Wall clock time and date at job start Tue Mar 31 2020 22:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47257 * 2 1 4 4 C 1.53000 * 109.47257 * 179.97438 * 3 2 1 5 5 S 1.81396 * 109.47374 * 180.02562 * 4 3 2 6 6 O 1.42102 * 110.54247 * 68.37512 * 5 4 3 7 7 O 1.42103 * 110.54259 * 291.62648 * 5 4 3 8 8 C 1.76196 * 104.45213 * 179.97438 * 5 4 3 9 9 C 1.38364 * 119.85499 * 269.72497 * 8 5 4 10 10 C 1.37957 * 120.14261 * 180.27800 * 9 8 5 11 11 C 1.39576 * 119.85603 * 359.97438 * 10 9 8 12 12 C 1.47848 * 120.14267 * 179.97438 * 11 10 9 13 13 O 1.21548 * 119.99951 * 180.02562 * 12 11 10 14 14 N 1.34776 * 119.99893 * 0.02562 * 12 11 10 15 15 C 1.46501 * 119.99686 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47060 * 325.00019 * 15 14 12 17 17 C 1.52999 * 109.47358 * 85.00298 * 15 14 12 18 18 C 1.50696 * 109.46942 * 205.00087 * 15 14 12 19 19 H 1.08005 * 120.00236 * 0.02562 * 18 15 14 20 20 C 1.37883 * 119.99797 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00230 * 0.02562 * 20 18 15 22 22 Si 1.86806 * 119.99625 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47260 * 90.00436 * 22 20 18 24 24 H 1.48502 * 109.46703 * 209.99827 * 22 20 18 25 25 H 1.48491 * 109.47268 * 329.99979 * 22 20 18 26 26 C 1.39575 * 119.71174 * 0.02562 * 11 10 9 27 27 C 1.37955 * 119.85214 * 0.02562 * 26 11 10 28 28 H 1.09003 * 109.47037 * 299.99746 * 1 2 3 29 29 H 1.08997 * 109.47274 * 59.99361 * 1 2 3 30 30 H 1.08997 * 109.47478 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47037 * 240.00254 * 2 1 3 32 32 H 1.09003 * 109.46906 * 120.00372 * 2 1 3 33 33 H 1.09003 * 109.46890 * 60.00164 * 3 2 1 34 34 H 1.08997 * 109.47500 * 300.00500 * 3 2 1 35 35 H 1.08994 * 109.46934 * 60.00034 * 4 3 2 36 36 H 1.09003 * 109.46906 * 300.00372 * 4 3 2 37 37 H 1.07993 * 119.92259 * 0.28050 * 9 8 5 38 38 H 1.08000 * 120.06785 * 179.97438 * 10 9 8 39 39 H 0.96994 * 120.00399 * 0.02562 * 14 12 11 40 40 H 1.08996 * 109.47143 * 59.99304 * 17 15 14 41 41 H 1.08995 * 109.47123 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.46996 * 299.99894 * 17 15 14 43 43 H 0.96999 * 120.00333 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.07330 * 179.97438 * 26 11 10 45 45 H 1.08004 * 119.92780 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 16 4.1747 3.1526 0.0014 6 8 3.8781 3.7859 1.2385 7 8 3.8791 3.7866 -1.2355 8 6 5.9299 2.9984 0.0029 9 6 6.6156 2.9437 1.2034 10 6 7.9903 2.8287 1.2115 11 6 8.6895 2.7671 0.0050 12 6 10.1629 2.6444 0.0063 13 8 10.7692 2.5914 -1.0459 14 7 10.8337 2.5914 1.1740 15 6 12.2937 2.4704 1.1752 16 1 12.6076 1.8511 0.3350 17 6 12.9207 3.8601 1.0468 18 6 12.7439 1.8334 2.4645 19 1 12.0153 1.5469 3.2086 20 6 14.0859 1.6154 2.6940 21 7 14.9730 1.9638 1.7878 22 14 14.6439 0.8250 4.2920 23 1 14.6870 -0.6500 4.1261 24 1 15.9978 1.3232 4.6442 25 1 13.6907 1.1737 5.3759 26 6 7.9918 2.8228 -1.2025 27 6 6.6171 2.9389 -1.1966 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9285 -0.8891 36 1 3.9329 0.9287 0.8909 37 1 6.0733 2.9910 2.1361 38 1 8.5243 2.7865 2.1493 39 1 10.3499 2.6333 2.0136 40 1 12.6067 4.4794 1.8870 41 1 14.0070 3.7700 1.0472 42 1 12.5951 4.3209 0.1142 43 1 15.9171 1.8101 1.9491 44 1 8.5269 2.7760 -2.1394 45 1 6.0760 2.9825 -2.1303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192388968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:13 Heat of formation + Delta-G solvation = -122.440072 kcal Electronic energy + Delta-G solvation = -26298.564262 eV Core-core repulsion = 22406.805196 eV Total energy + Delta-G solvation = -3891.759066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.29131 -39.45455 -38.17932 -37.03814 -36.83713 -36.63208 -34.53238 -32.86498 -32.19543 -31.37550 -30.59459 -27.38765 -25.89365 -25.06850 -23.94186 -22.91900 -22.10869 -21.40019 -20.02941 -19.70243 -18.65303 -17.80157 -17.48778 -17.21526 -17.09122 -16.54096 -16.20046 -16.03946 -15.82209 -15.56681 -15.16358 -14.84167 -14.66236 -14.44018 -14.25555 -14.12306 -14.01055 -13.74688 -13.67329 -13.17795 -13.07906 -13.01340 -12.92306 -12.79734 -12.64164 -12.42496 -12.36208 -12.29237 -12.20219 -12.15137 -11.99556 -11.49279 -11.32339 -11.17082 -10.98714 -10.63378 -10.52871 -10.19270 -9.87442 -8.20219 -6.38238 -1.00225 -0.65559 0.17446 1.45006 1.45333 1.56116 1.59658 1.85158 2.24355 2.47276 2.54859 2.92439 3.10601 3.11625 3.59539 3.61167 3.69389 3.80678 3.87719 4.07965 4.17130 4.23736 4.39353 4.46224 4.59447 4.63619 4.68303 4.77909 4.82300 4.86283 4.89713 4.92318 4.94321 5.02783 5.03125 5.16384 5.26365 5.33715 5.36223 5.48245 5.51346 5.60263 5.64752 5.83053 6.03753 6.67125 6.78582 7.23517 7.38904 8.86252 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.002160 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.484449 B =12958.244859 C =13680.434383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 C -0.129 4.129 4 C -0.581 4.581 5 S 2.504 3.496 6 O -0.964 6.964 7 O -0.967 6.967 8 C -0.644 4.644 9 C -0.030 4.030 10 C -0.108 4.108 11 C -0.089 4.089 12 C 0.533 3.467 13 O -0.590 6.590 14 N -0.692 5.692 15 C 0.268 3.732 16 H 0.003 0.997 17 C -0.135 4.135 18 C -0.547 4.547 19 H 0.076 0.924 20 C 0.014 3.986 21 N -0.917 5.917 22 Si 0.975 3.025 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.258 1.258 26 C -0.098 4.098 27 C -0.031 4.031 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.406 0.594 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.011 0.989 43 H 0.266 0.734 44 H 0.137 0.863 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.799 -3.649 -0.456 29.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.156 4.156 3 C -0.167 4.167 4 C -0.714 4.714 5 S 2.688 3.312 6 O -0.961 6.961 7 O -0.964 6.964 8 C -0.729 4.729 9 C -0.048 4.048 10 C -0.127 4.127 11 C -0.092 4.092 12 C 0.320 3.680 13 O -0.472 6.472 14 N -0.341 5.341 15 C 0.165 3.835 16 H 0.021 0.979 17 C -0.194 4.194 18 C -0.585 4.585 19 H 0.095 0.905 20 C -0.187 4.187 21 N -0.555 5.555 22 Si 0.799 3.201 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.182 1.182 26 C -0.117 4.117 27 C -0.050 4.050 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.192 0.808 38 H 0.173 0.827 39 H 0.243 0.757 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.155 0.845 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -28.534 -2.859 -1.191 28.702 hybrid contribution 1.616 -0.758 0.663 1.904 sum -26.918 -3.616 -0.529 27.165 Atomic orbital electron populations 1.21856 0.95412 1.02367 1.02266 1.21509 0.96181 0.94480 1.03479 1.21604 0.89823 1.00833 1.04482 1.30178 1.06396 1.19702 1.15144 1.05282 0.73162 0.79309 0.73451 1.93541 1.83127 1.74200 1.45242 1.93539 1.83191 1.74251 1.45444 1.31000 1.26910 1.15782 0.99237 1.21219 0.93807 0.91757 0.98023 1.21722 0.95245 0.98301 0.97430 1.20404 0.91855 1.00675 0.96267 1.18891 0.88041 0.76898 0.84143 1.90713 1.70880 1.52826 1.32789 1.46262 1.09328 1.70720 1.07795 1.18460 0.74971 0.93473 0.96598 0.97947 1.21915 1.03097 0.97267 0.97109 1.21502 0.93151 1.41318 1.02562 0.90547 1.25829 0.96558 0.95714 1.00562 1.70046 1.02148 1.47234 1.36035 0.85299 0.77636 0.78209 0.78917 1.20316 1.21069 1.18219 1.21494 0.94835 0.97636 0.97770 1.21140 0.93416 0.92254 0.98153 0.92399 0.92440 0.91989 0.90796 0.90706 0.89718 0.89826 0.81980 0.81770 0.80789 0.82728 0.75689 0.93910 0.91174 0.96997 0.92469 0.84493 0.81349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.91 71.98 0.71 -0.34 16 2 C -0.12 -0.73 5.93 30.59 0.18 -0.55 16 3 C -0.13 -0.96 5.22 30.59 0.16 -0.80 16 4 C -0.58 -3.68 5.98 71.98 0.43 -3.25 16 5 S 2.50 38.10 5.16 -56.49 -0.29 37.81 16 6 O -0.96 -20.16 17.10 -127.65 -2.18 -22.34 16 7 O -0.97 -20.81 17.12 -127.65 -2.18 -23.00 16 8 C -0.64 -11.99 5.66 22.33 0.13 -11.86 16 9 C -0.03 -0.56 9.45 22.23 0.21 -0.35 16 10 C -0.11 -2.53 9.54 22.53 0.21 -2.32 16 11 C -0.09 -2.74 5.87 -20.09 -0.12 -2.86 16 12 C 0.53 21.91 7.74 86.79 0.67 22.58 16 13 O -0.59 -29.35 16.01 -3.87 -0.06 -29.41 16 14 N -0.69 -28.69 5.02 -448.99 -2.25 -30.95 16 15 C 0.27 13.82 2.56 44.24 0.11 13.94 16 16 H 0.00 0.16 7.58 -2.39 -0.02 0.14 16 17 C -0.14 -6.85 9.26 71.98 0.67 -6.19 16 18 C -0.55 -28.35 8.73 25.60 0.22 -28.13 16 19 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 20 C 0.01 0.72 5.30 84.66 0.45 1.17 16 21 N -0.92 -51.94 11.32 21.45 0.24 -51.70 16 22 Si 0.97 41.10 29.54 68.60 2.03 43.13 16 23 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 26 C -0.10 -2.68 9.60 22.53 0.22 -2.46 16 27 C -0.03 -0.65 9.45 22.23 0.21 -0.44 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.16 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.17 2.28 7.55 -2.91 -0.02 2.26 16 38 H 0.16 3.04 6.41 -2.91 -0.02 3.02 16 39 H 0.41 13.79 6.57 -92.71 -0.61 13.18 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 44 H 0.14 3.90 7.65 -2.91 -0.02 3.88 16 45 H 0.17 2.64 7.56 -2.91 -0.02 2.62 16 Total: -1.00 -77.88 387.80 0.15 -77.73 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.39 Total: 20.59 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 4.47 Total: -21.86 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -2.01 Total: -82.64 kcal Atomic # 8 Polarization: -70.32 SS G_CDS: -4.43 Total: -74.75 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 38.10 SS G_CDS: -0.29 Total: 37.81 kcal Total: -77.88 0.15 -77.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192388968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.707 kcal (2) G-P(sol) polarization free energy of solvation -77.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds