Wall clock time and date at job start Tue Mar 31 2020 23:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47101 * 2 1 4 4 C 1.50702 * 109.47354 * 240.00117 * 2 1 3 5 5 C 1.38234 * 120.00272 * 119.99697 * 4 2 1 6 6 C 1.38230 * 119.99880 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 9 9 C 1.38234 * 119.99464 * 300.02413 * 4 2 1 10 10 S 1.81396 * 109.47208 * 119.99835 * 2 1 3 11 11 O 1.42104 * 108.57682 * 59.48603 * 10 2 1 12 12 O 1.42101 * 108.58180 * 190.51237 * 10 2 1 13 13 C 1.81404 * 101.92227 * 305.00111 * 10 2 1 14 14 C 1.52999 * 109.46816 * 179.97438 * 13 10 2 15 15 C 1.50706 * 109.47011 * 179.97438 * 14 13 10 16 16 O 1.21278 * 119.99600 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99963 * 179.97438 * 15 14 13 18 18 C 1.46495 * 120.00243 * 0.02562 * 17 15 14 19 19 C 1.46510 * 119.99777 * 180.02562 * 17 15 14 20 20 C 1.50703 * 109.46900 * 90.00198 * 19 17 15 21 21 H 1.07993 * 120.00154 * 359.97438 * 20 19 17 22 22 C 1.37874 * 119.99547 * 180.02562 * 20 19 17 23 23 N 1.31518 * 120.00487 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47249 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47186 * 119.99555 * 24 22 20 27 27 H 1.48501 * 109.47176 * 239.99739 * 24 22 20 28 28 H 1.09006 * 109.46956 * 60.00098 * 1 2 3 29 29 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46951 * 300.00128 * 1 2 3 31 31 H 1.08001 * 119.99769 * 0.02562 * 5 4 2 32 32 H 1.08000 * 120.00376 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.00616 * 179.72578 * 7 6 5 34 34 H 1.08001 * 120.00299 * 179.97438 * 8 7 6 35 35 H 1.07997 * 120.00481 * 359.97438 * 9 4 2 36 36 H 1.08999 * 109.46780 * 299.99422 * 13 10 2 37 37 H 1.08993 * 109.47242 * 59.99820 * 13 10 2 38 38 H 1.09000 * 109.47577 * 299.99768 * 14 13 10 39 39 H 1.09005 * 109.47278 * 60.00426 * 14 13 10 40 40 H 1.09004 * 109.46608 * 90.00432 * 18 17 15 41 41 H 1.09004 * 109.46940 * 209.99800 * 18 17 15 42 42 H 1.08996 * 109.47287 * 330.00469 * 18 17 15 43 43 H 1.08989 * 109.46875 * 210.00059 * 19 17 15 44 44 H 1.08996 * 109.46957 * 330.00295 * 19 17 15 45 45 H 0.96992 * 119.99833 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.8271 -0.0386 -2.1404 6 6 3.2883 -0.6904 -3.2688 7 6 2.9553 -2.0142 -3.4870 8 6 2.1615 -2.6863 -2.5765 9 6 1.6980 -2.0337 -1.4494 10 16 2.1347 -0.8551 1.4811 11 8 1.6408 -2.1874 1.4680 12 8 3.5342 -0.6350 1.5914 13 6 1.2997 0.0577 2.8079 14 6 1.6962 -0.5343 4.1619 15 6 1.0031 0.2244 5.2642 16 8 0.2644 1.1474 4.9934 17 7 1.2033 -0.1234 6.5508 18 6 2.0951 -1.2387 6.8778 19 6 0.5290 0.6138 7.6224 20 6 -0.8000 -0.0325 7.9176 21 1 -1.1114 -0.9049 7.3623 22 6 -1.6187 0.4905 8.8959 23 7 -1.2397 1.5531 9.5718 24 14 -3.2663 -0.3102 9.2613 25 1 -3.4562 -1.4818 8.3688 26 1 -3.2967 -0.7562 10.6774 27 1 -4.3562 0.6711 9.0279 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0883 0.9953 -1.9693 32 1 3.9095 -0.1657 -3.9795 33 1 3.3120 -2.5222 -4.3708 34 1 1.9009 -3.7204 -2.7471 35 1 1.0771 -2.5586 -0.7385 36 1 1.5950 1.1063 2.7690 37 1 0.2203 -0.0208 2.6795 38 1 1.4007 -1.5828 4.2006 39 1 2.7758 -0.4560 4.2906 40 1 3.1104 -0.8649 7.0112 41 1 1.7591 -1.7145 7.7992 42 1 2.0795 -1.9663 6.0664 43 1 1.1479 0.5980 8.5193 44 1 0.3697 1.6455 7.3090 45 1 -1.8159 1.9212 10.2597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190889168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:10 Heat of formation + Delta-G solvation = -83.310002 kcal Electronic energy + Delta-G solvation = -26964.856369 eV Core-core repulsion = 23074.794111 eV Total energy + Delta-G solvation = -3890.062258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.75354 -39.11483 -37.15719 -36.17332 -34.98577 -34.84945 -33.21092 -32.47119 -31.27033 -29.87976 -28.02354 -26.09195 -24.85431 -24.79178 -22.96634 -22.42987 -21.56381 -18.96861 -18.59993 -17.36578 -17.28073 -16.71644 -16.51736 -16.26483 -15.76635 -15.45450 -15.34853 -15.10941 -14.96437 -14.34342 -14.15747 -13.75297 -13.71596 -13.42149 -13.33991 -12.83766 -12.66681 -12.40178 -12.35834 -12.29807 -12.18238 -12.13779 -12.05927 -11.87404 -11.60914 -11.42575 -11.32932 -11.22735 -11.03167 -10.87313 -10.63383 -10.50588 -10.19374 -9.65104 -9.27637 -9.12017 -9.01230 -8.47348 -7.71661 -6.07959 -4.12892 -0.30541 0.97329 1.04677 2.52021 3.27358 3.27704 3.30173 3.35436 3.40085 3.41191 3.79010 3.88641 4.03484 4.29825 4.41546 4.47423 4.58310 4.66470 4.73489 4.79866 4.85049 5.02016 5.10835 5.15968 5.22136 5.26476 5.34073 5.38909 5.50133 5.58584 5.66841 5.70269 5.70858 5.81229 5.91458 6.07830 6.13507 6.17183 6.19545 6.60955 6.99455 7.38542 7.47335 7.88219 8.18878 8.32623 8.84178 8.99813 9.52332 11.00188 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.002319 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.811081 B =12069.760438 C =12381.644890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.530 4.530 3 H 0.144 0.856 4 C -0.081 4.081 5 C -0.100 4.100 6 C -0.121 4.121 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.118 4.118 10 S 2.412 3.588 11 O -0.930 6.930 12 O -0.934 6.934 13 C -0.590 4.590 14 C -0.134 4.134 15 C 0.512 3.488 16 O -0.540 6.540 17 N -0.600 5.600 18 C 0.077 3.923 19 C 0.244 3.756 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.045 0.955 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.022 -5.804 -24.143 26.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.638 4.638 3 H 0.162 0.838 4 C -0.083 4.083 5 C -0.119 4.119 6 C -0.139 4.139 7 C -0.133 4.133 8 C -0.133 4.133 9 C -0.136 4.136 10 S 2.595 3.405 11 O -0.927 6.927 12 O -0.931 6.931 13 C -0.720 4.720 14 C -0.175 4.175 15 C 0.297 3.703 16 O -0.417 6.417 17 N -0.332 5.332 18 C -0.067 4.067 19 C 0.125 3.875 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.533 5.533 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.158 -5.897 -24.035 26.388 hybrid contribution -1.385 0.345 0.244 1.448 sum 7.773 -5.553 -23.791 25.637 Atomic orbital electron populations 1.21799 0.88778 1.04595 1.05017 1.29147 1.07157 1.12974 1.14476 0.83751 1.18973 0.99822 0.94263 0.95220 1.21100 0.96757 1.00073 0.93939 1.21171 1.00126 0.95051 0.97558 1.21279 0.97895 0.94801 0.99321 1.21189 0.97735 1.00220 0.94167 1.21488 0.99797 0.93874 0.98457 1.08508 0.76514 0.77345 0.78094 1.93555 1.81804 1.31811 1.85558 1.93578 1.27887 1.86418 1.85253 1.30123 1.15330 1.14751 1.11754 1.21430 1.02732 1.01613 0.91767 1.19883 0.82337 0.84631 0.83451 1.90657 1.37938 1.30420 1.82725 1.48157 1.45387 1.32907 1.06771 1.21731 0.93309 0.89493 1.02132 1.19341 0.91764 0.92866 0.83572 1.21465 1.02670 1.13422 1.18997 0.92339 1.24951 0.98407 0.94970 0.95875 1.69941 1.37612 1.22071 1.23722 0.86428 0.83617 0.79342 0.77943 1.19770 1.20923 1.20874 0.90033 0.90272 0.90049 0.85505 0.85583 0.85719 0.85372 0.83886 0.84149 0.83830 0.87721 0.87988 0.93352 0.90418 0.92259 0.94798 0.93736 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.71 37.16 0.32 -0.76 16 2 C -0.53 -4.57 2.99 -27.88 -0.08 -4.65 16 3 H 0.14 0.89 7.88 -51.92 -0.41 0.48 16 4 C -0.08 -0.80 4.78 -104.62 -0.50 -1.30 16 5 C -0.10 -0.88 9.67 -39.59 -0.38 -1.26 16 6 C -0.12 -0.95 10.05 -39.59 -0.40 -1.34 16 7 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 8 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 9 C -0.12 -1.18 8.47 -39.58 -0.34 -1.52 16 10 S 2.41 27.31 4.18 -107.50 -0.45 26.86 16 11 O -0.93 -12.40 16.09 -57.83 -0.93 -13.33 16 12 O -0.93 -13.31 18.10 -57.83 -1.05 -14.36 16 13 C -0.59 -7.02 4.49 37.16 0.17 -6.85 16 14 C -0.13 -1.94 4.26 -27.88 -0.12 -2.06 16 15 C 0.51 10.33 7.67 -10.98 -0.08 10.25 16 16 O -0.54 -12.89 15.56 5.56 0.09 -12.80 16 17 N -0.60 -12.63 2.86 -182.95 -0.52 -13.15 16 18 C 0.08 1.22 10.24 59.84 0.61 1.83 16 19 C 0.24 6.33 5.16 -5.19 -0.03 6.30 16 20 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 21 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 24 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.59 7.39 -51.93 -0.38 0.20 16 30 H 0.08 0.54 6.39 -51.93 -0.33 0.21 16 31 H 0.13 0.86 7.95 -52.49 -0.42 0.44 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.14 1.42 6.18 -52.49 -0.32 1.10 16 36 H 0.14 1.49 8.10 -51.92 -0.42 1.07 16 37 H 0.14 1.59 6.73 -51.93 -0.35 1.24 16 38 H 0.10 1.34 7.40 -51.93 -0.38 0.95 16 39 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 42 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 43 H 0.03 0.89 8.07 -51.94 -0.42 0.47 16 44 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -37.68 385.06 -10.04 -47.73 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.66 Total: -0.19 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.04 Total: -17.57 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.21 Total: -38.83 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.89 Total: -40.49 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 27.31 SS G_CDS: -0.45 Total: 26.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.68 -10.04 -47.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190889168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.582 kcal (2) G-P(sol) polarization free energy of solvation -37.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds