -10.19299 -9.65046 -9.28599 -9.12343 -9.01346 -8.47254 -7.71657 -6.07920 -4.12841 -0.30614 0.96755 1.03865 2.52174 3.27381 3.27733 3.30028 3.35498 3.39936 3.40786 3.78959 3.88434 4.02995 4.29694 4.41654 4.47379 4.57555 4.65786 4.73260 4.79560 4.83952 5.01782 5.09619 5.14771 5.20997 5.26452 5.33530 5.38689 5.49484 5.57881 5.67277 5.68915 5.70070 5.80264 5.91360 6.06844 6.12821 6.15944 6.19619 6.60126 6.99357 7.38521 7.47389 7.88262 8.18951 8.32571 8.84191 8.99828 9.52392 11.00207 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024679 B = 0.002297 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.316042 B =12187.465580 C =12484.743008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.531 4.531 3 H 0.145 0.855 4 C -0.079 4.079 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.120 4.120 9 C -0.099 4.099 10 S 2.412 3.588 11 O -0.931 6.931 12 O -0.932 6.932 13 C -0.590 4.590 14 C -0.134 4.134 15 C 0.512 3.488 16 O -0.540 6.540 17 N -0.600 5.600 18 C 0.077 3.923 19 C 0.244 3.756 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.045 0.955 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -10.469 24.367 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.639 4.639 3 H 0.163 0.837 4 C -0.081 4.081 5 C -0.139 4.139 6 C -0.132 4.132 7 C -0.133 4.133 8 C -0.138 4.138 9 C -0.118 4.118 10 S 2.595 3.405 11 O -0.929 6.929 12 O -0.930 6.930 13 C -0.720 4.720 14 C -0.175 4.175 15 C 0.297 3.703 16 O -0.417 6.417 17 N -0.332 5.332 18 C -0.067 4.067 19 C 0.125 3.875 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.533 5.533 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.950 -10.623 24.261 26.649 hybrid contribution 0.254 1.595 -0.300 1.643 sum 3.205 -9.028 23.961 25.805 Atomic orbital electron populations 1.21767 0.88795 1.04555 1.04886 1.29157 1.07143 1.13060 1.14493 0.83730 1.18963 0.99699 0.94238 0.95165 1.21449 0.99952 0.93943 0.98599 1.21179 0.97730 1.00180 0.94156 1.21277 0.97892 0.94808 0.99344 1.21181 1.00014 0.95056 0.97529 1.21107 0.96697 1.00105 0.93899 1.08509 0.76359 0.77499 0.78089 1.93550 1.79256 1.34522 1.85526 1.93584 1.26979 1.86877 1.85512 1.30116 1.14436 1.15593 1.11810 1.21427 1.03302 1.01081 0.91728 1.19883 0.81736 0.85215 0.83470 1.90658 1.39751 1.28406 1.82925 1.48158 1.49888 1.28609 1.06565 1.21733 0.94632 0.88039 1.02264 1.19340 0.95024 0.89686 0.83489 1.21467 1.03622 1.12622 1.18857 0.92351 1.24950 0.95484 0.97714 0.96048 1.69942 1.21580 1.37289 1.24535 0.86428 0.81010 0.81818 0.78079 1.19774 1.20915 1.20873 0.90224 0.90064 0.90221 0.84059 0.85373 0.85702 0.85553 0.85470 0.83973 0.84055 0.87823 0.87875 0.93331 0.90421 0.92269 0.94791 0.93729 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.75 37.16 0.33 -0.71 16 2 C -0.53 -4.59 2.94 -27.88 -0.08 -4.67 16 3 H 0.14 0.91 7.88 -51.93 -0.41 0.50 16 4 C -0.08 -0.78 4.78 -104.63 -0.50 -1.28 16 5 C -0.12 -1.20 8.57 -39.58 -0.34 -1.54 16 6 C -0.11 -0.97 10.05 -39.58 -0.40 -1.37 16 7 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 8 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 9 C -0.10 -0.88 9.67 -39.58 -0.38 -1.27 16 10 S 2.41 27.40 4.08 -107.50 -0.44 26.96 16 11 O -0.93 -12.15 16.22 -57.83 -0.94 -13.08 16 12 O -0.93 -13.61 18.10 -57.83 -1.05 -14.66 16 13 C -0.59 -7.05 4.64 37.16 0.17 -6.88 16 14 C -0.13 -1.94 4.26 -27.88 -0.12 -2.06 16 15 C 0.51 10.35 7.67 -10.99 -0.08 10.27 16 16 O -0.54 -12.91 15.56 5.56 0.09 -12.83 16 17 N -0.60 -12.64 2.86 -182.95 -0.52 -13.16 16 18 C 0.08 1.22 10.24 59.85 0.61 1.83 16 19 C 0.24 6.33 5.16 -5.19 -0.03 6.30 16 20 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 21 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 24 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H 0.08 0.56 7.29 -51.93 -0.38 0.19 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.49 6.56 -51.93 -0.34 0.15 16 31 H 0.14 1.36 6.28 -52.49 -0.33 1.03 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.89 7.95 -52.49 -0.42 0.47 16 36 H 0.14 1.50 6.83 -51.92 -0.35 1.15 16 37 H 0.14 1.59 8.10 -51.92 -0.42 1.17 16 38 H 0.10 1.35 7.40 -51.93 -0.38 0.97 16 39 H 0.10 1.25 8.11 -51.93 -0.42 0.83 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 42 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 43 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 44 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -37.77 385.60 -10.04 -47.81 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.67 Total: -0.35 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -2.04 Total: -17.56 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.21 Total: -38.86 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -1.90 Total: -40.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 27.40 SS G_CDS: -0.44 Total: 26.96 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.77 -10.04 -47.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190889155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.793 kcal (2) G-P(sol) polarization free energy of solvation -37.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds