Wall clock time and date at job start Tue Mar 31 2020 23:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47101 * 2 1 4 4 C 1.50702 * 109.47354 * 240.00117 * 2 1 3 5 5 C 1.38234 * 120.00272 * 119.99697 * 4 2 1 6 6 C 1.38230 * 119.99880 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 9 9 C 1.38234 * 119.99464 * 300.02413 * 4 2 1 10 10 S 1.81396 * 109.47208 * 119.99835 * 2 1 3 11 11 O 1.42104 * 108.57682 * 59.48603 * 10 2 1 12 12 O 1.42101 * 108.58180 * 190.51237 * 10 2 1 13 13 C 1.81404 * 101.92227 * 305.00111 * 10 2 1 14 14 C 1.52999 * 109.46816 * 179.97438 * 13 10 2 15 15 C 1.50706 * 109.47011 * 179.97438 * 14 13 10 16 16 O 1.21278 * 119.99600 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99963 * 179.97438 * 15 14 13 18 18 C 1.46495 * 120.00243 * 0.02562 * 17 15 14 19 19 C 1.46510 * 119.99777 * 180.02562 * 17 15 14 20 20 C 1.50703 * 109.46900 * 90.00198 * 19 17 15 21 21 H 1.07993 * 120.00154 * 359.97438 * 20 19 17 22 22 C 1.37874 * 119.99547 * 180.02562 * 20 19 17 23 23 N 1.31518 * 120.00487 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47249 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47186 * 119.99555 * 24 22 20 27 27 H 1.48501 * 109.47176 * 239.99739 * 24 22 20 28 28 H 1.09006 * 109.46956 * 60.00098 * 1 2 3 29 29 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46951 * 300.00128 * 1 2 3 31 31 H 1.08001 * 119.99769 * 0.02562 * 5 4 2 32 32 H 1.08000 * 120.00376 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.00616 * 179.72578 * 7 6 5 34 34 H 1.08001 * 120.00299 * 179.97438 * 8 7 6 35 35 H 1.07997 * 120.00481 * 359.97438 * 9 4 2 36 36 H 1.08999 * 109.46780 * 299.99422 * 13 10 2 37 37 H 1.08993 * 109.47242 * 59.99820 * 13 10 2 38 38 H 1.09000 * 109.47577 * 299.99768 * 14 13 10 39 39 H 1.09005 * 109.47278 * 60.00426 * 14 13 10 40 40 H 1.09004 * 109.46608 * 90.00432 * 18 17 15 41 41 H 1.09004 * 109.46940 * 209.99800 * 18 17 15 42 42 H 1.08996 * 109.47287 * 330.00469 * 18 17 15 43 43 H 1.08989 * 109.46875 * 210.00059 * 19 17 15 44 44 H 1.08996 * 109.46957 * 330.00295 * 19 17 15 45 45 H 0.96992 * 119.99833 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.8271 -0.0386 -2.1404 6 6 3.2883 -0.6904 -3.2688 7 6 2.9553 -2.0142 -3.4870 8 6 2.1615 -2.6863 -2.5765 9 6 1.6980 -2.0337 -1.4494 10 16 2.1347 -0.8551 1.4811 11 8 1.6408 -2.1874 1.4680 12 8 3.5342 -0.6350 1.5914 13 6 1.2997 0.0577 2.8079 14 6 1.6962 -0.5343 4.1619 15 6 1.0031 0.2244 5.2642 16 8 0.2644 1.1474 4.9934 17 7 1.2033 -0.1234 6.5508 18 6 2.0951 -1.2387 6.8778 19 6 0.5290 0.6138 7.6224 20 6 -0.8000 -0.0325 7.9176 21 1 -1.1114 -0.9049 7.3623 22 6 -1.6187 0.4905 8.8959 23 7 -1.2397 1.5531 9.5718 24 14 -3.2663 -0.3102 9.2613 25 1 -3.4562 -1.4818 8.3688 26 1 -3.2967 -0.7562 10.6774 27 1 -4.3562 0.6711 9.0279 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0883 0.9953 -1.9693 32 1 3.9095 -0.1657 -3.9795 33 1 3.3120 -2.5222 -4.3708 34 1 1.9009 -3.7204 -2.7471 35 1 1.0771 -2.5586 -0.7385 36 1 1.5950 1.1063 2.7690 37 1 0.2203 -0.0208 2.6795 38 1 1.4007 -1.5828 4.2006 39 1 2.7758 -0.4560 4.2906 40 1 3.1104 -0.8649 7.0112 41 1 1.7591 -1.7145 7.7992 42 1 2.0795 -1.9663 6.0664 43 1 1.1479 0.5980 8.5193 44 1 0.3697 1.6455 7.3090 45 1 -1.8159 1.9212 10.2597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190889168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:09 Heat of formation + Delta-G solvation = -108.893276 kcal Electronic energy + Delta-G solvation = -26965.965743 eV Core-core repulsion = 23074.794111 eV Total energy + Delta-G solvation = -3891.171633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.71751 -40.36175 -38.12200 -37.14469 -36.68131 -35.52261 -34.85183 -34.09432 -31.87070 -30.56162 -29.87470 -27.48248 -26.41281 -25.43059 -24.16037 -23.57193 -22.28602 -20.11701 -19.84176 -18.72733 -18.41447 -18.04300 -17.62123 -17.28504 -17.01236 -16.67029 -16.61163 -16.22563 -16.05058 -15.64891 -15.09301 -14.81142 -14.45267 -14.31522 -14.12219 -14.07863 -14.00403 -13.75735 -13.60074 -13.47341 -13.23558 -13.18101 -13.11326 -13.03145 -12.85692 -12.76606 -12.53054 -12.43708 -12.23403 -12.20994 -12.00803 -11.89107 -11.68864 -11.31875 -10.68702 -10.66080 -9.89887 -9.72626 -9.46363 -8.23912 -6.38711 -1.18120 0.34216 0.42692 1.36515 1.38224 1.50393 1.67282 1.74601 2.22722 2.38989 2.59071 2.77847 2.98372 3.05772 3.30453 3.38061 3.59825 3.74038 3.82944 4.00095 4.12010 4.20384 4.24241 4.28264 4.43964 4.51161 4.53960 4.58139 4.63830 4.70425 4.75804 4.84053 4.93995 5.00299 5.01480 5.11129 5.17747 5.21168 5.47681 5.50856 5.53711 5.56964 5.80272 6.02464 6.03996 6.66278 6.73901 7.25018 7.40837 8.83429 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.002319 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.811081 B =12069.760438 C =12381.644890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.510 4.510 3 H 0.172 0.828 4 C -0.101 4.101 5 C -0.112 4.112 6 C -0.126 4.126 7 C -0.117 4.117 8 C -0.128 4.128 9 C -0.140 4.140 10 S 2.424 3.576 11 O -0.955 6.955 12 O -0.966 6.966 13 C -0.596 4.596 14 C -0.132 4.132 15 C 0.503 3.497 16 O -0.587 6.587 17 N -0.611 5.611 18 C 0.070 3.930 19 C 0.257 3.743 20 C -0.542 4.542 21 H 0.054 0.946 22 C 0.006 3.994 23 N -0.928 5.928 24 Si 0.969 3.031 25 H -0.267 1.267 26 H -0.270 1.270 27 H -0.281 1.281 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.025 0.975 44 H 0.002 0.998 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.277 -6.777 -26.098 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.621 4.621 3 H 0.190 0.810 4 C -0.103 4.103 5 C -0.131 4.131 6 C -0.144 4.144 7 C -0.135 4.135 8 C -0.146 4.146 9 C -0.159 4.159 10 S 2.610 3.390 11 O -0.952 6.952 12 O -0.963 6.963 13 C -0.725 4.725 14 C -0.172 4.172 15 C 0.290 3.710 16 O -0.468 6.468 17 N -0.342 5.342 18 C -0.072 4.072 19 C 0.135 3.865 20 C -0.581 4.581 21 H 0.072 0.928 22 C -0.193 4.193 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.191 1.191 26 H -0.195 1.195 27 H -0.206 1.206 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.043 0.957 44 H 0.020 0.980 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.459 -6.921 -25.953 28.476 hybrid contribution -1.416 0.664 0.745 1.732 sum 8.043 -6.257 -25.207 27.189 Atomic orbital electron populations 1.21913 0.87943 1.04873 1.06089 1.28973 1.07782 1.13689 1.11658 0.81003 1.19156 1.00765 0.94482 0.95884 1.21441 0.96412 1.01143 0.94098 1.21560 0.99900 0.95281 0.97665 1.21644 0.97092 0.95000 0.99789 1.21487 0.97892 1.01164 0.94030 1.21622 1.00621 0.94459 0.99187 1.08068 0.75550 0.76860 0.78484 1.93517 1.81895 1.33650 1.86130 1.93532 1.29913 1.86798 1.86065 1.30201 1.15977 1.15530 1.10764 1.21483 1.03486 1.01720 0.90554 1.20855 0.81766 0.84278 0.84081 1.90620 1.40081 1.32581 1.83496 1.48195 1.45849 1.33877 1.06301 1.22040 0.93387 0.88635 1.03186 1.18818 0.91692 0.91332 0.84632 1.21727 1.03807 1.13422 1.19143 0.92774 1.25877 1.02295 0.95478 0.95625 1.70055 1.39153 1.23330 1.24251 0.85348 0.78598 0.78398 0.78341 1.19102 1.19505 1.20639 0.88706 0.90522 0.89187 0.83675 0.83125 0.83226 0.83903 0.84650 0.83106 0.83269 0.85830 0.85589 0.90744 0.91101 0.88850 0.95711 0.97994 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.71 71.98 0.63 -1.40 16 2 C -0.51 -7.93 2.99 29.85 0.09 -7.84 16 3 H 0.17 1.67 7.88 -2.39 -0.02 1.65 16 4 C -0.10 -1.84 4.78 -19.87 -0.09 -1.93 16 5 C -0.11 -1.72 9.67 22.27 0.22 -1.51 16 6 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 7 C -0.12 -1.54 10.05 22.27 0.22 -1.32 16 8 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 9 C -0.14 -2.72 8.47 22.27 0.19 -2.53 16 10 S 2.42 52.21 4.18 -56.49 -0.24 51.97 16 11 O -0.95 -24.89 16.09 -127.37 -2.05 -26.94 16 12 O -0.97 -26.52 18.10 -127.37 -2.31 -28.83 16 13 C -0.60 -13.55 4.49 71.98 0.32 -13.23 16 14 C -0.13 -3.63 4.26 29.85 0.13 -3.51 16 15 C 0.50 20.37 7.67 87.66 0.67 21.04 16 16 O -0.59 -28.83 15.56 -3.02 -0.05 -28.87 16 17 N -0.61 -25.92 2.86 -851.13 -2.43 -28.35 16 18 C 0.07 2.10 10.24 127.77 1.31 3.41 16 19 C 0.26 13.83 5.16 85.63 0.44 14.28 16 20 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16 21 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 22 C 0.01 0.36 5.46 84.65 0.46 0.82 16 23 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 24 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 28 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.08 1.08 7.39 -2.39 -0.02 1.06 16 30 H 0.09 1.05 6.39 -2.39 -0.02 1.04 16 31 H 0.15 1.57 7.95 -2.91 -0.02 1.54 16 32 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.14 2.71 6.18 -2.91 -0.02 2.69 16 36 H 0.15 3.06 8.10 -2.39 -0.02 3.04 16 37 H 0.15 3.19 6.73 -2.39 -0.02 3.18 16 38 H 0.12 2.92 7.40 -2.39 -0.02 2.90 16 39 H 0.13 2.85 8.11 -2.38 -0.02 2.83 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 2.23 8.07 -2.38 -0.02 2.21 16 42 H 0.09 2.16 6.44 -2.39 -0.02 2.15 16 43 H 0.02 1.35 8.07 -2.39 -0.02 1.34 16 44 H 0.00 0.12 7.42 -2.39 -0.02 0.10 16 45 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -83.96 385.06 1.50 -82.46 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.98 Total: 15.40 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 5.27 Total: -27.92 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -2.15 Total: -84.01 kcal Atomic # 8 Polarization: -80.24 SS G_CDS: -4.40 Total: -84.65 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 52.21 SS G_CDS: -0.24 Total: 51.97 kcal Total: -83.96 1.50 -82.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190889168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.432 kcal (2) G-P(sol) polarization free energy of solvation -83.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds