Wall clock time and date at job start Tue Mar 31 2020 23:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47240 * 2 1 4 4 C 1.50702 * 109.46863 * 119.99952 * 2 1 3 5 5 C 1.38232 * 119.99689 * 59.72483 * 4 2 1 6 6 C 1.38239 * 119.99690 * 179.80992 * 5 4 2 7 7 C 1.38243 * 119.99914 * 0.39880 * 6 5 4 8 8 C 1.38230 * 120.00096 * 359.85448 * 7 6 5 9 9 C 1.38231 * 120.00090 * 240.00251 * 4 2 1 10 10 S 1.81398 * 109.47055 * 240.00001 * 2 1 3 11 11 O 1.42105 * 108.57879 * 305.51255 * 10 2 1 12 12 O 1.42097 * 108.57629 * 174.49016 * 10 2 1 13 13 C 1.81391 * 101.92304 * 60.00174 * 10 2 1 14 14 C 1.53001 * 109.47348 * 179.97438 * 13 10 2 15 15 C 1.50698 * 109.47176 * 179.97438 * 14 13 10 16 16 O 1.21282 * 120.00413 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00078 * 179.97438 * 15 14 13 18 18 C 1.46510 * 119.99704 * 0.02562 * 17 15 14 19 19 C 1.46496 * 120.00320 * 180.02562 * 17 15 14 20 20 C 1.50702 * 109.47429 * 90.00063 * 19 17 15 21 21 H 1.07991 * 119.99559 * 359.97438 * 20 19 17 22 22 C 1.37873 * 119.99991 * 180.02562 * 20 19 17 23 23 N 1.31520 * 120.00314 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99813 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47325 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47351 * 119.99568 * 24 22 20 27 27 H 1.48498 * 109.47016 * 239.99577 * 24 22 20 28 28 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47067 * 300.00382 * 1 2 3 30 30 H 1.09004 * 109.47046 * 59.99809 * 1 2 3 31 31 H 1.07992 * 120.00508 * 359.97438 * 5 4 2 32 32 H 1.08000 * 120.00207 * 180.23457 * 6 5 4 33 33 H 1.08000 * 119.99545 * 179.83693 * 7 6 5 34 34 H 1.07999 * 120.00465 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00006 * 359.97438 * 9 4 2 36 36 H 1.09003 * 109.47583 * 300.00163 * 13 10 2 37 37 H 1.09003 * 109.47643 * 59.99714 * 13 10 2 38 38 H 1.08998 * 109.46690 * 299.99953 * 14 13 10 39 39 H 1.09002 * 109.47143 * 60.00103 * 14 13 10 40 40 H 1.08998 * 109.46798 * 90.00241 * 18 17 15 41 41 H 1.09002 * 109.46856 * 209.99929 * 18 17 15 42 42 H 1.08998 * 109.47026 * 329.99804 * 18 17 15 43 43 H 1.09006 * 109.47120 * 210.00042 * 19 17 15 44 44 H 1.08997 * 109.47018 * 329.99647 * 19 17 15 45 45 H 0.96997 * 120.00335 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6936 -2.0322 1.4521 6 6 2.1576 -2.6850 2.5788 7 6 2.9535 -2.0136 3.4881 8 6 3.2879 -0.6903 3.2692 9 6 2.8270 -0.0386 2.1405 10 16 2.1347 -0.8551 -1.4811 11 8 1.5479 -2.1485 -1.5284 12 8 3.5496 -0.7331 -1.5284 13 6 1.4230 0.1514 -2.8118 14 6 1.8343 -0.4292 -4.1663 15 6 1.2425 0.4067 -5.2717 16 8 0.5587 1.3716 -5.0028 17 7 1.4732 0.0822 -6.5593 18 6 2.2989 -1.0837 -6.8842 19 6 0.8984 0.8950 -7.6340 20 6 1.8609 1.9948 -8.0018 21 1 2.8059 2.0799 -7.4863 22 6 1.5343 2.8928 -8.9957 23 7 0.3831 2.7894 -9.6232 24 14 2.7277 4.2555 -9.4520 25 1 3.9429 4.1537 -8.6046 26 1 3.1079 4.1225 -10.8814 27 1 2.0807 5.5740 -9.2326 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.0688 -2.5556 0.7437 32 1 1.8961 -3.7188 2.7501 33 1 3.3138 -2.5229 4.3697 34 1 3.9093 -0.1656 3.9797 35 1 3.0882 0.9952 1.9694 36 1 0.3361 0.1471 -2.7291 37 1 1.7894 1.1747 -2.7291 38 1 2.9212 -0.4243 -4.2486 39 1 1.4682 -1.4525 -4.2492 40 1 1.6648 -1.9666 -6.9654 41 1 2.8093 -0.9145 -7.8323 42 1 3.0366 -1.2372 -6.0967 43 1 0.7140 0.2670 -8.5057 44 1 -0.0411 1.3323 -7.2960 45 1 0.1535 3.4210 -10.3227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190889155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:05 Heat of formation + Delta-G solvation = -109.265981 kcal Electronic energy + Delta-G solvation = -26938.848617 eV Core-core repulsion = 23047.660823 eV Total energy + Delta-G solvation = -3891.187794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.71889 -40.36302 -38.12655 -37.14649 -36.68158 -35.51051 -34.85409 -34.09505 -31.87749 -30.54809 -29.88301 -27.48589 -26.42529 -25.43311 -24.16405 -23.57816 -22.28329 -20.11688 -19.84351 -18.73572 -18.41812 -18.06244 -17.60605 -17.25019 -17.05508 -16.67784 -16.60367 -16.15963 -16.11027 -15.67602 -15.10974 -14.79374 -14.43629 -14.32078 -14.16767 -14.03970 -13.98650 -13.76505 -13.60763 -13.47575 -13.23912 -13.18598 -13.11544 -13.02905 -12.85762 -12.77575 -12.55211 -12.42587 -12.23549 -12.21181 -12.01356 -11.89459 -11.69176 -11.33412 -10.69020 -10.66254 -9.90632 -9.72771 -9.46503 -8.24171 -6.38980 -1.18417 0.33797 0.42121 1.36183 1.37888 1.50054 1.67237 1.74305 2.22506 2.38712 2.58848 2.77369 2.98158 3.05448 3.30189 3.37637 3.59852 3.73757 3.82379 3.99951 4.11092 4.20359 4.23913 4.27573 4.43182 4.51250 4.53422 4.57973 4.63857 4.70486 4.76398 4.84063 4.93929 4.99878 5.01433 5.10195 5.18003 5.21092 5.46654 5.50574 5.53473 5.56248 5.80121 6.01965 6.03826 6.65991 6.73653 7.24747 7.40602 8.83125 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024679 B = 0.002297 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.316042 B =12187.465580 C =12484.743008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.512 4.512 3 H 0.170 0.830 4 C -0.100 4.100 5 C -0.142 4.142 6 C -0.126 4.126 7 C -0.118 4.118 8 C -0.126 4.126 9 C -0.113 4.113 10 S 2.424 3.576 11 O -0.952 6.952 12 O -0.968 6.968 13 C -0.596 4.596 14 C -0.132 4.132 15 C 0.503 3.497 16 O -0.587 6.587 17 N -0.611 5.611 18 C 0.070 3.930 19 C 0.257 3.743 20 C -0.543 4.543 21 H 0.053 0.947 22 C 0.007 3.993 23 N -0.928 5.928 24 Si 0.969 3.031 25 H -0.267 1.267 26 H -0.270 1.270 27 H -0.280 1.280 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.025 0.975 44 H 0.002 0.998 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 -10.572 26.234 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.623 4.623 3 H 0.188 0.812 4 C -0.101 4.101 5 C -0.161 4.161 6 C -0.144 4.144 7 C -0.136 4.136 8 C -0.144 4.144 9 C -0.132 4.132 10 S 2.610 3.390 11 O -0.950 6.950 12 O -0.965 6.965 13 C -0.725 4.725 14 C -0.172 4.172 15 C 0.290 3.710 16 O -0.468 6.468 17 N -0.342 5.342 18 C -0.072 4.072 19 C 0.135 3.865 20 C -0.582 4.582 21 H 0.072 0.928 22 C -0.192 4.192 23 N -0.567 5.567 24 Si 0.793 3.207 25 H -0.192 1.192 26 H -0.195 1.195 27 H -0.206 1.206 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.171 0.829 37 H 0.164 0.836 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.043 0.957 44 H 0.020 0.980 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.417 -10.786 26.091 28.576 hybrid contribution -0.235 1.575 -0.772 1.770 sum 4.183 -9.211 25.319 27.265 Atomic orbital electron populations 1.21891 0.87735 1.04964 1.06044 1.28987 1.07964 1.13643 1.11672 0.81220 1.19152 1.00627 0.94536 0.95796 1.21601 1.00722 0.94437 0.99351 1.21493 0.97779 1.01174 0.93955 1.21646 0.97121 0.94953 0.99850 1.21561 0.99834 0.95352 0.97620 1.21436 0.96488 1.01117 0.94162 1.08071 0.75321 0.77091 0.78482 1.93516 1.79268 1.36081 1.86093 1.93534 1.29284 1.87353 1.86329 1.30195 1.15425 1.16025 1.10826 1.21482 1.03986 1.01287 0.90494 1.20854 0.80897 0.85114 0.84119 1.90621 1.41796 1.30673 1.83697 1.48198 1.50430 1.29506 1.06083 1.22043 0.95222 0.86817 1.03169 1.18817 0.93315 0.89809 0.84523 1.21727 1.03726 1.13633 1.19067 0.92839 1.25871 0.97268 1.00188 0.95920 1.70055 1.23285 1.38364 1.25046 0.85353 0.78689 0.78325 0.78346 1.19158 1.19471 1.20620 0.90313 0.88765 0.89171 0.84597 0.83737 0.83195 0.83201 0.83840 0.82859 0.83569 0.86133 0.85270 0.90642 0.91122 0.88917 0.95673 0.97961 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.75 71.98 0.63 -1.29 16 2 C -0.51 -8.01 2.94 29.85 0.09 -7.92 16 3 H 0.17 1.75 7.88 -2.39 -0.02 1.73 16 4 C -0.10 -1.81 4.78 -19.87 -0.09 -1.91 16 5 C -0.14 -2.70 8.57 22.27 0.19 -2.51 16 6 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 7 C -0.12 -1.54 10.05 22.27 0.22 -1.31 16 8 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 9 C -0.11 -1.79 9.67 22.27 0.22 -1.57 16 10 S 2.42 52.40 4.08 -56.49 -0.23 52.17 16 11 O -0.95 -24.12 16.22 -127.37 -2.07 -26.19 16 12 O -0.97 -27.42 18.10 -127.37 -2.30 -29.73 16 13 C -0.60 -13.60 4.64 71.98 0.33 -13.26 16 14 C -0.13 -3.64 4.26 29.85 0.13 -3.52 16 15 C 0.50 20.40 7.67 87.66 0.67 21.07 16 16 O -0.59 -28.87 15.56 -3.04 -0.05 -28.91 16 17 N -0.61 -25.94 2.86 -851.11 -2.43 -28.37 16 18 C 0.07 2.10 10.24 127.77 1.31 3.41 16 19 C 0.26 13.84 5.16 85.63 0.44 14.28 16 20 C -0.54 -31.29 9.39 25.60 0.24 -31.05 16 21 H 0.05 3.06 7.81 -2.92 -0.02 3.03 16 22 C 0.01 0.37 5.46 84.65 0.46 0.84 16 23 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 24 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 28 H 0.08 1.04 7.29 -2.39 -0.02 1.02 16 29 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.09 0.97 6.56 -2.39 -0.02 0.95 16 31 H 0.14 2.59 6.28 -2.91 -0.02 2.58 16 32 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.14 1.66 7.95 -2.91 -0.02 1.63 16 36 H 0.15 3.10 6.83 -2.39 -0.02 3.08 16 37 H 0.15 3.17 8.10 -2.39 -0.02 3.15 16 38 H 0.12 2.92 7.40 -2.39 -0.02 2.90 16 39 H 0.13 2.87 8.11 -2.39 -0.02 2.85 16 40 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 42 H 0.09 2.16 6.44 -2.39 -0.02 2.14 16 43 H 0.03 1.37 8.07 -2.38 -0.02 1.36 16 44 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 45 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -84.08 385.60 1.50 -82.58 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.98 Total: 15.20 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 5.29 Total: -27.95 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -2.15 Total: -84.01 kcal Atomic # 8 Polarization: -80.41 SS G_CDS: -4.42 Total: -84.83 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 52.40 SS G_CDS: -0.23 Total: 52.17 kcal Total: -84.08 1.50 -82.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190889155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.682 kcal (2) G-P(sol) polarization free energy of solvation -84.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds