Wall clock time and date at job start Tue Mar 31 2020 22:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46926 * 2 1 4 4 H 1.09001 * 109.47065 * 54.67802 * 3 2 1 5 5 C 1.50704 * 109.46586 * 174.67356 * 3 2 1 6 6 H 1.08006 * 119.99603 * 120.00270 * 5 3 2 7 7 C 1.37874 * 120.00033 * 299.99855 * 5 3 2 8 8 N 1.31522 * 119.99481 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00263 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46772 * 90.00203 * 9 7 5 11 11 H 1.48501 * 109.47176 * 209.99551 * 9 7 5 12 12 H 1.48495 * 109.47256 * 329.99842 * 9 7 5 13 13 N 1.46489 * 109.47332 * 294.67376 * 3 2 1 14 14 S 1.65605 * 120.00091 * 143.80163 * 13 3 2 15 15 O 1.42108 * 104.27815 * 179.37606 * 14 13 3 16 16 O 1.42106 * 104.27572 * 307.23067 * 14 13 3 17 17 C 1.81399 * 104.44729 * 63.30255 * 14 13 3 18 18 C 1.53002 * 109.46697 * 179.97438 * 17 14 13 19 19 C 1.50698 * 109.46863 * 179.97438 * 18 17 14 20 20 C 1.38289 * 120.12005 * 269.72449 * 19 18 17 21 21 C 1.37929 * 120.35259 * 179.97438 * 20 19 18 22 22 C 1.39284 * 120.24145 * 0.56179 * 21 20 19 23 23 C 1.38891 * 118.87248 * 359.40108 * 22 21 20 24 24 C 1.37736 * 120.78554 * 0.42784 * 23 22 21 25 25 C 1.51647 * 107.03484 * 180.68578 * 23 22 21 26 26 C 1.54706 * 101.92372 * 15.47499 * 25 23 22 27 27 O 1.36139 * 129.88701 * 179.09659 * 22 21 20 28 28 H 1.08998 * 109.47150 * 295.44278 * 1 2 3 29 29 H 1.08997 * 109.46974 * 55.44825 * 1 2 3 30 30 H 1.09004 * 109.47061 * 175.45079 * 1 2 3 31 31 H 1.09000 * 109.46661 * 239.99802 * 2 1 3 32 32 H 1.09003 * 109.47337 * 120.00238 * 2 1 3 33 33 H 0.97005 * 119.99548 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00132 * 323.80530 * 13 3 2 35 35 H 1.08999 * 109.47078 * 299.99754 * 17 14 13 36 36 H 1.08993 * 109.46877 * 60.00415 * 17 14 13 37 37 H 1.08995 * 109.47465 * 300.00506 * 18 17 14 38 38 H 1.09006 * 109.46858 * 60.00519 * 18 17 14 39 39 H 1.08001 * 119.82379 * 0.18013 * 20 19 18 40 40 H 1.08001 * 119.88041 * 180.27939 * 21 20 19 41 41 H 1.08003 * 120.01027 * 179.76890 * 24 23 22 42 42 H 1.09003 * 110.93870 * 133.63155 * 25 23 22 43 43 H 1.08994 * 110.94101 * 257.27937 * 25 23 22 44 44 H 1.09001 * 110.74856 * 93.01709 * 26 25 23 45 45 H 1.08997 * 110.74686 * 216.18291 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 0.8385 5 6 3.5412 1.4445 0.1319 6 1 4.1507 1.8876 -0.6419 7 6 4.1366 0.8807 1.2403 8 7 5.4468 0.8829 1.3555 9 14 3.0826 0.1137 2.5782 10 1 2.8634 -1.3230 2.2730 11 1 3.7729 0.2420 3.8868 12 1 1.7736 0.8123 2.6386 13 7 1.6592 2.0951 -1.2550 14 16 1.2338 3.6956 -1.2602 15 8 0.9489 3.9780 -2.6235 16 8 0.2238 3.7929 -0.2654 17 6 2.7352 4.5646 -0.7303 18 6 2.4672 6.0706 -0.6952 19 6 3.7144 6.7926 -0.2543 20 6 3.9345 7.0410 1.0881 21 6 5.0746 7.7009 1.4970 22 6 6.0092 8.1336 0.5593 23 6 5.7774 7.8774 -0.7860 24 6 4.6400 7.2150 -1.1917 25 6 6.9561 8.4420 -1.5552 26 6 7.9983 8.6551 -0.4319 27 8 7.1778 8.8085 0.7387 28 1 -0.3633 0.4415 0.9280 29 1 -0.3633 0.5828 -0.8464 30 1 -0.3633 -1.0245 -0.0815 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8657 0.4859 2.1352 34 1 1.6561 1.5898 -2.0830 35 1 3.0209 4.2228 0.2645 36 1 3.5426 4.3559 -1.4321 37 1 2.1817 6.4121 -1.6901 38 1 1.6596 6.2796 0.0064 39 1 3.2115 6.7136 1.8206 40 1 5.2410 7.8869 2.5478 41 1 4.4706 7.0257 -2.2415 42 1 7.3190 7.7261 -2.2926 43 1 6.6946 9.3880 -2.0294 44 1 8.6474 7.7846 -0.3372 45 1 8.5857 9.5547 -0.6158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193492305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:29 Heat of formation + Delta-G solvation = -87.312490 kcal Electronic energy + Delta-G solvation = -27645.642198 eV Core-core repulsion = 23755.406379 eV Total energy + Delta-G solvation = -3890.235819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10238 -37.98260 -36.72219 -36.20940 -35.44362 -33.66682 -32.71470 -32.30838 -31.07200 -29.40041 -28.93350 -27.24325 -24.37615 -23.29995 -22.74158 -21.95766 -20.75933 -20.66882 -18.81763 -17.42973 -17.40111 -16.84814 -16.67728 -16.28496 -15.96302 -15.75168 -15.05509 -14.88911 -14.25624 -14.12001 -13.82433 -13.56502 -13.31796 -13.20819 -13.12904 -12.90023 -12.75636 -12.26397 -12.20941 -12.10733 -11.94327 -11.81773 -11.69162 -11.58792 -11.49913 -11.23240 -11.17059 -10.86125 -10.79595 -10.73085 -10.59056 -10.31156 -10.01563 -9.75946 -9.50413 -8.87182 -8.73159 -8.37361 -8.00623 -6.26458 -4.29918 0.83436 1.30267 1.38024 3.15903 3.18610 3.29306 3.29528 3.37026 3.67994 4.23776 4.25272 4.29784 4.45047 4.74201 4.81159 4.84988 4.87591 5.00864 5.03181 5.11883 5.20507 5.32887 5.38776 5.51680 5.54065 5.62275 5.69251 5.76577 5.79519 5.82609 5.99388 6.08147 6.21441 6.27409 6.32330 6.37184 6.48644 6.55528 6.58116 6.62983 6.66647 6.89044 7.16545 7.18988 7.42999 7.81110 8.30540 8.76136 9.34000 10.85349 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.003690 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.523468 B = 7585.401998 C = 9014.280283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C 0.244 3.756 4 H 0.049 0.951 5 C -0.545 4.545 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.294 1.294 12 H -0.259 1.259 13 N -1.098 6.098 14 S 2.613 3.387 15 O -0.982 6.982 16 O -0.967 6.967 17 C -0.616 4.616 18 C -0.067 4.067 19 C -0.094 4.094 20 C -0.076 4.076 21 C -0.132 4.132 22 C 0.098 3.902 23 C -0.174 4.174 24 C -0.065 4.065 25 C -0.109 4.109 26 C 0.051 3.949 27 O -0.308 6.308 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.267 0.733 34 H 0.408 0.592 35 H 0.149 0.851 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 12.282 -4.049 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.584 4.584 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.524 5.524 9 Si 0.703 3.297 10 H -0.201 1.201 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.856 5.856 14 S 2.706 3.294 15 O -0.972 6.972 16 O -0.958 6.958 17 C -0.746 4.746 18 C -0.106 4.106 19 C -0.095 4.095 20 C -0.094 4.094 21 C -0.151 4.151 22 C 0.053 3.947 23 C -0.175 4.175 24 C -0.083 4.083 25 C -0.146 4.146 26 C -0.024 4.024 27 O -0.222 6.222 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.242 0.758 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.526 12.802 -3.803 13.365 hybrid contribution 0.626 -0.993 0.511 1.280 sum 0.100 11.809 -3.291 12.259 Atomic orbital electron populations 1.21857 0.97322 1.00214 1.01812 1.22122 0.94027 0.99179 1.01774 1.19016 0.95559 0.90349 0.81290 0.93376 1.21453 0.89405 1.40266 1.07276 0.89871 1.24911 0.94776 0.95115 0.97714 1.69881 1.08868 1.44196 1.29496 0.87049 0.81120 0.80255 0.81236 1.20120 1.22082 1.18374 1.55232 1.86258 1.27260 1.16894 1.04591 0.76613 0.74306 0.73857 1.93534 1.84523 1.84703 1.34476 1.93561 1.54087 1.86027 1.62077 1.30648 1.23055 1.05518 1.15343 1.20255 0.96133 0.91245 1.02918 1.19466 0.96594 1.00155 0.93307 1.20830 0.96431 0.96613 0.95556 1.20223 0.94233 1.01982 0.98644 1.19549 0.87796 0.93652 0.93721 1.20684 0.98235 1.04649 0.93937 1.20170 0.91988 0.96426 0.99703 1.21774 0.92672 1.01926 0.98271 1.23810 0.93185 1.03040 0.82338 1.86800 1.26726 1.67632 1.41058 0.93148 0.92723 0.93882 0.91580 0.92367 0.92325 0.75841 0.83313 0.84784 0.89896 0.89569 0.84720 0.85388 0.85622 0.89002 0.89344 0.90450 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.85 37.16 0.37 -2.33 16 2 C -0.13 -2.63 5.03 -26.73 -0.13 -2.76 16 3 C 0.24 5.18 1.74 -69.09 -0.12 5.06 16 4 H 0.05 1.07 6.59 -51.93 -0.34 0.73 16 5 C -0.55 -13.42 8.80 -34.44 -0.30 -13.72 16 6 H 0.08 2.18 8.06 -52.48 -0.42 1.75 16 7 C 0.08 2.07 5.45 -17.82 -0.10 1.98 16 8 N -0.89 -25.04 13.96 55.43 0.77 -24.26 16 9 Si 0.87 20.19 24.41 -169.99 -4.15 16.04 16 10 H -0.27 -6.18 6.83 56.52 0.39 -5.80 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.26 -5.75 6.53 56.52 0.37 -5.38 16 13 N -1.10 -20.04 4.73 -5.89 -0.03 -20.07 16 14 S 2.61 45.26 5.42 -107.50 -0.58 44.68 16 15 O -0.98 -18.27 18.08 -57.54 -1.04 -19.31 16 16 O -0.97 -19.17 17.47 -57.54 -1.01 -20.18 16 17 C -0.62 -9.59 5.69 37.16 0.21 -9.38 16 18 C -0.07 -0.89 5.36 -27.88 -0.15 -1.04 16 19 C -0.09 -1.30 5.14 -104.56 -0.54 -1.83 16 20 C -0.08 -1.04 9.68 -39.68 -0.38 -1.42 16 21 C -0.13 -1.81 10.06 -39.31 -0.40 -2.21 16 22 C 0.10 1.38 7.04 -38.95 -0.27 1.10 16 23 C -0.17 -2.27 6.27 -104.10 -0.65 -2.92 16 24 C -0.06 -0.85 9.70 -39.72 -0.39 -1.24 16 25 C -0.11 -1.05 7.12 -26.52 -0.19 -1.24 16 26 C 0.05 0.49 8.01 38.06 0.30 0.79 16 27 O -0.31 -4.10 11.10 -20.18 -0.22 -4.32 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.91 7.64 -51.93 -0.40 0.51 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.23 3.21 -51.93 -0.17 1.07 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.41 6.66 8.81 -34.47 -0.30 6.35 16 35 H 0.15 2.52 7.84 -51.92 -0.41 2.12 16 36 H 0.13 2.02 8.14 -51.93 -0.42 1.59 16 37 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 39 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -32.50 376.52 -10.04 -42.53 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.71 Total: 10.38 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: -2.74 Total: -31.16 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.75 Total: -44.33 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -2.27 Total: -43.81 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.15 Total: 16.04 kcal Atomic # 16 Polarization: 45.26 SS G_CDS: -0.58 Total: 44.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.50 -10.04 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193492305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.780 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds