Wall clock time and date at job start Tue Mar 31 2020 22:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47257 * 2 1 4 4 C 1.53000 * 109.47257 * 179.97438 * 3 2 1 5 5 S 1.81396 * 109.47374 * 180.02562 * 4 3 2 6 6 O 1.42102 * 110.54247 * 68.37512 * 5 4 3 7 7 O 1.42103 * 110.54259 * 291.62648 * 5 4 3 8 8 C 1.76196 * 104.45213 * 179.97438 * 5 4 3 9 9 C 1.38364 * 119.85499 * 269.72497 * 8 5 4 10 10 C 1.37957 * 120.14261 * 180.27800 * 9 8 5 11 11 C 1.39576 * 119.85603 * 359.97438 * 10 9 8 12 12 C 1.47848 * 120.14267 * 179.97438 * 11 10 9 13 13 O 1.21548 * 119.99951 * 180.02562 * 12 11 10 14 14 N 1.34776 * 119.99893 * 0.02562 * 12 11 10 15 15 C 1.46501 * 119.99686 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47060 * 325.00019 * 15 14 12 17 17 C 1.52999 * 109.47358 * 85.00298 * 15 14 12 18 18 C 1.50696 * 109.46942 * 205.00087 * 15 14 12 19 19 H 1.08005 * 120.00236 * 0.02562 * 18 15 14 20 20 C 1.37883 * 119.99797 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00230 * 0.02562 * 20 18 15 22 22 Si 1.86806 * 119.99625 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47260 * 90.00436 * 22 20 18 24 24 H 1.48502 * 109.46703 * 209.99827 * 22 20 18 25 25 H 1.48491 * 109.47268 * 329.99979 * 22 20 18 26 26 C 1.39575 * 119.71174 * 0.02562 * 11 10 9 27 27 C 1.37955 * 119.85214 * 0.02562 * 26 11 10 28 28 H 1.09003 * 109.47037 * 299.99746 * 1 2 3 29 29 H 1.08997 * 109.47274 * 59.99361 * 1 2 3 30 30 H 1.08997 * 109.47478 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47037 * 240.00254 * 2 1 3 32 32 H 1.09003 * 109.46906 * 120.00372 * 2 1 3 33 33 H 1.09003 * 109.46890 * 60.00164 * 3 2 1 34 34 H 1.08997 * 109.47500 * 300.00500 * 3 2 1 35 35 H 1.08994 * 109.46934 * 60.00034 * 4 3 2 36 36 H 1.09003 * 109.46906 * 300.00372 * 4 3 2 37 37 H 1.07993 * 119.92259 * 0.28050 * 9 8 5 38 38 H 1.08000 * 120.06785 * 179.97438 * 10 9 8 39 39 H 0.96994 * 120.00399 * 0.02562 * 14 12 11 40 40 H 1.08996 * 109.47143 * 59.99304 * 17 15 14 41 41 H 1.08995 * 109.47123 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.46996 * 299.99894 * 17 15 14 43 43 H 0.96999 * 120.00333 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.07330 * 179.97438 * 26 11 10 45 45 H 1.08004 * 119.92780 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 16 4.1747 3.1526 0.0014 6 8 3.8781 3.7859 1.2385 7 8 3.8791 3.7866 -1.2355 8 6 5.9299 2.9984 0.0029 9 6 6.6156 2.9437 1.2034 10 6 7.9903 2.8287 1.2115 11 6 8.6895 2.7671 0.0050 12 6 10.1629 2.6444 0.0063 13 8 10.7692 2.5914 -1.0459 14 7 10.8337 2.5914 1.1740 15 6 12.2937 2.4704 1.1752 16 1 12.6076 1.8511 0.3350 17 6 12.9207 3.8601 1.0468 18 6 12.7439 1.8334 2.4645 19 1 12.0153 1.5469 3.2086 20 6 14.0859 1.6154 2.6940 21 7 14.9730 1.9638 1.7878 22 14 14.6439 0.8250 4.2920 23 1 14.6870 -0.6500 4.1261 24 1 15.9978 1.3232 4.6442 25 1 13.6907 1.1737 5.3759 26 6 7.9918 2.8228 -1.2025 27 6 6.6171 2.9389 -1.1966 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9285 -0.8891 36 1 3.9329 0.9287 0.8909 37 1 6.0733 2.9910 2.1361 38 1 8.5243 2.7865 2.1493 39 1 10.3499 2.6333 2.0136 40 1 12.6067 4.4794 1.8870 41 1 14.0070 3.7700 1.0472 42 1 12.5951 4.3209 0.1142 43 1 15.9171 1.8101 1.9491 44 1 8.5269 2.7760 -2.1394 45 1 6.0760 2.9825 -2.1303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192388968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:14 Heat of formation + Delta-G solvation = -98.681769 kcal Electronic energy + Delta-G solvation = -26297.534024 eV Core-core repulsion = 22406.805196 eV Total energy + Delta-G solvation = -3890.728828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.96852 -38.13135 -37.37653 -36.35779 -36.14403 -34.97536 -32.74102 -31.59657 -31.19762 -30.98076 -28.82650 -25.35996 -25.03127 -24.27443 -22.93619 -21.80049 -21.24314 -19.76934 -19.20922 -18.43059 -17.53298 -16.69195 -16.57005 -16.08041 -15.84248 -15.40285 -15.04120 -14.74401 -14.52329 -14.44951 -14.24375 -13.87628 -13.79673 -13.57281 -13.32990 -12.94771 -12.82895 -12.50192 -12.35628 -12.24984 -12.23615 -12.08458 -11.79651 -11.78781 -11.40058 -11.19268 -11.18366 -11.15935 -11.05154 -10.84718 -10.71467 -10.38930 -10.31104 -9.47262 -9.36041 -9.24759 -9.14186 -8.63772 -8.07834 -6.19732 -4.29785 -0.29345 0.36383 1.12664 2.54779 2.84910 3.19853 3.26678 3.28264 3.52038 3.77996 3.81104 3.89977 4.04098 4.24161 4.29366 4.42152 4.54006 4.67317 4.68606 4.91914 4.97626 5.01593 5.10969 5.12520 5.15035 5.25598 5.28619 5.36605 5.43241 5.56296 5.64869 5.70970 5.78415 5.85170 5.94244 6.19132 6.58122 6.74014 6.86927 7.04648 7.28758 7.43682 7.59556 7.80785 8.05346 8.47561 8.65511 8.90594 9.37531 10.86242 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.002160 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.484449 B =12958.244859 C =13680.434383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.116 4.116 4 C -0.607 4.607 5 S 2.497 3.503 6 O -0.936 6.936 7 O -0.936 6.936 8 C -0.652 4.652 9 C -0.031 4.031 10 C -0.111 4.111 11 C -0.062 4.062 12 C 0.534 3.466 13 O -0.542 6.542 14 N -0.696 5.696 15 C 0.262 3.738 16 H 0.052 0.948 17 C -0.148 4.148 18 C -0.536 4.536 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.882 5.882 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.088 4.088 27 C -0.033 4.033 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.390 0.610 40 H 0.028 0.972 41 H 0.092 0.908 42 H 0.015 0.985 43 H 0.265 0.735 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.028 -2.537 -2.321 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.155 4.155 4 C -0.736 4.736 5 S 2.678 3.322 6 O -0.933 6.933 7 O -0.933 6.933 8 C -0.740 4.740 9 C -0.050 4.050 10 C -0.131 4.131 11 C -0.065 4.065 12 C 0.318 3.682 13 O -0.422 6.422 14 N -0.344 5.344 15 C 0.161 3.839 16 H 0.069 0.931 17 C -0.206 4.206 18 C -0.575 4.575 19 H 0.080 0.920 20 C -0.137 4.137 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.108 4.108 27 C -0.052 4.052 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.223 0.777 40 H 0.047 0.953 41 H 0.111 0.889 42 H 0.035 0.965 43 H 0.075 0.925 44 H 0.164 0.836 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -25.757 -1.796 -3.079 26.003 hybrid contribution 0.933 -1.074 1.308 1.932 sum -24.825 -2.869 -1.771 25.053 Atomic orbital electron populations 1.21817 0.95344 1.02098 1.02224 1.21486 0.96175 0.95081 1.02846 1.21435 0.89966 1.00116 1.03988 1.30346 1.06556 1.24236 1.12502 1.05422 0.74365 0.77639 0.74798 1.93577 1.83330 1.71948 1.44421 1.93577 1.83346 1.71929 1.44465 1.30591 1.25597 1.18163 0.99612 1.20867 0.94564 0.92913 0.96653 1.21554 0.94349 0.99130 0.98052 1.20778 0.94903 0.96609 0.94254 1.18233 0.86034 0.78647 0.85281 1.90750 1.69279 1.50844 1.31287 1.46563 1.10955 1.70320 1.06513 1.18853 0.72317 0.94282 0.98418 0.93059 1.22086 1.04613 0.97087 0.96848 1.21173 0.92585 1.41417 1.02304 0.92010 1.24895 0.96397 0.95249 0.97152 1.69893 1.01870 1.46138 1.33989 0.86414 0.78101 0.79453 0.82930 1.20525 1.21009 1.19815 1.21451 0.93644 0.97106 0.98565 1.20910 0.94566 0.93059 0.96630 0.92411 0.92415 0.92344 0.91376 0.91358 0.90052 0.90058 0.84389 0.84367 0.83674 0.84234 0.77659 0.95308 0.88921 0.96549 0.92454 0.83597 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.12 -0.56 5.93 -26.73 -0.16 -0.71 16 3 C -0.12 -0.63 5.22 -26.73 -0.14 -0.77 16 4 C -0.61 -3.17 5.98 37.16 0.22 -2.95 16 5 S 2.50 22.35 5.16 -107.50 -0.55 21.80 16 6 O -0.94 -10.92 17.10 -57.54 -0.98 -11.91 16 7 O -0.94 -10.97 17.12 -57.54 -0.98 -11.95 16 8 C -0.65 -6.91 5.66 -39.49 -0.22 -7.13 16 9 C -0.03 -0.34 9.45 -39.64 -0.37 -0.71 16 10 C -0.11 -1.41 9.54 -39.19 -0.37 -1.78 16 11 C -0.06 -0.96 5.87 -104.97 -0.62 -1.57 16 12 C 0.53 10.60 7.74 -12.33 -0.10 10.50 16 13 O -0.54 -12.74 16.01 5.32 0.09 -12.66 16 14 N -0.70 -14.17 5.02 -55.88 -0.28 -14.45 16 15 C 0.26 6.55 2.56 -69.08 -0.18 6.37 16 16 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 17 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 18 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.88 -24.37 11.32 55.43 0.63 -23.74 16 22 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 C -0.09 -1.21 9.60 -39.19 -0.38 -1.58 16 27 C -0.03 -0.37 9.45 -39.64 -0.37 -0.74 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.14 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.15 1.23 7.55 -52.49 -0.40 0.84 16 38 H 0.14 1.52 6.41 -52.49 -0.34 1.19 16 39 H 0.39 6.72 6.57 -40.82 -0.27 6.45 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.15 1.98 7.65 -52.49 -0.40 1.58 16 45 H 0.15 1.28 7.56 -52.48 -0.40 0.88 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -34.69 387.80 -10.34 -45.03 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.70 Total: 4.02 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.37 Total: -17.17 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.35 Total: -38.19 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.88 Total: -36.52 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 22.35 SS G_CDS: -0.55 Total: 21.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.69 -10.34 -45.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192388968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.650 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds