Wall clock time and date at job start Tue Mar 31 2020 22:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47042 * 2 1 4 4 H 1.09007 * 109.47480 * 304.25673 * 3 2 1 5 5 C 1.50700 * 109.47300 * 184.25956 * 3 2 1 6 6 H 1.08001 * 120.00297 * 245.50527 * 5 3 2 7 7 C 1.37883 * 119.99997 * 65.49790 * 5 3 2 8 8 N 1.31515 * 119.99997 * 9.34652 * 7 5 3 9 9 Si 1.86801 * 120.00068 * 189.34527 * 7 5 3 10 10 H 1.48495 * 109.46973 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47193 * 300.00400 * 9 7 5 12 12 H 1.48500 * 109.46958 * 60.00161 * 9 7 5 13 13 N 1.46501 * 109.47300 * 64.25675 * 3 2 1 14 14 S 1.65599 * 120.00284 * 215.44057 * 13 3 2 15 15 O 1.42094 * 104.27543 * 180.37165 * 14 13 3 16 16 O 1.42098 * 104.27503 * 308.22888 * 14 13 3 17 17 C 1.81401 * 104.44880 * 64.30038 * 14 13 3 18 18 C 1.52998 * 109.47205 * 184.51985 * 17 14 13 19 19 C 1.50698 * 109.47123 * 180.02562 * 18 17 14 20 20 C 1.38292 * 120.11533 * 269.72409 * 19 18 17 21 21 C 1.37936 * 120.34925 * 179.97438 * 20 19 18 22 22 C 1.39279 * 120.23851 * 0.54603 * 21 20 19 23 23 C 1.38883 * 118.87871 * 359.41776 * 22 21 20 24 24 C 1.37741 * 120.78700 * 0.41293 * 23 22 21 25 25 C 1.51649 * 107.03946 * 180.68291 * 23 22 21 26 26 C 1.54703 * 101.91957 * 15.47007 * 25 23 22 27 27 O 1.36134 * 129.88452 * 179.10042 * 22 21 20 28 28 H 1.08996 * 109.47524 * 64.54474 * 1 2 3 29 29 H 1.09000 * 109.46897 * 184.54008 * 1 2 3 30 30 H 1.09002 * 109.47126 * 304.53969 * 1 2 3 31 31 H 1.09003 * 109.46530 * 240.00303 * 2 1 3 32 32 H 1.08996 * 109.47105 * 120.00626 * 2 1 3 33 33 H 0.97003 * 119.99567 * 357.05052 * 8 7 5 34 34 H 0.97001 * 119.99489 * 35.44240 * 13 3 2 35 35 H 1.09004 * 109.47000 * 304.52109 * 17 14 13 36 36 H 1.08994 * 109.47239 * 64.51813 * 17 14 13 37 37 H 1.09000 * 109.46804 * 300.00221 * 18 17 14 38 38 H 1.09007 * 109.47169 * 60.00045 * 18 17 14 39 39 H 1.07997 * 119.82560 * 0.16883 * 20 19 18 40 40 H 1.07999 * 119.87410 * 180.27867 * 21 20 19 41 41 H 1.08001 * 120.01369 * 179.76931 * 24 23 22 42 42 H 1.09001 * 110.93929 * 133.62921 * 25 23 22 43 43 H 1.08997 * 110.93544 * 257.27365 * 25 23 22 44 44 H 1.08999 * 110.75174 * 93.02557 * 26 25 23 45 45 H 1.09005 * 110.74833 * 216.18930 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6157 1.9779 -0.8494 5 6 3.5433 1.4438 -0.1055 6 1 4.1419 1.8109 0.7150 7 6 4.1545 0.9763 -1.2496 8 7 3.4339 0.7023 -2.3151 9 14 6.0061 0.7321 -1.2863 10 1 6.4122 0.2255 -2.6218 11 1 6.6816 2.0280 -1.0226 12 1 6.3965 -0.2508 -0.2438 13 7 1.6372 2.1029 1.2441 14 16 1.2299 3.7080 1.2353 15 8 0.9106 3.9959 2.5896 16 8 2.3246 4.3436 0.5896 17 6 -0.2566 3.7921 0.1990 18 6 -0.6711 5.2539 0.0196 19 6 -1.9063 5.3238 -0.8408 20 6 -1.7899 5.4359 -2.2142 21 6 -2.9173 5.4997 -3.0064 22 6 -4.1839 5.4631 -2.4281 23 6 -4.2880 5.3494 -1.0478 24 6 -3.1608 5.2823 -0.2589 25 6 -5.7671 5.3177 -0.7149 26 6 -6.3993 5.0242 -2.0960 27 8 -5.4121 5.5284 -3.0115 28 1 -0.3634 0.4417 -0.9278 29 1 -0.3633 -1.0245 0.0813 30 1 -0.3633 0.5827 0.8465 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.4682 0.7882 -2.2827 34 1 1.6090 1.5998 2.0730 35 1 -0.0454 3.3520 -0.7756 36 1 -1.0656 3.2414 0.6788 37 1 -0.8822 5.6940 0.9942 38 1 0.1380 5.8047 -0.4603 39 1 -0.8111 5.4706 -2.6693 40 1 -2.8175 5.5827 -4.0785 41 1 -3.2563 5.1977 0.8135 42 1 -5.9900 4.5195 -0.0068 43 1 -6.1004 6.2814 -0.3300 44 1 -6.5434 3.9527 -2.2350 45 1 -7.3434 5.5571 -2.2097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193492318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:33 Heat of formation + Delta-G solvation = -95.163371 kcal Electronic energy + Delta-G solvation = -27489.548683 eV Core-core repulsion = 23598.972424 eV Total energy + Delta-G solvation = -3890.576259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.29834 -38.17771 -36.64951 -36.22025 -35.33947 -33.85590 -32.90448 -32.24239 -30.84070 -29.59262 -29.12851 -26.20740 -24.57148 -23.47902 -23.15757 -22.14899 -20.96102 -20.46788 -18.76475 -17.61010 -17.27738 -17.19019 -16.95651 -16.43300 -15.93433 -15.55707 -15.18167 -14.64026 -14.31429 -13.93431 -13.75570 -13.52384 -13.45253 -13.39311 -13.23164 -13.14441 -13.05234 -12.41931 -12.40763 -12.11613 -11.98912 -11.63671 -11.58787 -11.48265 -11.43112 -11.26032 -11.00031 -10.91021 -10.75183 -10.64742 -10.44081 -10.10547 -10.09304 -10.07499 -9.54193 -9.07590 -8.41788 -8.22815 -8.01915 -6.39546 -4.11416 0.76956 1.10058 1.17676 3.00398 3.37050 3.45799 3.48400 3.50989 3.66206 4.10294 4.23889 4.28554 4.52787 4.56020 4.61827 4.68117 4.70250 4.88386 4.92906 5.03512 5.17875 5.20831 5.26817 5.34018 5.37194 5.44809 5.50281 5.59991 5.82435 5.84241 5.88567 5.89665 6.01626 6.08156 6.17425 6.23839 6.39829 6.44332 6.49568 6.58119 6.75514 6.97263 7.15629 7.29651 7.85729 8.01798 8.48244 8.79325 9.55716 10.96111 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.002960 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.533008 B = 9456.369279 C = 9955.463916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.269 3.731 4 H 0.030 0.970 5 C -0.599 4.599 6 H 0.059 0.941 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.288 1.288 13 N -1.100 6.100 14 S 2.609 3.391 15 O -0.983 6.983 16 O -0.939 6.939 17 C -0.634 4.634 18 C -0.065 4.065 19 C -0.097 4.097 20 C -0.078 4.078 21 C -0.133 4.133 22 C 0.098 3.902 23 C -0.175 4.175 24 C -0.066 4.066 25 C -0.110 4.110 26 C 0.051 3.949 27 O -0.307 6.307 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.268 0.732 34 H 0.405 0.595 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.460 6.911 2.268 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C 0.164 3.836 4 H 0.047 0.953 5 C -0.639 4.639 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.545 5.545 9 Si 0.894 3.106 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.859 5.859 14 S 2.700 3.300 15 O -0.973 6.973 16 O -0.929 6.929 17 C -0.761 4.761 18 C -0.104 4.104 19 C -0.098 4.098 20 C -0.096 4.096 21 C -0.151 4.151 22 C 0.053 3.947 23 C -0.176 4.176 24 C -0.085 4.085 25 C -0.147 4.147 26 C -0.024 4.024 27 O -0.221 6.221 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.238 0.762 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.811 7.329 1.319 18.386 hybrid contribution -1.988 -0.297 1.038 2.262 sum -18.798 7.032 2.357 20.209 Atomic orbital electron populations 1.21886 0.98378 1.00219 1.00605 1.21957 0.92661 0.99797 1.02543 1.18601 0.95766 0.89347 0.79875 0.95264 1.22258 0.90762 1.45784 1.05056 0.92290 1.25758 1.06997 0.93610 0.91659 1.70864 1.08023 1.46854 1.28759 0.83578 0.74389 0.76699 0.75923 1.20817 1.21260 1.21421 1.55417 1.82820 1.29922 1.17719 1.04918 0.76369 0.74164 0.74596 1.93527 1.86267 1.84232 1.33318 1.93639 1.47025 1.74712 1.77485 1.30795 1.23028 1.03947 1.18347 1.20207 0.96534 0.93109 1.00512 1.19520 0.93828 1.02525 0.93922 1.20900 0.98355 0.97508 0.92799 1.20265 0.88489 1.05818 1.00557 1.19564 0.86553 0.97518 0.91036 1.20706 0.95328 1.07907 0.93671 1.20194 0.90177 0.98477 0.99617 1.21784 0.91024 1.03673 0.98195 1.23814 0.91794 1.00059 0.86688 1.86817 1.13912 1.79576 1.41788 0.93573 0.93950 0.93644 0.90428 0.92760 0.92100 0.76160 0.84723 0.85432 0.89764 0.89037 0.84522 0.85227 0.85588 0.89048 0.89198 0.90544 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.85 37.16 0.37 -2.13 16 2 C -0.13 -2.63 5.24 -26.73 -0.14 -2.77 16 3 C 0.27 6.03 1.69 -69.09 -0.12 5.91 16 4 H 0.03 0.68 6.37 -51.92 -0.33 0.35 16 5 C -0.60 -16.06 8.76 -34.44 -0.30 -16.36 16 6 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 7 C 0.02 0.67 5.17 -17.82 -0.09 0.57 16 8 N -0.91 -25.65 13.04 55.43 0.72 -24.93 16 9 Si 1.07 24.85 29.91 -169.99 -5.09 19.76 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 13 N -1.10 -21.01 4.68 -5.88 -0.03 -21.03 16 14 S 2.61 46.97 5.38 -107.50 -0.58 46.40 16 15 O -0.98 -18.85 18.08 -57.54 -1.04 -19.89 16 16 O -0.94 -21.12 17.83 -57.54 -1.03 -22.15 16 17 C -0.63 -8.77 5.96 37.16 0.22 -8.55 16 18 C -0.07 -0.81 5.36 -27.89 -0.15 -0.96 16 19 C -0.10 -1.18 5.14 -104.56 -0.54 -1.71 16 20 C -0.08 -0.93 9.68 -39.67 -0.38 -1.32 16 21 C -0.13 -1.58 10.06 -39.31 -0.40 -1.98 16 22 C 0.10 1.19 7.04 -38.96 -0.27 0.92 16 23 C -0.18 -1.93 6.27 -104.10 -0.65 -2.59 16 24 C -0.07 -0.75 9.70 -39.72 -0.39 -1.13 16 25 C -0.11 -0.85 7.12 -26.52 -0.19 -1.03 16 26 C 0.05 0.39 8.01 38.05 0.30 0.69 16 27 O -0.31 -3.52 11.10 -20.17 -0.22 -3.75 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.66 7.61 -51.93 -0.39 0.26 16 31 H 0.08 1.76 6.39 -51.93 -0.33 1.43 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.27 7.33 6.06 -40.82 -0.25 7.08 16 34 H 0.41 6.97 8.80 -34.47 -0.30 6.66 16 35 H 0.13 1.91 7.29 -51.92 -0.38 1.53 16 36 H 0.13 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.09 1.11 8.09 -51.92 -0.42 0.69 16 39 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -34.48 382.21 -10.91 -45.38 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.68 Total: 6.88 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: -2.73 Total: -32.43 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.70 Total: -45.97 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -2.29 Total: -45.79 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.09 Total: 19.76 kcal Atomic # 16 Polarization: 46.97 SS G_CDS: -0.58 Total: 46.40 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.48 -10.91 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193492318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.780 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds